Cla020520 (gene) Watermelon (97103) v1

NameCla020520
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 29090193 .. 29090570 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACAGACCTCGATCTCCGACGGACATTGCTGGAAATCGTCCGCCGTCCGGCGATCAACCTTCAAATTCCACGGCCGTCGACTTCAATGAGCGCCGATCACGGCGGTGTGATAATTCAGAAAGACAGAATCGACGACGAAGAATTATGTTGCCGTACACCGACGTCGGCAGAGAACAAGATTCCGGCGGTGGTGCAATGTCCGCCGGCGCCACGTAAGCGGAAGAGACCGCCGAGTTGTAGAAGAAGATTAATGGAGCTTGAATTTGTGGAGATCGTGAATAGAGAAGAAATCGAACCGTATTTAAGATCAAGTTTCGATCACGAAGACAGAGTAAGAAAATCAGCTAAAAGAAGCTTTTGCGAGTGTAAATGA

mRNA sequence

ATGTCCACAGACCTCGATCTCCGACGGACATTGCTGGAAATCGTCCGCCGTCCGGCGATCAACCTTCAAATTCCACGGCCGTCGACTTCAATGAGCGCCGATCACGGCGGTGTGATAATTCAGAAAGACAGAATCGACGACGAAGAATTATGTTGCCGTACACCGACGTCGGCAGAGAACAAGATTCCGGCGGTGGTGCAATGTCCGCCGGCGCCACGTAAGCGGAAGAGACCGCCGAGTTGTAGAAGAAGATTAATGGAGCTTGAATTTGTGGAGATCGTGAATAGAGAAGAAATCGAACCGTATTTAAGATCAAGTTTCGATCACGAAGACAGAGTAAGAAAATCAGCTAAAAGAAGCTTTTGCGAGTGTAAATGA

Coding sequence (CDS)

ATGTCCACAGACCTCGATCTCCGACGGACATTGCTGGAAATCGTCCGCCGTCCGGCGATCAACCTTCAAATTCCACGGCCGTCGACTTCAATGAGCGCCGATCACGGCGGTGTGATAATTCAGAAAGACAGAATCGACGACGAAGAATTATGTTGCCGTACACCGACGTCGGCAGAGAACAAGATTCCGGCGGTGGTGCAATGTCCGCCGGCGCCACGTAAGCGGAAGAGACCGCCGAGTTGTAGAAGAAGATTAATGGAGCTTGAATTTGTGGAGATCGTGAATAGAGAAGAAATCGAACCGTATTTAAGATCAAGTTTCGATCACGAAGACAGAGTAAGAAAATCAGCTAAAAGAAGCTTTTGCGAGTGTAAATGA

Protein sequence

MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDDEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREEIEPYLRSSFDHEDRVRKSAKRSFCECK
BLAST of Cla020520 vs. Swiss-Prot
Match: SMR1_ARATH (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana GN=SMR1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-09
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1

Query: 41  QKDRIDDEE--LCCRTPTSAENKIPAVVQCPPAPRKRKRPP-------------SCRRRL 100
           +KD  DD+E  L C TPTS E+KIPAVV  PP P ++ RPP             SC+R+L
Sbjct: 28  KKDEGDDDEDDLRCSTPTSQEHKIPAVVDSPPPPPRKPRPPPSAPSATAALMIRSCKRKL 87

Query: 101 MELEFVEIVNREEIEPYLRSSFDHEDRVRKSAKRSFCEC 125
           +      I+NREEI+ +  S ++      K  +RS+  C
Sbjct: 88  LVSTCEIIMNREEIDRFFSSVYNETSTTAK-RRRSYPYC 125

BLAST of Cla020520 vs. Swiss-Prot
Match: SMR1_ORYSJ (Cyclin-dependent protein kinase inhibitor SMR1 OS=Oryza sativa subsp. japonica GN=SMR1 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.2e-06
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1

