Carg01927 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01927
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cyclin-dependent protein kinase inhibitor SMR1-like
Location	Cucurbita_argyrosperma_scaffold_003 : 1205438 .. 1205830 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAATTGATAACATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCTGCTAAAATAAGCTTCTGCGAGTGTAAATGA

mRNA sequence

ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAATTGATAACATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCTGCTAAAATAAGCTTCTGCGAGTGTAAATGA

Coding sequence (CDS)

ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAATTGATAACATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCTGCTAAAATAAGCTTCTGCGAGTGTAAATGA

Protein sequence

MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKKSAKISFCECK

Homology

[Close]

BLAST of Carg01927 vs. NCBI nr
Match: XP_022957068.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata])

HSP 1 Score: 262.3 bits (669), Expect = 8.7e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60
           MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120
           TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKISFCECK 131
           SAKISFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Carg01927 vs. NCBI nr
Match: XP_022992922.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima])

HSP 1 Score: 260.0 bits (663), Expect = 4.3e-66
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60
           MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGG EELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGDEELCCRTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120
           TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKISFCECK 131
           SAKISFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Carg01927 vs. NCBI nr
Match: XP_023531359.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 2.8e-65
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60
           MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKER D IDGGAEELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120
           TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKISFCECK 131
           SAKISFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Carg01927 vs. NCBI nr
Match: XP_008446800.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 6.7e-51
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSS--MAADHGGVIIQKERID-NIDGGAEELCC 60
           MST+LDLRRTLLE+VRRP IKLQIP P ++  M  D GGVIIQK+RID   DGGAEELCC
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPLPSTAVVMGGDRGGVIIQKDRIDKGEDGGAEELCC 60

Query: 61  RTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENR 120
           RTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV R+EIEPY  +SFDHE+R
Sbjct: 61  RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNASFDHEDR 120

Query: 121 VKKSAKISFCECK 131
           V+KSAK SFCECK
Sbjct: 121 VRKSAKRSFCECK 133

[Close]

BLAST of Carg01927 vs. NCBI nr
Match: XP_022139169.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Momordica charantia])

HSP 1 Score: 187.2 bits (474), Expect = 3.6e-44
Identity = 101/129 (78.29%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQI--PRPLSSMAADHGGVIIQKERIDNIDGGAEELCCR 60
           MSTDLDLRRTLL +VRRPA KLQI  PRP +SM AD GGV+ QKER  + D GAE+ CCR
Sbjct: 1   MSTDLDLRRTLLGIVRRPASKLQISNPRPSTSM-ADGGGVVDQKER-SSSDDGAEDQCCR 60

Query: 61  TPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRV 120
           TPTS ENKIP +LQCPPAPRKRKRPPTCRRRL+ELEFVEIVSREEIEPY  SSF+HE+RV
Sbjct: 61  TPTSVENKIPALLQCPPAPRKRKRPPTCRRRLMELEFVEIVSREEIEPYLASSFEHEDRV 120

Query: 121 KKSAKISFC 128
            KSAK SFC
Sbjct: 121 -KSAKRSFC 126

[Close]

BLAST of Carg01927 vs. TAIR10
Match: AT5G40460.1 (unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.6e-06
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 53 EELCCRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLI 92
          EE C  TPT+ E KIP +L+CPPAPRKR+    CR  ++
Sbjct: 56 EEECSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVV 94

[Close]

BLAST of Carg01927 vs. TAIR10
Match: AT5G02420.1 (unknown protein)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 53  EELCCRTPTSAENKIPVV--LQCPPAPRKRK--RPPTCRRRLIELEFVE---IVSREEIE 112
           EE  C+TPTS+++KIP V    CPPAPRK K  R    +R+L  +  V    I    EIE
Sbjct: 40  EEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRSSGTKRKLTPVNVVNRIPIDLSREIE 99

Query: 113 PYFTSSFDHENRVKKSAK 124
            +F    D + R+KKS K
Sbjct: 100 MFFE---DLDRRIKKSRK 114

[Close]

BLAST of Carg01927 vs. TAIR10
Match: AT2G37610.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.6e-04
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 58  RTPTSAENKIPVVLQCPPAPRKRK------RPPTCRRRL 91
           +TPT  EN+IP+V +CPPAP KR       R   CRRRL
Sbjct: 97  KTPTRPENRIPIVRECPPAPMKRSSEMFRGRTMYCRRRL 135

[Close]

BLAST of Carg01927 vs. TAIR10
Match: AT1G60783.1 (unknown protein)

HSP 1 Score: 41.6 bits (96), Expect = 4.4e-04
Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 0


Query: 53 EELCCRTPTSAENKIPVVLQCPPAPRKRK 82
          E+LC  TPT+   +IP V+ CPPAP+KRK
Sbjct: 51 EDLCPTTPTADSVRIPTVIPCPPAPKKRK 79

[Close]

