Carg20724 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20724
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cyclin-dependent protein kinase inhibitor SMR1-like
Location	Cucurbita_argyrosperma_scaffold_107 : 395398 .. 395823 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACAGGCCTCGATCTCCGACGCACTTTCCTCGAAACCGTCCGCCGTCCGGGCCTCAACCTTCCAATTCCACGCCCGTCCTCATCAGCGCCCGATCACAGCGACACAATTCAGAAACAGAGTATCGACACCACCGCCACCGCCACCGCCACCGCCACCGCCTCCGCCGCCATCTCCGCCGAAGAAGAAGAATTATGCTGCCGCACGCCGACTTCCGCAGAGAACAAGATTCCGTCGTTACTGCAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGAGTTGTAGAAGAAGACTAATGGAGCTTGAATTCGTGCAGATCGTGAATAGAGAAGAGATCGAACCGTATTTGAATTCGAGTTTCGAACACGAAGACAGAGTTCGAAAATCCGCTAAACGAAGCTTCTGCGAATGTAAATGA

mRNA sequence

ATGTCCACAGGCCTCGATCTCCGACGCACTTTCCTCGAAACCGTCCGCCGTCCGGGCCTCAACCTTCCAATTCCACGCCCGTCCTCATCAGCGCCCGATCACAGCGACACAATTCAGAAACAGAGTATCGACACCACCGCCACCGCCACCGCCACCGCCACCGCCTCCGCCGCCATCTCCGCCGAAGAAGAAGAATTATGCTGCCGCACGCCGACTTCCGCAGAGAACAAGATTCCGTCGTTACTGCAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGAGTTGTAGAAGAAGACTAATGGAGCTTGAATTCGTGCAGATCGTGAATAGAGAAGAGATCGAACCGTATTTGAATTCGAGTTTCGAACACGAAGACAGAGTTCGAAAATCCGCTAAACGAAGCTTCTGCGAATGTAAATGA

Coding sequence (CDS)

ATGTCCACAGGCCTCGATCTCCGACGCACTTTCCTCGAAACCGTCCGCCGTCCGGGCCTCAACCTTCCAATTCCACGCCCGTCCTCATCAGCGCCCGATCACAGCGACACAATTCAGAAACAGAGTATCGACACCACCGCCACCGCCACCGCCACCGCCACCGCCTCCGCCGCCATCTCCGCCGAAGAAGAAGAATTATGCTGCCGCACGCCGACTTCCGCAGAGAACAAGATTCCGTCGTTACTGCAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGAGTTGTAGAAGAAGACTAATGGAGCTTGAATTCGTGCAGATCGTGAATAGAGAAGAGATCGAACCGTATTTGAATTCGAGTTTCGAACACGAAGACAGAGTTCGAAAATCCGCTAAACGAAGCTTCTGCGAATGTAAATGA

Protein sequence

MSTGLDLRRTFLETVRRPGLNLPIPRPSSSAPDHSDTIQKQSIDTTATATATATASAAISAEEEELCCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLNSSFEHEDRVRKSAKRSFCECK

Homology

[Close]

BLAST of Carg20724 vs. NCBI nr
Match: XP_023542380.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 2.8e-42
Identity = 110/141 (78.01%), Postives = 112/141 (79.43%), Query Frame = 0


Query: 1   MSTGLDLRRTFLETVRRPGLNLPIPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSTGLDLRRTFLETVRR  LNLPIPR                         XXXXXXXXX
Sbjct: 1   MSTGLDLRRTFLETVRRRDLNLPIPR-------PSSSAPDHSDTIQKQSIDXXXXXXXXX 60

Query: 61  XXXXXLCCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLN 120
           XXX  LCCRTPTSAENKIP+LLQCPPAPRKRKRPPSCRRRLMELEFVQIV+REEIEPYLN
Sbjct: 61  XXXGELCCRTPTSAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVSREEIEPYLN 120

Query: 121 SSFEHEDRVRKSAKRSFCECK 142
           SSFEHEDRVRKSAKRSFCECK
Sbjct: 121 SSFEHEDRVRKSAKRSFCECK 134

[Close]

BLAST of Carg20724 vs. NCBI nr
Match: XP_022945469.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata])

HSP 1 Score: 175.6 bits (444), Expect = 1.2e-40
Identity = 103/141 (73.05%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 1   MSTGLDLRRTFLETVRRPGLNLPIPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSTGLDLRRTFLETVRRP LNLPIPR                                XX
Sbjct: 1   MSTGLDLRRTFLETVRRPDLNLPIPR----------SSSSAPDHSDTIQKQSIDTTATXX 60

Query: 61  XXXXXLCCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLN 120
           XXXXX   RTPTS+ENKIP+LLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLN
Sbjct: 61  XXXXXXXXRTPTSSENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLN 120

Query: 121 SSFEHEDRVRKSAKRSFCECK 142
           SSFEHEDRVRKSAKRSFCECK
Sbjct: 121 SSFEHEDRVRKSAKRSFCECK 131

[Close]

BLAST of Carg20724 vs. NCBI nr
Match: XP_022968197.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 4.6e-37
Identity = 104/141 (73.76%), Postives = 106/141 (75.18%), Query Frame = 0


Query: 1   MSTGLDLRRTFLETVRRPGLNLPIPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSTGLDLRRTFLETVRRP LNLPIPR                          XXXXXXXX
Sbjct: 1   MSTGLDLRRTFLETVRRPDLNLPIPR-------PSSSAPDHSDTIQKQSIDTXXXXXXXX 60

Query: 61  XXXXXLCCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLN 120
           XXXXX        AENKIP+LLQCPPAPRKRKRPPSCRRRLMELEFVQIVNRE+IEPYLN
Sbjct: 61  XXXXXXXXXXXXXAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREDIEPYLN 120