Query: 51  CCRTPTSAENKIPAVVQCPPAPRKRKRPPS-CRRRLMELEFVEIVNREEIE 101
           CCRTPT  E+ + A   CPPAPRK + P + CR+RL E+E + +   EE+E
Sbjct: 45  CCRTPTGGESNLKAPGTCPPAPRKPRAPAAPCRKRLFEVEVLSL-RLEELE 94

BLAST of Cla020520 vs. TrEMBL
Match: A0A0A0KRI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621910 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.5e-54
Identity = 111/134 (82.84%), Postives = 117/134 (87.31%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSA----DHGGVIIQKDRIDDE-----ELC 60
           MST+LDLRRTLLEIVRRP I LQIP P+TS S     DHGGVIIQKDR+D+E     EL 
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPPPTTSTSVMAGGDHGGVIIQKDRVDEEDGGAEELS 60

Query: 61  CRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREEIEPYLRSSFDHED 120
           CRTPTSAENKIPAV QCPPAPRKRKRPPSCRRRLMELEFVEIV+R+EIEPYL SSFDHED
Sbjct: 61  CRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNSSFDHED 120

Query: 121 RVRKSAKRSFCECK 126
           RVRKSAKRSFCECK
Sbjct: 121 RVRKSAKRSFCECK 134

BLAST of Cla020520 vs. TrEMBL
Match: W9S397_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001720 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.8e-19
Identity = 65/146 (44.52%), Postives = 86/146 (58.90%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQK---------DRIDDEELC 60
           MSTDL+  + L +I   P I +Q P PS S + +    IIQ+         D I +E++ 
Sbjct: 1   MSTDLEFCQALPKIRLSP-IQIQTPEPSESKT-EAARSIIQRLDNDRRNSCDNIKNEDII 60

Query: 61  ----------CRTPTSAENKIPAVVQCPPAPRK--RKRPPSCRRRLMELEFVEIVNREEI 120
                     CRTPTSAE++IPA++ CPPAPRK    R PSC+R+L EL+F ++VNREEI
Sbjct: 61  YEEKEEINNECRTPTSAEHRIPAILSCPPAPRKPATARAPSCKRKLSELDFFDVVNREEI 120

Query: 121 EPYLRSSFDHEDRVRKSAKRSFCECK 126
           + + RSSF        SAKRS C CK
Sbjct: 121 DRFFRSSF--AKAATGSAKRSCCPCK 142

BLAST of Cla020520 vs. TrEMBL
Match: B9HUW5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23800g PE=4 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 6.3e-17
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDDEELCCRTPTSAEN 60
           MSTDL+L   L  I  RPAI ++  + S S +  +  +I Q++   D++  C+TP S E+
Sbjct: 1   MSTDLELLHDLPRIQVRPAIKIETLQ-SCSATDGNKAIIQQENSETDDD--CQTPKSEEH 60

Query: 61  KIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREEIEPYLRSSFD 109
           KIPAV+ CPPAPRK KR  SC+R+L E++F EIVN EE++ + +SSF+
Sbjct: 61  KIPAVLSCPPAPRKAKRNISCKRKLTEIDFFEIVNGEEVDSFFQSSFE 105

BLAST of Cla020520 vs. TrEMBL
Match: A0A0A0LSQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G384460 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEIVRRPAINLQIPRPSTS----MSADHGGVIIQKDRIDDEELCCRTPT 60
           MS DL+  + L +I R P      P+PS S     S+DH          D +   CRTPT
Sbjct: 1   MSMDLEFPKNLPKI-RLPLQVRSPPKPSLSDNIIPSSDHDS--------DLDRRSCRTPT 60

Query: 61  SAENKIPAVVQCPPAPRKRKRPP-SCRRRL-MELEFVEIVNREEIEPYLRSSFDHEDRVR 120
           SAE+KIP ++ CP AP+K KRPP  C+R+L MEL+F EIVN+EE++ + RS++D E    
Sbjct: 61  SAEHKIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSPT 119