BLAST of Carg01927 vs. Swiss-Prot
Match: sp|Q29Q81|SMR6_ARATH (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.4e-05
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 53 EELCCRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLI 92
          EE C  TPT+ E KIP +L+CPPAPRKR+    CR  ++
Sbjct: 56 EEECSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVV 94

[Close]

BLAST of Carg01927 vs. Swiss-Prot
Match: sp|Q9LZ60|SMR3_ARATH (Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 GN=SMR3 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.2e-04
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 53  EELCCRTPTSAENKIPVV--LQCPPAPRKRK--RPPTCRRRLIELEFVE---IVSREEIE 112
           EE  C+TPTS+++KIP V    CPPAPRK K  R    +R+L  +  V    I    EIE
Sbjct: 40  EEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRSSGTKRKLTPVNVVNRIPIDLSREIE 99

Query: 113 PYFTSSFDHENRVKKSAK 124
            +F    D + R+KKS K
Sbjct: 100 MFFE---DLDRRIKKSRK 114

[Close]

BLAST of Carg01927 vs. TrEMBL
Match: tr|A0A1S3BFF9|A0A1S3BFF9_CUCME (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=LOC103489420 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.4e-51
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSS--MAADHGGVIIQKERID-NIDGGAEELCC 60
           MST+LDLRRTLLE+VRRP IKLQIP P ++  M  D GGVIIQK+RID   DGGAEELCC
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPLPSTAVVMGGDRGGVIIQKDRIDKGEDGGAEELCC 60

Query: 61  RTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENR 120
           RTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV R+EIEPY  +SFDHE+R
Sbjct: 61  RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNASFDHEDR 120

Query: 121 VKKSAKISFCECK 131
           V+KSAK SFCECK
Sbjct: 121 VRKSAKRSFCECK 133

[Close]

BLAST of Carg01927 vs. TrEMBL
Match: tr|A0A0A0KRI0|A0A0A0KRI0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G621910 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.9e-42
Identity = 93/134 (69.40%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIP----RPLSSMAADHGGVIIQKERIDNIDGGAEELC 60
           MST+LDLRRTLLE+VRRP IKLQIP                       +D  DGGAEEL 
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPXXXXXXXXXXXXXXXXXXXXXXXVDEEDGGAEELS 60

Query: 61  CRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHEN 120
           CRTPTSAENKIP V QCPPAPRKRKRPP+CRRRL+ELEFVEIV R+EIEPY  SSFDHE+
Sbjct: 61  CRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNSSFDHED 120

Query: 121 RVKKSAKISFCECK 131
           RV+KSAK SFCECK
Sbjct: 121 RVRKSAKRSFCECK 134

[Close]

BLAST of Carg01927 vs. TrEMBL
Match: tr|A0A2I4DNM2|A0A2I4DNM2_9ROSI (cyclin-dependent protein kinase inhibitor SMR1-like OS=Juglans regia OX=51240 GN=LOC108981948 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.9e-19
Identity = 54/131 (41.22%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHG-GVIIQKERIDNIDGGAEELCCRT 60
           MSTDL+    L ++ R         +  + +A D G GV+++ E+ D+ +      CCRT
Sbjct: 1   MSTDLEFLHDLSKIPRLTVETKTTAQASNDIADDIGTGVLVEPEKEDDNE------CCRT 60

Query: 61  PTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVK 120
           PTS E++IPV+L CPPAPRK +R P+C+R+L EL+F EIV+ EE++ +F SSF++ + + 
Sbjct: 61  PTSKEHRIPVILDCPPAPRKPRRVPSCKRKLSELKFFEIVNPEEVDAFFRSSFENVSAIT 120

Query: 121 KSAKISFCECK 131
              + S C CK
Sbjct: 121 SVKRRSRCPCK 125

[Close]

BLAST of Carg01927 vs. TrEMBL
Match: tr|A0A2K1YZ06|A0A2K1YZ06_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G231600v3 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60
           MSTDL+L   L  +  RPAIK++  +  S  A D    IIQ+E  +  D       C+TP
Sbjct: 1   MSTDLELLHDLPRIQVRPAIKIETLQ--SCSATDGNKAIIQQENSETDDD------CQTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFD 114
            S E+KIP VL CPPAPRK KR  +C+R+L E++F EIV+ EE++ +F SSF+
Sbjct: 61  KSEEHKIPAVLSCPPAPRKAKRNISCKRKLTEIDFFEIVNGEEVDSFFQSSFE 105

[Close]

BLAST of Carg01927 vs. TrEMBL
Match: tr|W9S397|W9S397_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001720 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-15
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDN------------- 60
           MSTDL+  + L + +R   I++Q P P  S       +I   +R+DN             
Sbjct: 1   MSTDLEFCQALPK-IRLSPIQIQTPEPSESKTEAARSII---QRLDNDRRNSCDNIKNED 60

Query: 61  -IDGGAEELC--CRTPTSAENKIPVVLQCPPAPRK--RKRPPTCRRRLIELEFVEIVSRE 120
            I    EE+   CRTPTSAE++IP +L CPPAPRK    R P+C+R+L EL+F ++V+RE
Sbjct: 61  IIYEEKEEINNECRTPTSAEHRIPAILSCPPAPRKPATARAPSCKRKLSELDFFDVVNRE 120

