CsGy3G015970 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G015970
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 11850020 .. 11851084 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTCTCCACAACCAAAAATTAATGGCTACACCAAGATTTTTGGTCTTCTTCTCTTTGCTCCTTCTTCTTGCTTTCAACTTTTCGACCGGGGTTTTAGCTCGACCAGCCCGTAAGTCTTTGTTTTCTCTAATGTCTTTCTAGAAATTAAATGTAGAGACAATCTGTGGAATACAAATGACGATACTTATATTACGTCTATTGGTATGATCAAGCATGTTGGGTGATTTAACCATTATAGAAATATATGTCGAGGGCTACGTTTCGCTGTCCATGCTTATCGATTTTCACAAACTCTATGTTTGACTTGTTCTTTTCTCCTCTAGGTGAAAAGGTGGCGGTGGAGACTAATTGGGAAATGGGTCGGAAACTAACAGCTCGACAGTTGGATACCTCTTGGAAAGGAAATTATTCTCCTCCTCCTCCTAATCGTCCTCCTCCGCCCCCTCCTTATCGTCAGCTTCCTCGCCCTCGTCCTTGTTATCGTCGTCCTTGTATCCCTCCCTAATCATCAGCAAGGCAAAATCGCCAACGTGAATGGCAAATTGTTGTATGAACTTCGAATTTTCTTTGAGGTTTGTGACGTTTAATGGTGTTGTGTGACTTTGGGTGGAGCCTGGGGCACAGGTGCATCTGGAGTTTAATAATGTCAAATAATTCAATTGTGTGTGTGATCAAAGTTTTCAAGAGTATTGATGTAATAAAGAATGTTCTTTATGTAAATGGGACTGAAGACTATGTGTTATGACTTCTTTGATTCAAGTTTAATACAGATGAGTAATAATAATGAGTGTGTGTGGGAAATATGTTCATATCAAACAAAGAATCACACACCAAGTCGTCAACATGGAGTATATACTTAGCTGGTGAAGATCGAAAATCTCAGACCTAAATATCATTGAGTGTACAAGTTCTTGGGCGTTGGATCCCCACCCCACATTATTGTAAAATGTAAAAGAAAATAAAAACCACACCGATTCTTCGTTAAAGTGGTTATCAATTATGACTTTAAGTTACGTACCATTTGTTCATATCTTAAGTTAACTCCTCTATTTACTAAGAGCTA

mRNA sequence

CTTCTCTCCACAACCAAAAATTAATGGCTACACCAAGATTTTTGGTCTTCTTCTCTTTGCTCCTTCTTCTTGCTTTCAACTTTTCGACCGGGGTTTTAGCTCGACCAGCCCGTGAAAAGGTGGCGGTGGAGACTAATTGGGAAATGGGTCGGAAACTAACAGCTCGACAGTTGGATACCTCTTGGAAAGGAAATTATTCTCCTCCTCCTCCTAATCGTCCTCCTCCGCCCCCTCCTTATCGTCAGCTTCCTCGCCCTCGTCCTTGTTATCGTCGTCCTTGTATCCCTCCCTAATCATCAGCAAGGCAAAATCGCCAACGTGAATGGCAAATTGTTGTATGAACTTCGAATTTTCTTTGAGGTTTGTGACGTTTAATGGTGTTGTGTGACTTTGGGTGGAGCCTGGGGCACAGGTGCATCTGGAGTTTAATAATGTCAAATAATTCAATTGTGTGTGTGATCAAAGTTTTCAAGAGTATTGATGTAATAAAGAATGTTCTTTATGTAAATGGGACTGAAGACTATGTGTTATGACTTCTTTGATTCAAGTTTAATACAGATGAGTAATAATAATGAGTGTGTGTGGGAAATATGTTCATATCAAACAAAGAATCACACACCAAGTCGTCAACATGGAGTATATACTTAGCTGGTGAAGATCGAAAATCTCAGACCTAAATATCATTGAGTGTACAAGTTCTTGGGCGTTGGATCCCCACCCCACATTATTGTAAAATGTAAAAGAAAATAAAAACCACACCGATTCTTCGTTAAAGTGGTTATCAATTATGACTTTAAGTTACGTACCATTTGTTCATATCTTAAGTTAACTCCTCTATTTACTAAGAGCTA

