CmoCh04G014760 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G014760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 7550014 .. 7550406 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAATTGATAACATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCCGCTAAAATAAGCTTCTGCGAGTGTAAATGA

mRNA sequence

ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAATTGATAACATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCCGCTAAAATAAGCTTCTGCGAGTGTAAATGA

Coding sequence (CDS)

ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAATTGATAACATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCCGCTAAAATAAGCTTCTGCGAGTGTAAATGA
BLAST of CmoCh04G014760 vs. Swiss-Prot
Match: SMR1_ARATH (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana GN=SMR1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07
Identity = 31/92 (33.70%), Postives = 50/92 (54.35%), Query Frame = 1

Query: 42  KERIDNIDGGAEELCCRTPTSAENKIPVVLQCPPAPRKRKRPP-------------TCRR 101
           K + D  D   ++L C TPTS E+KIP V+  PP P ++ RPP             +C+R
Sbjct: 26  KTKKDEGDDDEDDLRCSTPTSQEHKIPAVVDSPPPPPRKPRPPPSAPSATAALMIRSCKR 85

Query: 102 RLIELEFVEIVSREEIEPYFTSSFDHENRVKK 121
           +L+      I++REEI+ +F+S ++  +   K
Sbjct: 86  KLLVSTCEIIMNREEIDRFFSSVYNETSTTAK 117

BLAST of CmoCh04G014760 vs. TrEMBL
Match: A0A0A0KRI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621910 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.3e-52
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAA----DHGGVIIQKERIDNIDGGAEELC 60
           MST+LDLRRTLLE+VRRP IKLQIP P +S +     DHGGVIIQK+R+D  DGGAEEL 
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPPPTTSTSVMAGGDHGGVIIQKDRVDEEDGGAEELS 60

Query: 61  CRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHEN 120
           CRTPTSAENKIP V QCPPAPRKRKRPP+CRRRL+ELEFVEIV R+EIEPY  SSFDHE+
Sbjct: 61  CRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNSSFDHED 120

Query: 121 RVKKSAKISFCECK 131
           RV+KSAK SFCECK
Sbjct: 121 RVRKSAKRSFCECK 134

BLAST of CmoCh04G014760 vs. TrEMBL
Match: B9HUW5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23800g PE=4 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60
           MSTDL+L   L  +  RPAIK++  +  S  A D    IIQ+E  +  D       C+TP
Sbjct: 1   MSTDLELLHDLPRIQVRPAIKIETLQSCS--ATDGNKAIIQQENSETDDD------CQTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFD 114
            S E+KIP VL CPPAPRK KR  +C+R+L E++F EIV+ EE++ +F SSF+
Sbjct: 61  KSEEHKIPAVLSCPPAPRKAKRNISCKRKLTEIDFFEIVNGEEVDSFFQSSFE 105

BLAST of CmoCh04G014760 vs. TrEMBL
Match: W9S397_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001720 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.7e-15
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDN------------- 60
           MSTDL+  + L ++   P I++Q P P  S       +I   +R+DN             
Sbjct: 1   MSTDLEFCQALPKIRLSP-IQIQTPEPSESKTEAARSII---QRLDNDRRNSCDNIKNED 60

Query: 61  -IDGGAEELC--CRTPTSAENKIPVVLQCPPAPRK--RKRPPTCRRRLIELEFVEIVSRE 120
            I    EE+   CRTPTSAE++IP +L CPPAPRK    R P+C+R+L EL+F ++V+RE
Sbjct: 61  IIYEEKEEINNECRTPTSAEHRIPAILSCPPAPRKPATARAPSCKRKLSELDFFDVVNRE 120

Query: 121 EIEPYFTSSFDHENRVKKSAKISFCECK 131
           EI+ +F SSF        SAK S C CK
Sbjct: 121 EIDRFFRSSF--AKAATGSAKRSCCPCK 142

BLAST of CmoCh04G014760 vs. TrEMBL
Match: U5G4W0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60
           MSTDL+ R+ L  +  R A+K +  +  S  A D    II++E  +  D       C+TP
Sbjct: 1   MSTDLESRQDLPRIQVR-AVKTETLQSCS--ATDDKETIIKQENSETDD-------CQTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFD 114
            S E+KIP VL CPPAPRK +R  +C+R+L ELEF EIV+REE++ +F SSF+
Sbjct: 61  KSEEHKIPAVLSCPPAPRKPRRSFSCKRKLTELEFFEIVNREEVDSFFQSSFE 103

