Cp4.1LG09g03890 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g03890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG09 : 2436902 .. 2437306 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACAGGCCTCGATCTCCGACGCACTTTCCTCGAAACCGTCCGCCGTCGGGACCTCAACCTTCCAATTCCACGCCCGTCCTCATCAGCGCCCGATCACAGCGACACAATTCAAAAACAGAGTATCGACACCACCGCCACCGCCTCCGCCGCCGCCTCCGCCGAAGGAGAATTATGCTGCCGCACGCCGACTTCCGCAGAGAACAAGATTCCGGCGTTACTGCAATGTCCGCCGGCGCCGCGGAAGCGGAAAAGACCTCCGAGTTGTAGAAGAAGACTAATGGAGCTTGAATTCGTGCAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTGAATTCGAGTTTCGAACACGAAGACAGAGTTCGAAAATCCGCTAAACGAAGCTTCTGCGAATGTAAATGA

mRNA sequence

ATGTCCACAGGCCTCGATCTCCGACGCACTTTCCTCGAAACCGTCCGCCGTCGGGACCTCAACCTTCCAATTCCACGCCCGTCCTCATCAGCGCCCGATCACAGCGACACAATTCAAAAACAGAGTATCGACACCACCGCCACCGCCTCCGCCGCCGCCTCCGCCGAAGGAGAATTATGCTGCCGCACGCCGACTTCCGCAGAGAACAAGATTCCGGCGTTACTGCAATGTCCGCCGGCGCCGCGGAAGCGGAAAAGACCTCCGAGTTGTAGAAGAAGACTAATGGAGCTTGAATTCGTGCAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTGAATTCGAGTTTCGAACACGAAGACAGAGTTCGAAAATCCGCTAAACGAAGCTTCTGCGAATGTAAATGA

Coding sequence (CDS)

ATGTCCACAGGCCTCGATCTCCGACGCACTTTCCTCGAAACCGTCCGCCGTCGGGACCTCAACCTTCCAATTCCACGCCCGTCCTCATCAGCGCCCGATCACAGCGACACAATTCAAAAACAGAGTATCGACACCACCGCCACCGCCTCCGCCGCCGCCTCCGCCGAAGGAGAATTATGCTGCCGCACGCCGACTTCCGCAGAGAACAAGATTCCGGCGTTACTGCAATGTCCGCCGGCGCCGCGGAAGCGGAAAAGACCTCCGAGTTGTAGAAGAAGACTAATGGAGCTTGAATTCGTGCAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTGAATTCGAGTTTCGAACACGAAGACAGAGTTCGAAAATCCGCTAAACGAAGCTTCTGCGAATGTAAATGA

Protein sequence

MSTGLDLRRTFLETVRRRDLNLPIPRPSSSAPDHSDTIQKQSIDTTATASAAASAEGELCCRTPTSAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVSREEIEPYLNSSFEHEDRVRKSAKRSFCECK

Homology

[Close]

BLAST of Cp4.1LG09g03890 vs. Swiss-Prot
Match: SMR1_ARATH (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana GN=SMR1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.7e-06
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 1


Query: 56  EGELCCRTPTSAENKIPALLQCPPAPRKRKRPP-------------SCRRRLMELEFVQI 115
           E +L C TPTS E+KIPA++  PP P ++ RPP             SC+R+L+      I
Sbjct: 36  EDDLRCSTPTSQEHKIPAVVDSPPPPPRKPRPPPSAPSATAALMIRSCKRKLLVSTCEII 95

Query: 116 VSREEIEPYLNSSFEHEDRVRKSAKRSFCEC 134
           ++REEI+ + +S + +E       +RS+  C
Sbjct: 96  MNREEIDRFFSSVY-NETSTTAKRRRSYPYC 125

[Close]

BLAST of Cp4.1LG09g03890 vs. TrEMBL
Match: A0A0A0KRI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621910 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39
Identity = 97/140 (69.29%), Postives = 105/140 (75.00%), Query Frame = 1


Query: 1   MSTGLDLRRTFLETVRRRDLNLPIPRPSSSAP-----DHSDTI-QKQSIDTTATASAAAS 60
           MST LDLRRT LE VRR  + L IP P++S       DH   I QK  +D          
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPPPTTSTSVMAGGDHGGVIIQKDRVD-----EEDGG 60

Query: 61  AEGELCCRTPTSAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVSREEIEPYLNS 120
           AE EL CRTPTSAENKIPA+ QCPPAPRKRKRPPSCRRRLMELEFV+IV R+EIEPYLNS
Sbjct: 61  AE-ELSCRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNS 120