Query: 121 KSAKRSFC 123
              KRS C
Sbjct: 121 APPKRSCC 119

BLAST of Cla020520 vs. TrEMBL
Match: U5G4W0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSA---DHGGVIIQKDRIDDEELCCRTPTS 60
           MSTDL+ R+ L      P I ++  +  T  S    D    II+++  + ++  C+TP S
Sbjct: 1   MSTDLESRQDL------PRIQVRAVKTETLQSCSATDDKETIIKQENSETDD--CQTPKS 60

Query: 61  AENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREEIEPYLRSSFD 109
            E+KIPAV+ CPPAPRK +R  SC+R+L ELEF EIVNREE++ + +SSF+
Sbjct: 61  EEHKIPAVLSCPPAPRKPRRSFSCKRKLTELEFFEIVNREEVDSFFQSSFE 103

BLAST of Cla020520 vs. NCBI nr
Match: gi|659091912|ref|XP_008446800.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo])

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-54
Identity = 112/133 (84.21%), Postives = 117/133 (87.97%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEIVRRPAINLQIPRPSTS--MSADHGGVIIQKDRIDD------EELCC 60
           MST+LDLRRTLLEIVRRP I LQIP PST+  M  D GGVIIQKDRID       EELCC
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPLPSTAVVMGGDRGGVIIQKDRIDKGEDGGAEELCC 60

Query: 61  RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREEIEPYLRSSFDHEDR 120
           RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIV+R+EIEPYL +SFDHEDR
Sbjct: 61  RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNASFDHEDR 120

Query: 121 VRKSAKRSFCECK 126
           VRKSAKRSFCECK
Sbjct: 121 VRKSAKRSFCECK 133

BLAST of Cla020520 vs. NCBI nr
Match: gi|778706436|ref|XP_011655851.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 9.3e-54
Identity = 111/134 (82.84%), Postives = 117/134 (87.31%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSA----DHGGVIIQKDRIDDE-----ELC 60
           MST+LDLRRTLLEIVRRP I LQIP P+TS S     DHGGVIIQKDR+D+E     EL 
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPPPTTSTSVMAGGDHGGVIIQKDRVDEEDGGAEELS 60

Query: 61  CRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREEIEPYLRSSFDHED 120
           CRTPTSAENKIPAV QCPPAPRKRKRPPSCRRRLMELEFVEIV+R+EIEPYL SSFDHED
Sbjct: 61  CRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNSSFDHED 120

Query: 121 RVRKSAKRSFCECK 126
           RVRKSAKRSFCECK
Sbjct: 121 RVRKSAKRSFCECK 134

BLAST of Cla020520 vs. NCBI nr
Match: gi|703138808|ref|XP_010106827.1| (hypothetical protein L484_001720 [Morus notabilis])

HSP 1 Score: 101.7 bits (252), Expect = 9.7e-19
Identity = 65/146 (44.52%), Postives = 86/146 (58.90%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQK---------DRIDDEELC 60
           MSTDL+  + L +I   P I +Q P PS S + +    IIQ+         D I +E++ 
Sbjct: 1   MSTDLEFCQALPKIRLSP-IQIQTPEPSESKT-EAARSIIQRLDNDRRNSCDNIKNEDII 60

Query: 61  ----------CRTPTSAENKIPAVVQCPPAPRK--RKRPPSCRRRLMELEFVEIVNREEI 120
                     CRTPTSAE++IPA++ CPPAPRK    R PSC+R+L EL+F ++VNREEI
Sbjct: 61  YEEKEEINNECRTPTSAEHRIPAILSCPPAPRKPATARAPSCKRKLSELDFFDVVNREEI 120

Query: 121 EPYLRSSFDHEDRVRKSAKRSFCECK 126
           + + RSSF        SAKRS C CK
Sbjct: 121 DRFFRSSF--AKAATGSAKRSCCPCK 142