Query: 121 EIEPYFTSSFDHENRVKKSAKISFCECK 131
           EI+ +F SSF        SAK S C CK
Sbjct: 121 EIDRFFRSSF--AKAATGSAKRSCCPCK 142

The following BLAST results are available for this feature:

BLAST of Carg01927 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957068.1	8.7e-67	100.00	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata]	[more]
XP_022992922.1	4.3e-66	99.23	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima]	[more]
XP_023531359.1	2.8e-65	98.46	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_008446800.1	6.7e-51	78.95	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo]	[more]
XP_022139169.1	3.6e-44	78.29	cyclin-dependent protein kinase inhibitor SMR1-like [Momordica charantia]	[more]

BLAST of Carg01927 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40460.1	3.6e-06	53.85	unknown protein	[more]
AT5G02420.1	2.3e-05	43.59	unknown protein	[more]
AT2G37610.1	2.6e-04	53.85	unknown protein	[more]
AT1G60783.1	4.4e-04	58.62	unknown protein	[more]

BLAST of Carg01927 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q29Q81\|SMR6_ARATH	6.4e-05	53.85	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q9LZ60\|SMR3_ARATH	4.2e-04	43.59	Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg01927 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFF9\|A0A1S3BFF9_CUCME	4.4e-51	78.95	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0KRI0\|A0A0A0KRI0_CUCSA	4.9e-42	69.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G621910 PE=4 SV=1	[more]
tr\|A0A2I4DNM2\|A0A2I4DNM2_9ROSI	9.9e-19	41.22	cyclin-dependent protein kinase inhibitor SMR1-like OS=Juglans regia OX=51240 GN...	[more]
tr\|A0A2K1YZ06\|A0A2K1YZ06_POPTR	1.6e-16	46.90	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G231600v3 PE=...	[more]
tr\|W9S397\|W9S397_9ROSA	6.7e-15	41.22	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001720 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01927-RA	Carg01927-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142:SF13	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SIM-RELATED	coord: 1..123
None	No IPR available	PANTHER	PTHR33142	FAMILY NOT NAMED	coord: 1..123

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01927	Cla020520	Watermelon (97103) v1	carwmB0842
Carg01927	Cla013726	Watermelon (97103) v1	carwmB0838
Carg01927	Csa5G621910	Cucumber (Chinese Long) v2	carcuB0857
Carg01927	MELO3C019852	Melon (DHL92) v3.5.1	carmeB0836
Carg01927	MELO3C012381	Melon (DHL92) v3.5.1	carmeB0834
Carg01927	ClCG08G007940	Watermelon (Charleston Gray)	carwcgB0819
Carg01927	ClCG05G021460	Watermelon (Charleston Gray)	carwcgB0816
Carg01927	Cucsa.308840	Cucumber (Gy14) v1	carcgyB0969
Carg01927	CmaCh18G009240	Cucurbita maxima (Rimu)	carcmaB1167
Carg01927	CmaCh04G014020	Cucurbita maxima (Rimu)	carcmaB1170
Carg01927	CmaCh04G025410	Cucurbita maxima (Rimu)	carcmaB1168
Carg01927	CmoCh18G009250	Cucurbita moschata (Rifu)	carcmoB1135
Carg01927	CmoCh04G026600	Cucurbita moschata (Rifu)	carcmoB1136
Carg01927	CmoCh04G014760	Cucurbita moschata (Rifu)	carcmoB1138
Carg01927	Lsi04G001190	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01927	Cp4.1LG01g24760	Cucurbita pepo (Zucchini)	carcpeB1176
Carg01927	Cp4.1LG09g03890	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01927	Cp4.1LG01g14440	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01927	MELO3C012381.2	Melon (DHL92) v3.6.1	carmedB0846
Carg01927	MELO3C019852.2	Melon (DHL92) v3.6.1	carmedB0848
Carg01927	CsaV3_5G035790	Cucumber (Chinese Long) v3	carcucB0881
Carg01927	Cla97C05G103170	Watermelon (97103) v2	carwmbB0878
Carg01927	Bhi07G000675	Wax gourd	carwgoB0979

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01927	Carg20724	Silver-seed gourd	carcarB472
Carg01927	Carg04594	Silver-seed gourd	carcarB578

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01927	Silver-seed gourd	carcarB309
Carg01927	Cucumber (Gy14) v2	carcgybB0831
Carg01927	Cucurbita maxima (Rimu)	carcmaB1163
Carg01927	Cucurbita moschata (Rifu)	carcmoB1131
Carg01927	Wild cucumber (PI 183967)	carcpiB0877
Carg01927	Bottle gourd (USVL1VR-Ls)	carlsiB769
Carg01927	Watermelon (97103) v2	carwmbB0881
Carg01927	Wax gourd	carwgoB0977