Query: 121 SFEHEDRVRKSAKRSFCECK 135
           SF+HEDRVRKSAKRSFCECK
Sbjct: 121 SFDHEDRVRKSAKRSFCECK 134

[Close]

BLAST of Cp4.1LG09g03890 vs. TrEMBL
Match: W9S397_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001720 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-13
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 1


Query: 1   MSTGLDLRRTFLETVRRRDLNLPIPRPSSSAPDHSDTI-------QKQSIDTTATASAAA 60
           MST L+  +  L  +R   + +  P PS S  + + +I       ++ S D         
Sbjct: 1   MSTDLEFCQA-LPKIRLSPIQIQTPEPSESKTEAARSIIQRLDNDRRNSCDNIKNEDIIY 60

Query: 61  SAEGELC--CRTPTSAENKIPALLQCPPAPRK--RKRPPSCRRRLMELEFVQIVSREEIE 120
             + E+   CRTPTSAE++IPA+L CPPAPRK    R PSC+R+L EL+F  +V+REEI+
Sbjct: 61  EEKEEINNECRTPTSAEHRIPAILSCPPAPRKPATARAPSCKRKLSELDFFDVVNREEID 120

Query: 121 PYLNSSFEHEDRVRKSAKRSFCECK 135
            +  SSF        SAKRS C CK
Sbjct: 121 RFFRSSF--AKAATGSAKRSCCPCK 142

[Close]

BLAST of Cp4.1LG09g03890 vs. TrEMBL
Match: U5G4W0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 53/121 (43.80%), Postives = 67/121 (55.37%), Query Frame = 1


Query: 1   MSTGL----DLRRTFLETVRRRDLNLPIPRPSSSAPDHSDTIQKQSIDTTATASAAASAE 60
           MST L    DL R  +  V+   L       S SA D  +TI KQ    T          
Sbjct: 1   MSTDLESRQDLPRIQVRAVKTETLQ------SCSATDDKETIIKQENSETDD-------- 60

Query: 61  GELCCRTPTSAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVSREEIEPYLNSSF 118
               C+TP S E+KIPA+L CPPAPRK +R  SC+R+L ELEF +IV+REE++ +  SSF
Sbjct: 61  ----CQTPKSEEHKIPAVLSCPPAPRKPRRSFSCKRKLTELEFFEIVNREEVDSFFQSSF 103

[Close]

BLAST of Cp4.1LG09g03890 vs. TrEMBL
Match: A0A067L9G3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01562 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 61  CRTPTSAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVSREEIEPYLNSSFE 118
           CRTPTS E+KIPA+L CPPAPRK +R PSC+R+L E +F QIV  +E+E    SSF+
Sbjct: 50  CRTPTSEEHKIPAVLSCPPAPRKPRRMPSCKRKLSEFDFFQIVKSQEVESLFRSSFD 106

[Close]

BLAST of Cp4.1LG09g03890 vs. TrEMBL
Match: A5BYH3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043216 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.6e-11
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 61  CRTPTSAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVSREEIEPYLNSSFEHED 120
           CRTPTSAE+KIP +L CPPAPRK +R   C+RR+ E +F +IV+R+E+E +  SS E  +
Sbjct: 35  CRTPTSAEHKIPVILTCPPAPRKPRRVVRCKRRIREFDFFEIVNRDEVEEFFRSSLEVGE 94

Query: 121 RVRKSAKRSFCECK 135
             R+      C+CK
Sbjct: 95  AKRR------CKCK 102

[Close]

BLAST of Cp4.1LG09g03890 vs. TAIR10
Match: AT3G10525.1 (AT3G10525.1 LOSS OF GIANT CELLS FROM ORGANS)

HSP 1 Score: 51.6 bits (122), Expect = 4.4e-07
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 1


Query: 56  EGELCCRTPTSAENKIPALLQCPPAPRKRKRPP-------------SCRRRLMELEFVQI 115
           E +L C TPTS E+KIPA++  PP P ++ RPP             SC+R+L+      I
Sbjct: 36  EDDLRCSTPTSQEHKIPAVVDSPPPPPRKPRPPPSAPSATAALMIRSCKRKLLVSTCEII 95

Query: 116 VSREEIEPYLNSSFEHEDRVRKSAKRSFCEC 134
           ++REEI+ + +S + +E       +RS+  C
Sbjct: 96  MNREEIDRFFSSVY-NETSTTAKRRRSYPYC 125

[Close]

BLAST of Cp4.1LG09g03890 vs. NCBI nr
Match: gi|659091912|ref|XP_008446800.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 96/138 (69.57%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MSTGLDLRRTFLETVRRRDLNLPIPRPSSSAPDHSDT----IQKQSIDTTATASAAASAE 60
           MST LDLRRT LE VRR  + L IP PS++     D     IQK  ID      A     
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPLPSTAVVMGGDRGGVIIQKDRIDKGEDGGAE---- 60

