CmoCh16G002100 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 926384 .. 926725 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCACCTACAGCTTTGGTTGCTTGGAAGAAGGTTGCCTTCTTGGCTTTCCTTCTTATTGCTGTCAGTGTTTCTGCAAGAGAACTTGCTGGGGCTAACGTTGTCACACGCACAGCCCGTAAGTCCGTTTAAGCTTTTGAGTTGATAAGTGATTTAACTGTTCTTTTCATGAGGCTTTTATCACTTTTTGTGTTCGAGTCAACAGGTGAGATGGCGGCGGAGCCCAATGGTGTGATAGGAGGCAGCAGATTAATAGCTCGACAATTGGATACCGCTTGGAGAGGACATTATTCTCCTCCTCCTCCTCGTTCTCCTCCTCCTCCTCCCCATTCCTCCTAA

mRNA sequence

ATGGCTTCACCTACAGCTTTGGTTGCTTGGAAGAAGGTTGCCTTCTTGGCTTTCCTTCTTATTGCTGTCAGTGTTTCTGCAAGAGAACTTGCTGGGGCTAACGTTGTCACACGCACAGCCCGTGAGATGGCGGCGGAGCCCAATGGTGTGATAGGAGGCAGCAGATTAATAGCTCGACAATTGGATACCGCTTGGAGAGGACATTATTCTCCTCCTCCTCCTCGTTCTCCTCCTCCTCCTCCCCATTCCTCCTAA

Coding sequence (CDS)

ATGGCTTCACCTACAGCTTTGGTTGCTTGGAAGAAGGTTGCCTTCTTGGCTTTCCTTCTTATTGCTGTCAGTGTTTCTGCAAGAGAACTTGCTGGGGCTAACGTTGTCACACGCACAGCCCGTGAGATGGCGGCGGAGCCCAATGGTGTGATAGGAGGCAGCAGATTAATAGCTCGACAATTGGATACCGCTTGGAGAGGACATTATTCTCCTCCTCCTCCTCGTTCTCCTCCTCCTCCTCCCCATTCCTCCTAA
Homology
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BLAST of CmoCh16G002100 vs. TrEMBL
Match: A0A0A0LB11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.5e-06
Identity = 38/81 (46.91%), Postives = 47/81 (58.02%), Query Frame = 1 

Query: 1  MASPTALVAWKKVAFLAFLLIAVSVSARELAGANVVTRTAREMAAEPNGVIGGSRLIARQ 60
          MA+P  LV      F + LL+A + S        V+ R AREM A       G +L ARQ
Sbjct: 1  MATPRFLV------FFSLLLLAFNFST------GVLARPAREMVAVETNWEMGRKLTARQ 60

Query: 61 LDTAWRGHYSPPPPRSPPPPP 82
          LDT+W+G+YSPPPP  PPPPP
Sbjct: 61 LDTSWKGNYSPPPPNRPPPPP 69

The following BLAST results are available for this feature:
BLAST of CmoCh16G002100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB11_CUCSA7.5e-0646.91Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175620 PE=4 SV=1[more]
BLAST of CmoCh16G002100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002100 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002100.1CmoCh16G002100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G002100Cp4.1LG14g05550Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002100Cp4.1LG01g03830Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G002100CsaV3_3G016080Cucumber (Chinese Long) v3cmocucB0379
CmoCh16G002100Bhi01G000888Wax gourdcmowgoB0436
CmoCh16G002100Carg08017Silver-seed gourdcarcmoB0509
CmoCh16G002100Carg16743Silver-seed gourdcarcmoB1175
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G002100CmoCh04G003590Cucurbita moschata (Rifu)cmocmoB286
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002100Cucumber (Gy14) v2cgybcmoB312
CmoCh16G002100Melon (DHL92) v3.6.1cmomedB331
CmoCh16G002100Watermelon (97103) v2cmowmbB331
CmoCh16G002100Cucumber (Gy14) v1cgycmoB0704
CmoCh16G002100Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002100Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002100Wild cucumber (PI 183967)cmocpiB325
CmoCh16G002100Cucumber (Chinese Long) v2cmocuB317
CmoCh16G002100Melon (DHL92) v3.5.1cmomeB289
CmoCh16G002100Watermelon (Charleston Gray)cmowcgB290
CmoCh16G002100Watermelon (97103) v1cmowmB310
CmoCh16G002100Bottle gourd (USVL1VR-Ls)cmolsiB300