BLAST of CmoCh04G014760 vs. TrEMBL
Match: A5BYH3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043216 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-13
Identity = 53/130 (40.77%), Postives = 71/130 (54.62%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60
           MSTDL+  +  L  ++       I  PL S           K   DN    AE   CRTP
Sbjct: 1   MSTDLEFHQASLTPIK-------IEAPLGS-----------KIESDN----AETSPCRTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120
           TSAE+KIPV+L CPPAPRK +R   C+RR+ E +F EIV+R+E+E +F SS +     ++
Sbjct: 61  TSAEHKIPVILTCPPAPRKPRRVVRCKRRIREFDFFEIVNRDEVEEFFRSSLEVGEAKRR 102

Query: 121 SAKISFCECK 131
                 C+CK
Sbjct: 121 ------CKCK 102

BLAST of CmoCh04G014760 vs. TAIR10
Match: AT3G10525.1 (AT3G10525.1 LOSS OF GIANT CELLS FROM ORGANS)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-08
Identity = 31/92 (33.70%), Postives = 50/92 (54.35%), Query Frame = 1

Query: 42  KERIDNIDGGAEELCCRTPTSAENKIPVVLQCPPAPRKRKRPP-------------TCRR 101
           K + D  D   ++L C TPTS E+KIP V+  PP P ++ RPP             +C+R
Sbjct: 26  KTKKDEGDDDEDDLRCSTPTSQEHKIPAVVDSPPPPPRKPRPPPSAPSATAALMIRSCKR 85

Query: 102 RLIELEFVEIVSREEIEPYFTSSFDHENRVKK 121
           +L+      I++REEI+ +F+S ++  +   K
Sbjct: 86  KLLVSTCEIIMNREEIDRFFSSVYNETSTTAK 117

BLAST of CmoCh04G014760 vs. TAIR10
Match: AT5G40460.1 (AT5G40460.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.6e-06
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1

Query: 53 EELCCRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLI 92
          EE C  TPT+ E KIP +L+CPPAPRKR+    CR  ++
Sbjct: 56 EEECSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVV 94

BLAST of CmoCh04G014760 vs. NCBI nr
Match: gi|778706436|ref|XP_011655851.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 9.0e-52
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAA----DHGGVIIQKERIDNIDGGAEELC 60
           MST+LDLRRTLLE+VRRP IKLQIP P +S +     DHGGVIIQK+R+D  DGGAEEL 
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPPPTTSTSVMAGGDHGGVIIQKDRVDEEDGGAEELS 60

Query: 61  CRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHEN 120
           CRTPTSAENKIP V QCPPAPRKRKRPP+CRRRL+ELEFVEIV R+EIEPY  SSFDHE+
Sbjct: 61  CRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNSSFDHED 120

Query: 121 RVKKSAKISFCECK 131
           RV+KSAK SFCECK
Sbjct: 121 RVRKSAKRSFCECK 134

BLAST of CmoCh04G014760 vs. NCBI nr
Match: gi|659091912|ref|XP_008446800.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-51
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSS--MAADHGGVIIQKERIDN-IDGGAEELCC 60
           MST+LDLRRTLLE+VRRP IKLQIP P ++  M  D GGVIIQK+RID   DGGAEELCC
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPLPSTAVVMGGDRGGVIIQKDRIDKGEDGGAEELCC 60

Query: 61  RTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENR 120
           RTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV R+EIEPY  +SFDHE+R
Sbjct: 61  RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNASFDHEDR 120

Query: 121 VKKSAKISFCECK 131
           V+KSAK SFCECK
Sbjct: 121 VRKSAKRSFCECK 133

BLAST of CmoCh04G014760 vs. NCBI nr
Match: gi|566192441|ref|XP_002316411.2| (hypothetical protein POPTR_0010s23800g [Populus trichocarpa])