Query: 61  GELCCRTPTSAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVSREEIEPYLNSSF 120
            ELCCRTPTSAENKIPA++QCPPAPRKRKRPPSCRRRLMELEFV+IV R+EIEPYLN+SF
Sbjct: 61  -ELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNASF 120

Query: 121 EHEDRVRKSAKRSFCECK 135
           +HEDRVRKSAKRSFCECK
Sbjct: 121 DHEDRVRKSAKRSFCECK 133

[Close]

BLAST of Cp4.1LG09g03890 vs. NCBI nr
Match: gi|778706436|ref|XP_011655851.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 4.1e-39
Identity = 97/140 (69.29%), Postives = 105/140 (75.00%), Query Frame = 1


Query: 1   MSTGLDLRRTFLETVRRRDLNLPIPRPSSSAP-----DHSDTI-QKQSIDTTATASAAAS 60
           MST LDLRRT LE VRR  + L IP P++S       DH   I QK  +D          
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPPPTTSTSVMAGGDHGGVIIQKDRVD-----EEDGG 60

Query: 61  AEGELCCRTPTSAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVSREEIEPYLNS 120
           AE EL CRTPTSAENKIPA+ QCPPAPRKRKRPPSCRRRLMELEFV+IV R+EIEPYLNS
Sbjct: 61  AE-ELSCRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNS 120

Query: 121 SFEHEDRVRKSAKRSFCECK 135
           SF+HEDRVRKSAKRSFCECK
Sbjct: 121 SFDHEDRVRKSAKRSFCECK 134

[Close]

BLAST of Cp4.1LG09g03890 vs. NCBI nr
Match: gi|703138808|ref|XP_010106827.1| (hypothetical protein L484_001720 [Morus notabilis])

HSP 1 Score: 82.8 bits (203), Expect = 5.0e-13
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 1


Query: 1   MSTGLDLRRTFLETVRRRDLNLPIPRPSSSAPDHSDTI-------QKQSIDTTATASAAA 60
           MST L+  +  L  +R   + +  P PS S  + + +I       ++ S D         
Sbjct: 1   MSTDLEFCQA-LPKIRLSPIQIQTPEPSESKTEAARSIIQRLDNDRRNSCDNIKNEDIIY 60

Query: 61  SAEGELC--CRTPTSAENKIPALLQCPPAPRK--RKRPPSCRRRLMELEFVQIVSREEIE 120
             + E+   CRTPTSAE++IPA+L CPPAPRK    R PSC+R+L EL+F  +V+REEI+
Sbjct: 61  EEKEEINNECRTPTSAEHRIPAILSCPPAPRKPATARAPSCKRKLSELDFFDVVNREEID 120

Query: 121 PYLNSSFEHEDRVRKSAKRSFCECK 135
            +  SSF        SAKRS C CK
Sbjct: 121 RFFRSSF--AKAATGSAKRSCCPCK 142

[Close]

BLAST of Cp4.1LG09g03890 vs. NCBI nr
Match: gi|1009119912|ref|XP_015876638.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 82.0 bits (201), Expect = 8.5e-13
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 1


Query: 1   MSTGLDLRRTFLETVRRRDLNLPIPRPSSSAPDHSDTIQKQSIDTTATASAAASAEGELC 60
           MST L+L +  L  V  + + +   + S SA  +   I KQ              + + C
Sbjct: 1   MSTDLELCQE-LPKVSLQSIRVRTQKGSESADTNGSVIPKQDFK----GQGDDGQDSDQC 60

Query: 61  CRTPTSAENKIPALLQCPPAPRKRK-RPPSCRRRLMELEFVQIVSREEIEPYLNSSFEHE 120
            RTPTS E++IP LL CPPAPRK K R   C+R+L EL+F +IV R+E++ +  SSFE  
Sbjct: 61  PRTPTSKEHRIPELLTCPPAPRKPKTRAVQCKRKLTELKFFEIVKRDEVDSFFRSSFEVS 120

Query: 121 DRVRKSAKRSFCECK 135
                SAKRS C CK
Sbjct: 121 GINGSSAKRSCCSCK 130

[Close]

BLAST of Cp4.1LG09g03890 vs. NCBI nr
Match: gi|566182052|ref|XP_006379504.1| (hypothetical protein POPTR_0008s02960g [Populus trichocarpa])

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 53/121 (43.80%), Postives = 67/121 (55.37%), Query Frame = 1