Coding sequence (CDS)

ATGGCTACACCAAGATTTTTGGTCTTCTTCTCTTTGCTCCTTCTTCTTGCTTTCAACTTTTCGACCGGGGTTTTAGCTCGACCAGCCCGTGAAAAGGTGGCGGTGGAGACTAATTGGGAAATGGGTCGGAAACTAACAGCTCGACAGTTGGATACCTCTTGGAAAGGAAATTATTCTCCTCCTCCTCCTAATCGTCCTCCTCCGCCCCCTCCTTATCGTCAGCTTCCTCGCCCTCGTCCTTGTTATCGTCGTCCTTGTATCCCTCCCTAA

Protein sequence

MATPRFLVFFSLLLLLAFNFSTGVLARPAREKVAVETNWEMGRKLTARQLDTSWKGNYSPPPPNRPPPPPPYRQLPRPRPCYRRPCIPP

Homology

[Close]

BLAST of CsGy3G015970 vs. NCBI nr
Match: KGN57261.1 (hypothetical protein Csa_3G175620 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 6.9e-31
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATPRFLVFFSLLLLLAFNFSTGVLARPAREKVAVETNWEMGRKLTARQLDTSWKGNYSX 60
          MATPRFLVFFS LLLLAFNFSTGVLARPARE VAVETNWEMGRKLTARQLDTSWKGNYSX
Sbjct: 1  MATPRFLVFFS-LLLLAFNFSTGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYSX 60

Query: 61 XXXXXXXXXXXXRQLPRPRPCYRRPCIPP 90
          XXXXXXXXXXXXRQLPRPRPCYRRPCIPP
Sbjct: 61 XXXXXXXXXXXXRQLPRPRPCYRRPCIPP 88

[Close]

BLAST of CsGy3G015970 vs. TrEMBL
Match: tr|A0A0A0LB11|A0A0A0LB11_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.5e-31
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATPRFLVFFSLLLLLAFNFSTGVLARPAREKVAVETNWEMGRKLTARQLDTSWKGNYSX 60
          MATPRFLVFFS LLLLAFNFSTGVLARPARE VAVETNWEMGRKLTARQLDTSWKGNYSX
Sbjct: 1  MATPRFLVFFS-LLLLAFNFSTGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYSX 60

Query: 61 XXXXXXXXXXXXRQLPRPRPCYRRPCIPP 90
          XXXXXXXXXXXXRQLPRPRPCYRRPCIPP
Sbjct: 61 XXXXXXXXXXXXRQLPRPRPCYRRPCIPP 88

The following BLAST results are available for this feature:

BLAST of CsGy3G015970 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57261.1	6.9e-31	97.75	hypothetical protein Csa_3G175620 [Cucumis sativus]	[more]

BLAST of CsGy3G015970 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G015970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G015970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LB11\|A0A0A0LB11_CUCSA	4.5e-31	97.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G015970.1	CsGy3G015970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G015970	Csa3G175620	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G015970	CSPI03G15880	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G015970	CsaV3_3G016090	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G015970	Carg08017	Silver-seed gourd	carcgybB0381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G015970	Watermelon (97103) v2	cgybwmbB196
CsGy3G015970	Wax gourd	cgybwgoB257
CsGy3G015970	Cucurbita maxima (Rimu)	cgybcmaB342
CsGy3G015970	Cucurbita maxima (Rimu)	cgybcmaB417
CsGy3G015970	Cucurbita moschata (Rifu)	cgybcmoB312
CsGy3G015970	Cucurbita moschata (Rifu)	cgybcmoB394
CsGy3G015970	Cucurbita pepo (Zucchini)	cgybcpeB327
CsGy3G015970	Cucurbita pepo (Zucchini)	cgybcpeB370
CsGy3G015970	Bottle gourd (USVL1VR-Ls)	cgyblsiB197
CsGy3G015970	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G015970	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G015970	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G015970	Watermelon (97103) v1	cgybwmB217
CsGy3G015970	Silver-seed gourd	carcgybB0859