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60
           MSTDL+L   L  +  RPAIK++  +  S  A D    IIQ+E  +  D       C+TP
Sbjct: 1   MSTDLELLHDLPRIQVRPAIKIETLQSCS--ATDGNKAIIQQENSETDDD------CQTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFD 114
            S E+KIP VL CPPAPRK KR  +C+R+L E++F EIV+ EE++ +F SSF+
Sbjct: 61  KSEEHKIPAVLSCPPAPRKAKRNISCKRKLTEIDFFEIVNGEEVDSFFQSSFE 105

BLAST of CmoCh04G014760 vs. NCBI nr
Match: gi|1009119912|ref|XP_015876638.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 92.4 bits (228), Expect = 6.1e-16
Identity = 57/133 (42.86%), Postives = 79/133 (59.40%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERI--DNIDGGAEELCCR 60
           MSTDL+L + L +V  +    +++     S +AD  G +I K+       DG   + C R
Sbjct: 1   MSTDLELCQELPKVSLQ---SIRVRTQKGSESADTNGSVIPKQDFKGQGDDGQDSDQCPR 60

Query: 61  TPTSAENKIPVVLQCPPAPRKRK-RPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENR 120
           TPTS E++IP +L CPPAPRK K R   C+R+L EL+F EIV R+E++ +F SSF+    
Sbjct: 61  TPTSKEHRIPELLTCPPAPRKPKTRAVQCKRKLTELKFFEIVKRDEVDSFFRSSFEVSGI 120

Query: 121 VKKSAKISFCECK 131
              SAK S C CK
Sbjct: 121 NGSSAKRSCCSCK 130

BLAST of CmoCh04G014760 vs. NCBI nr
Match: gi|703138808|ref|XP_010106827.1| (hypothetical protein L484_001720 [Morus notabilis])

HSP 1 Score: 89.0 bits (219), Expect = 6.8e-15
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDN------------- 60
           MSTDL+  + L ++   P I++Q P P  S       +I   +R+DN             
Sbjct: 1   MSTDLEFCQALPKIRLSP-IQIQTPEPSESKTEAARSII---QRLDNDRRNSCDNIKNED 60

Query: 61  -IDGGAEELC--CRTPTSAENKIPVVLQCPPAPRK--RKRPPTCRRRLIELEFVEIVSRE 120
            I    EE+   CRTPTSAE++IP +L CPPAPRK    R P+C+R+L EL+F ++V+RE
Sbjct: 61  IIYEEKEEINNECRTPTSAEHRIPAILSCPPAPRKPATARAPSCKRKLSELDFFDVVNRE 120

Query: 121 EIEPYFTSSFDHENRVKKSAKISFCECK 131
           EI+ +F SSF        SAK S C CK
Sbjct: 121 EIDRFFRSSF--AKAATGSAKRSCCPCK 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SMR1_ARATH2.3e-0733.70Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana GN=SMR1 P... [more]
Match NameE-valueIdentityDescription
A0A0A0KRI0_CUCSA6.3e-5278.36Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621910 PE=4 SV=1[more]
B9HUW5_POPTR1.1e-1646.90Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23800g PE=4 SV=2[more]
W9S397_9ROSA4.7e-1541.22Uncharacterized protein OS=Morus notabilis GN=L484_001720 PE=4 SV=1[more]
U5G4W0_POPTR1.4e-1446.02Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1[more]
A5BYH3_VITVI4.4e-1340.77Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043216 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G10525.11.3e-0833.70 LOSS OF GIANT CELLS FROM ORGANS[more]
AT5G40460.13.6e-0653.85 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778706436|ref|XP_011655851.1|9.0e-5278.36PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis sativus][more]
gi|659091912|ref|XP_008446800.1|3.4e-5178.95PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo][more]
gi|566192441|ref|XP_002316411.2|1.6e-1646.90hypothetical protein POPTR_0010s23800g [Populus trichocarpa][more]
gi|1009119912|ref|XP_015876638.1|6.1e-1642.86PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like isoform X1 [Zizip... [more]
gi|703138808|ref|XP_010106827.1|6.8e-1541.22hypothetical protein L484_001720 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G014760.1CmoCh04G014760.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33142FAMILY NOT NAMEDcoord: 40..113
score: 2.1
NoneNo IPR availablePANTHERPTHR33142:SF1CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SIM-RELATEDcoord: 40..113
score: 2.1

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G014760CmoCh18G009250Cucurbita moschata (Rifu)cmocmoB336