Cla97C05G089070 (gene) Watermelon (97103) v2

Overview
NameCla97C05G089070
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 7307274 .. 7307613 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGTAAGTCTTTCTTTTTCCATGATATCTTTCTAACAATATTGTTTTATAAATTTACTACAACCTATAACGTCGGAAGTATCAATTTAAACTTTTGAGTTGATAGGCGAGTCGTTGTTGGTGACGAAGACGAATGGTGTGATGGGCAGGAGATTAATTGTTCGACAGCTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAA

mRNA sequence

ATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGCGAGTCGTTGTTGGTGACGAAGACGAATGGTGTGATGGGCAGGAGATTAATTGTTCGACAGCTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAA

Coding sequence (CDS)

ATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGCGAGTCGTTGTTGGTGACGAAGACGAATGGTGTGATGGGCAGGAGATTAATTGTTCGACAGCTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAA

Protein sequence

MASTTLVAWEKVIFFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLDIPRKGNYSPPPPRRHPPPYSY
Homology
[Close]
BLAST of Cla97C05G089070 vs. NCBI nr
Match: KGN57260.1 (hypothetical protein Csa_3G175610 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 0 

Query: 1  MASTTL--VAWEKV-IFFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLD 60
          MA+ T+  VAW+KV IFF LLLLA+N+SARE VA T  E  L T+ N V+ RRL VRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 IPRKGNYSP 67
             +GNY P
Sbjct: 61 TSWRGNYFP 69

[Close]
BLAST of Cla97C05G089070 vs. TrEMBL
Match: tr|A0A0A0L5K7|A0A0A0L5K7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 0 

Query: 1  MASTTL--VAWEKV-IFFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLD 60
          MA+ T+  VAW+KV IFF LLLLA+N+SARE VA T  E  L T+ N V+ RRL VRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 IPRKGNYSP 67
             +GNY P
Sbjct: 61 TSWRGNYFP 69

The following BLAST results are available for this feature:
BLAST of Cla97C05G089070 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57260.11.9e-0859.42hypothetical protein Csa_3G175610 [Cucumis sativus][more]
BLAST of Cla97C05G089070 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5K7|A0A0A0L5K7_CUCSA1.2e-0859.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1[more]
BLAST of Cla97C05G089070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G089070 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G089070.1Cla97C05G089070.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..78

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G089070Cla006276Watermelon (97103) v1wmwmbB206
Cla97C05G089070Csa3G175610Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G089070ClCG05G007320Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G089070CSPI03G15870Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G089070Lsi05G013300Bottle gourd (USVL1VR-Ls)lsiwmbB334
Cla97C05G089070MELO3C031780.2Melon (DHL92) v3.6.1medwmbB423
Cla97C05G089070CsaV3_3G016080Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G089070Bhi01G000888Wax gourdwgowmbB178
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G089070Silver-seed gourdcarwmbB0398
Cla97C05G089070Silver-seed gourdcarwmbB0910
Cla97C05G089070Cucumber (Gy14) v2cgybwmbB196
Cla97C05G089070Cucumber (Gy14) v1cgywmbB452
Cla97C05G089070Cucurbita maxima (Rimu)cmawmbB346
Cla97C05G089070Cucurbita maxima (Rimu)cmawmbB767
Cla97C05G089070Cucurbita moschata (Rifu)cmowmbB331
Cla97C05G089070Cucurbita moschata (Rifu)cmowmbB739
Cla97C05G089070Melon (DHL92) v3.5.1mewmbB434