CsaV3_3G016090 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G016090
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 12008850 .. 12009951 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTTTCTAAGTATTTATCTTGAAAACGAAGCCCCTCCTCACCTGTCTATTTTGTTTTGTTACTTAATATATATGCACATATTTTAGCACTTCTCTCCACAACCAAAAATTAATGGCTACACCAAGATTTTTGGTCTTCTTCTCTTTGCTCCTTCTTGCTTTCAACTTTTCGACCGGGGTTTTAGCTCGACCAGCCCGTAAGTCTTTGTTTTCTCTAATGTCTTTCTAGAAATTAAATGTAGAGACAATCTGTGGAATACAAATGACGATAATTATATTACGTCTATTGGTATGATCAAGCATGTTGGGTGATTTAACCATTATAGAAATATATGTCGAGGGCTACGTTTCGCTGTCCATGCTTATCGATTTTCACAAACTCTATGTTTGACTTGTTCTTTTCTCCTCTAGGTGAAATGGTGGCGGTGGAGACTAATTGGGAAATGGGTCGGAAACTAACAGCTCGACAGTTGGATACCTCTTGGAAAGGAAATTATTCTCCTCCTCCTCCTAATCGTCCTCCTCCGCCCCCTCCTTATCGTCAGCTTCCTCGCCCTCGTCCTTGTTATCGTCGTCCTTGTATCCCTCCCTAATCATCAGCAAGGCAAAATCGCCAACGTGAATGGCAAATTGTTGTATGAACTTCGAATTTTCTTTGAGGTTTGTGACGTTTAATGGTGTTGTGTGACTTTGGGTGGAGCCTGGGGCACAGGTGCATTTGGAGTTTAATAATGTCAAATAATTCAATTGTGTGTGTGATCAAAGTTTTCAAGAGTATTGATGTAATAAAGAATGTTCTTTATGTAAATGGGACTGAAGACTATGTGTTATGACTTCTTTGATTCAAGTTTAATACAGATGAGTAATAATAATGAGTGTGTGTGGGAAATATGTTCATATCAAACAAAGAATCACACACCAAGTCGTCAACATGGAGTATATACTTAGCTGGTGAAGATCGAAAATCTCAGACCTAAATATCATTGAGTGTACAAGTTCTTGGGCGTTGGATCCCCACCCCACATTATTGTAAAATGTAAAAGAAAATAAAAACCACACCGATTCTTCCTTAAAGTGGTTATCAATTATGAAATAAAAACC

mRNA sequence

ATGGCTACACCAAGATTTTTGGTCTTCTTCTCTTTGCTCCTTCTTGCTTTCAACTTTTCGACCGGGGTTTTAGCTCGACCAGCCCGTGAAATGGTGGCGGTGGAGACTAATTGGGAAATGGGTCGGAAACTAACAGCTCGACAGTTGGATACCTCTTGGAAAGGAAATTATTCTCCTCCTCCTCCTAATCGTCCTCCTCCGCCCCCTCCTTATCGTCAGCTTCCTCGCCCTCGTCCTTGTTATCGTCGTCCTTGTATCCCTCCCTAA

Coding sequence (CDS)

ATGGCTACACCAAGATTTTTGGTCTTCTTCTCTTTGCTCCTTCTTGCTTTCAACTTTTCGACCGGGGTTTTAGCTCGACCAGCCCGTGAAATGGTGGCGGTGGAGACTAATTGGGAAATGGGTCGGAAACTAACAGCTCGACAGTTGGATACCTCTTGGAAAGGAAATTATTCTCCTCCTCCTCCTAATCGTCCTCCTCCGCCCCCTCCTTATCGTCAGCTTCCTCGCCCTCGTCCTTGTTATCGTCGTCCTTGTATCCCTCCCTAA

Protein sequence

MATPRFLVFFSLLLLAFNFSTGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYSPPPPNRPPPPPPYRQLPRPRPCYRRPCIPP
Homology
[Close]
BLAST of CsaV3_3G016090 vs. NCBI nr
Match: KGN57261.1 (hypothetical protein Csa_3G175620 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-33
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MATPRFLVFFSLLLLAFNFSTGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYSXX 60
          MATPRFLVFFSLLLLAFNFSTGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYSXX
Sbjct: 1  MATPRFLVFFSLLLLAFNFSTGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYSXX 60

Query: 61 XXXXXXXXXXXRQLPRPRPCYRRPCIPP 89
          XXXXXXXXXXXRQLPRPRPCYRRPCIPP
Sbjct: 61 XXXXXXXXXXXRQLPRPRPCYRRPCIPP 88

[Close]
BLAST of CsaV3_3G016090 vs. TrEMBL
Match: tr|A0A0A0LB11|A0A0A0LB11_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-33
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MATPRFLVFFSLLLLAFNFSTGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYSXX 60
          MATPRFLVFFSLLLLAFNFSTGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYSXX
Sbjct: 1  MATPRFLVFFSLLLLAFNFSTGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYSXX 60

Query: 61 XXXXXXXXXXXRQLPRPRPCYRRPCIPP 89
          XXXXXXXXXXXRQLPRPRPCYRRPCIPP
Sbjct: 61 XXXXXXXXXXXRQLPRPRPCYRRPCIPP 88

The following BLAST results are available for this feature:
BLAST of CsaV3_3G016090 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57261.12.5e-33100.00hypothetical protein Csa_3G175620 [Cucumis sativus][more]
BLAST of CsaV3_3G016090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G016090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G016090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LB11|A0A0A0LB11_CUCSA1.7e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G016090.1CsaV3_3G016090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..78

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G016090CSPI03G15880Wild cucumber (PI 183967)cpicucB144
CsaV3_3G016090CsGy3G015970Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G016090Bottle gourd (USVL1VR-Ls)cuclsiB229
CsaV3_3G016090Bottle gourd (USVL1VR-Ls)cuclsiB245
CsaV3_3G016090Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G016090Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G016090Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G016090Watermelon (97103) v1cucwmB239
CsaV3_3G016090Watermelon (97103) v2cucwmbB206
CsaV3_3G016090Wax gourdcucwgoB272
CsaV3_3G016090Silver-seed gourdcarcucB0404
CsaV3_3G016090Silver-seed gourdcarcucB0909
CsaV3_3G016090Cucumber (Gy14) v1cgycucB387
CsaV3_3G016090Cucurbita maxima (Rimu)cmacucB0383
CsaV3_3G016090Cucurbita maxima (Rimu)cmacucB0838
CsaV3_3G016090Cucurbita moschata (Rifu)cmocucB0379
CsaV3_3G016090Cucurbita moschata (Rifu)cmocucB0823
CsaV3_3G016090Cucurbita pepo (Zucchini)cpecucB0257
CsaV3_3G016090Cucurbita pepo (Zucchini)cpecucB0492