Query: 1   MSTGL----DLRRTFLETVRRRDLNLPIPRPSSSAPDHSDTIQKQSIDTTATASAAASAE 60
           MST L    DL R  +  V+   L       S SA D  +TI KQ    T          
Sbjct: 1   MSTDLESRQDLPRIQVRAVKTETLQ------SCSATDDKETIIKQENSETDD-------- 60

Query: 61  GELCCRTPTSAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVSREEIEPYLNSSF 118
               C+TP S E+KIPA+L CPPAPRK +R  SC+R+L ELEF +IV+REE++ +  SSF
Sbjct: 61  ----CQTPKSEEHKIPAVLSCPPAPRKPRRSFSCKRKLTELEFFEIVNREEVDSFFQSSF 103

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g03890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SMR1_ARATH	7.7e-06	35.16	Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana GN=SMR1 P...	[more]

BLAST of Cp4.1LG09g03890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRI0_CUCSA	2.8e-39	69.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621910 PE=4 SV=1	[more]
W9S397_9ROSA	3.5e-13	40.00	Uncharacterized protein OS=Morus notabilis GN=L484_001720 PE=4 SV=1	[more]
U5G4W0_POPTR	1.5e-11	43.80	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1	[more]
A0A067L9G3_JATCU	3.3e-11	61.40	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01562 PE=4 SV=1	[more]
A5BYH3_VITVI	5.6e-11	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043216 PE=4 SV=1	[more]

BLAST of Cp4.1LG09g03890 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10525.1	4.4e-07	35.16	LOSS OF GIANT CELLS FROM ORGANS	[more]

BLAST of Cp4.1LG09g03890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091912\|ref\|XP_008446800.1\|	1.3e-40	69.57	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo]	[more]
gi\|778706436\|ref\|XP_011655851.1\|	4.1e-39	69.29	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis sativus]	[more]
gi\|703138808\|ref\|XP_010106827.1\|	5.0e-13	40.00	hypothetical protein L484_001720 [Morus notabilis]	[more]
gi\|1009119912\|ref\|XP_015876638.1\|	8.5e-13	40.74	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like isoform X1 [Zizip...	[more]
gi\|566182052\|ref\|XP_006379504.1\|	2.1e-11	43.80	hypothetical protein POPTR_0008s02960g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g03890.1	Cp4.1LG09g03890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142	FAMILY NOT NAMED	coord: 61..117 score: 4.9
None	No IPR available	PANTHER	PTHR33142:SF1	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SIM-RELATED	coord: 61..117 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g03890	Cucsa.308840	Cucumber (Gy14) v1	cgycpeB0804
Cp4.1LG09g03890	CmaCh18G009240	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g03890	CmaCh04G014020	Cucurbita maxima (Rimu)	cmacpeB700
Cp4.1LG09g03890	CmoCh18G009250	Cucurbita moschata (Rifu)	cmocpeB376
Cp4.1LG09g03890	CmoCh04G014760	Cucurbita moschata (Rifu)	cmocpeB651
Cp4.1LG09g03890	Cla020520	Watermelon (97103) v1	cpewmB031
Cp4.1LG09g03890	Csa5G621910	Cucumber (Chinese Long) v2	cpecuB041
Cp4.1LG09g03890	MELO3C012381	Melon (DHL92) v3.5.1	cpemeB024
Cp4.1LG09g03890	ClCG05G021460	Watermelon (Charleston Gray)	cpewcgB045
Cp4.1LG09g03890	Lsi04G001190	Bottle gourd (USVL1VR-Ls)	cpelsiB032
Cp4.1LG09g03890	MELO3C012381.2	Melon (DHL92) v3.6.1	cpemedB028
Cp4.1LG09g03890	CsaV3_5G035790	Cucumber (Chinese Long) v3	cpecucB0043
Cp4.1LG09g03890	Bhi07G000675	Wax gourd	cpewgoB0055
Cp4.1LG09g03890	Carg01927	Silver-seed gourd	carcpeB1169
Cp4.1LG09g03890	Carg04594	Silver-seed gourd	carcpeB0958
Cp4.1LG09g03890	Carg20724	Silver-seed gourd	carcpeB0677

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g03890	Cp4.1LG01g14440	Cucurbita pepo (Zucchini)	cpecpeB040

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g03890	Cucurbita pepo (Zucchini)	cpecpeB038
Cp4.1LG09g03890	Cucurbita maxima (Rimu)	cmacpeB699
Cp4.1LG09g03890	Wild cucumber (PI 183967)	cpecpiB036
Cp4.1LG09g03890	Watermelon (Charleston Gray)	cpewcgB055
Cp4.1LG09g03890	Watermelon (97103) v1	cpewmB023
Cp4.1LG09g03890	Cucumber (Gy14) v2	cgybcpeB581
Cp4.1LG09g03890	Cucumber (Gy14) v2	cgybcpeB709