BLAST of Cla020520 vs. NCBI nr
Match: gi|1009119912|ref|XP_015876638.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 99.0 bits (245), Expect = 6.3e-18
Identity = 62/136 (45.59%), Postives = 80/136 (58.82%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEIVRRPAINLQIPRPST---SMSADHGGVIIQK-------DRIDDEEL 60
           MSTDL+L + L      P ++LQ  R  T   S SAD  G +I K       D   D + 
Sbjct: 1   MSTDLELCQEL------PKVSLQSIRVRTQKGSESADTNGSVIPKQDFKGQGDDGQDSDQ 60

Query: 61  CCRTPTSAENKIPAVVQCPPAPRKRK-RPPSCRRRLMELEFVEIVNREEIEPYLRSSFDH 120
           C RTPTS E++IP ++ CPPAPRK K R   C+R+L EL+F EIV R+E++ + RSSF+ 
Sbjct: 61  CPRTPTSKEHRIPELLTCPPAPRKPKTRAVQCKRKLTELKFFEIVKRDEVDSFFRSSFEV 120

Query: 121 EDRVRKSAKRSFCECK 126
                 SAKRS C CK
Sbjct: 121 SGINGSSAKRSCCSCK 130

BLAST of Cla020520 vs. NCBI nr
Match: gi|566192441|ref|XP_002316411.2| (hypothetical protein POPTR_0010s23800g [Populus trichocarpa])

HSP 1 Score: 95.1 bits (235), Expect = 9.1e-17
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 1

Query: 1   MSTDLDLRRTLLEIVRRPAINLQIPRPSTSMSADHGGVIIQKDRIDDEELCCRTPTSAEN 60
           MSTDL+L   L  I  RPAI ++  + S S +  +  +I Q++   D++  C+TP S E+
Sbjct: 1   MSTDLELLHDLPRIQVRPAIKIETLQ-SCSATDGNKAIIQQENSETDDD--CQTPKSEEH 60

Query: 61  KIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREEIEPYLRSSFD 109
           KIPAV+ CPPAPRK KR  SC+R+L E++F EIVN EE++ + +SSF+
Sbjct: 61  KIPAVLSCPPAPRKAKRNISCKRKLTEIDFFEIVNGEEVDSFFQSSFE 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SMR1_ARATH1.8e-0939.39Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana GN=SMR1 P... [more]
SMR1_ORYSJ4.2e-0649.02Cyclin-dependent protein kinase inhibitor SMR1 OS=Oryza sativa subsp. japonica G... [more]
Match NameE-valueIdentityDescription
A0A0A0KRI0_CUCSA6.5e-5482.84Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621910 PE=4 SV=1[more]
W9S397_9ROSA6.8e-1944.52Uncharacterized protein OS=Morus notabilis GN=L484_001720 PE=4 SV=1[more]
B9HUW5_POPTR6.3e-1747.22Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23800g PE=4 SV=2[more]
A0A0A0LSQ6_CUCSA1.2e-1544.53Uncharacterized protein OS=Cucumis sativus GN=Csa_2G384460 PE=4 SV=1[more]
U5G4W0_POPTR1.6e-1545.05Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659091912|ref|XP_008446800.1|1.9e-5484.21PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo][more]
gi|778706436|ref|XP_011655851.1|9.3e-5482.84PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis sativus][more]
gi|703138808|ref|XP_010106827.1|9.7e-1944.52hypothetical protein L484_001720 [Morus notabilis][more]
gi|1009119912|ref|XP_015876638.1|6.3e-1845.59PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like isoform X1 [Zizip... [more]
gi|566192441|ref|XP_002316411.2|9.1e-1747.22hypothetical protein POPTR_0010s23800g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016310 phosphorylation
biological_process GO:0045839 negative regulation of mitotic nuclear division
biological_process GO:0032875 regulation of DNA endoreduplication
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0016301 kinase activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU45002watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020520Cla020520.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU45002WMU45002transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33142FAMILY NOT NAMEDcoord: 39..108
score: 7.6
NoneNo IPR availablePANTHERPTHR33142:SF1CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SIM-RELATEDcoord: 39..108
score: 7.6

The following gene(s) are paralogous to this gene:

None