Query: 121 SSFEHEDRVRKSAKRSFCECK 142
           SSFEHEDRVRKSAKRSFCECK
Sbjct: 121 SSFEHEDRVRKSAKRSFCECK 134

[Close]

BLAST of Carg20724 vs. NCBI nr
Match: XP_008446800.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 3.0e-36
Identity = 86/141 (60.99%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 1   MSTGLDLRRTFLETVRRPGLNLPIPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MST LDLRRT LE VRRP + L IP                                   
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIP--------LPSTAVVMGGDRGGVIIQKDRIDKGED 60

Query: 61  XXXXXLCCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLN 120
                LCCRTPTSAENKIP+++QCPPAPRKRKRPPSCRRRLMELEFV+IV+R+EIEPYLN
Sbjct: 61  GGAEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLN 120

Query: 121 SSFEHEDRVRKSAKRSFCECK 142
           +SF+HEDRVRKSAKRSFCECK
Sbjct: 121 ASFDHEDRVRKSAKRSFCECK 133

[Close]

BLAST of Carg20724 vs. NCBI nr
Match: XP_011655851.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis sativus] >KGN52223.1 hypothetical protein Csa_5G621910 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 5.6e-35
Identity = 109/141 (77.30%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 1   MSTGLDLRRTFLETVRRPGLNLPIPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MST LDLRRT LE VRRP + L IP       XXXXXXXXXXXXXXXXXXXXXXX     
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIP-------XXXXXXXXXXXXXXXXXXXXXXXVDEED 60

Query: 61  XXXXXLCCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLN 120
                L CRTPTSAENKIP++ QCPPAPRKRKRPPSCRRRLMELEFV+IV+R+EIEPYLN
Sbjct: 61  GGAEELSCRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLN 120

Query: 121 SSFEHEDRVRKSAKRSFCECK 142
           SSF+HEDRVRKSAKRSFCECK
Sbjct: 121 SSFDHEDRVRKSAKRSFCECK 134

[Close]

BLAST of Carg20724 vs. TAIR10
Match: AT5G40460.1 (unknown protein)

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-05
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 0


Query: 67  CCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLM 103
           C  TPT+ E KIP LL+CPPAPRKR+    CR  ++
Sbjct: 59  CSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVV 94

[Close]

BLAST of Carg20724 vs. Swiss-Prot
Match: sp|Q29Q81|SMR6_ARATH (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.5e-04
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 0


Query: 67  CCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLM 103
           C  TPT+ E KIP LL+CPPAPRKR+    CR  ++
Sbjct: 59  CSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVV 94

[Close]

BLAST of Carg20724 vs. TrEMBL
Match: tr|A0A1S3BFF9|A0A1S3BFF9_CUCME (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=LOC103489420 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.0e-36
Identity = 86/141 (60.99%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 1   MSTGLDLRRTFLETVRRPGLNLPIPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MST LDLRRT LE VRRP + L IP                                   
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIP--------LPSTAVVMGGDRGGVIIQKDRIDKGED 60

Query: 61  XXXXXLCCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLN 120
                LCCRTPTSAENKIP+++QCPPAPRKRKRPPSCRRRLMELEFV+IV+R+EIEPYLN
Sbjct: 61  GGAEELCCRTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLN 120

Query: 121 SSFEHEDRVRKSAKRSFCECK 142
           +SF+HEDRVRKSAKRSFCECK
Sbjct: 121 ASFDHEDRVRKSAKRSFCECK 133

[Close]

BLAST of Carg20724 vs. TrEMBL
Match: tr|A0A0A0KRI0|A0A0A0KRI0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G621910 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.7e-35
Identity = 109/141 (77.30%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 1   MSTGLDLRRTFLETVRRPGLNLPIPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MST LDLRRT LE VRRP + L IP       XXXXXXXXXXXXXXXXXXXXXXX     
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIP-------XXXXXXXXXXXXXXXXXXXXXXXVDEED 60

Query: 61  XXXXXLCCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLN 120
                L CRTPTSAENKIP++ QCPPAPRKRKRPPSCRRRLMELEFV+IV+R+EIEPYLN
Sbjct: 61  GGAEELSCRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLN 120

Query: 121 SSFEHEDRVRKSAKRSFCECK 142
           SSF+HEDRVRKSAKRSFCECK
Sbjct: 121 SSFDHEDRVRKSAKRSFCECK 134

[Close]

BLAST of Carg20724 vs. TrEMBL
Match: tr|A0A2I4DNM2|A0A2I4DNM2_9ROSI (cyclin-dependent protein kinase inhibitor SMR1-like OS=Juglans regia OX=51240 GN=LOC108981948 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 67  CCRTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLNSSFEHE 126
           CCRTPTS E++IP +L CPPAPRK +R PSC+R+L EL+F +IVN EE++ +  SSFE+ 
Sbjct: 51  CCRTPTSKEHRIPVILDCPPAPRKPRRVPSCKRKLSELKFFEIVNPEEVDAFFRSSFENV 110

Query: 127 DRVRKSAKRSFCECK 142
             +    +RS C CK
Sbjct: 111 SAITSVKRRSRCPCK 125

[Close]

BLAST of Carg20724 vs. TrEMBL
Match: tr|A0A2N9EMP5|A0A2N9EMP5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3706 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-14
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 69  RTPTSAENKIPSLLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREEIEPYLNSSFEHEDR 128
           RTPTS E++IP +L CPPAPRK KR PSC+R+L EL+F +IVNR+E++ +  SSFE +  
Sbjct: 56  RTPTSKEHRIPKILDCPPAPRKPKRVPSCKRKLSELQFFEIVNRDEVDSFFRSSFE-QLA 115

Query: 129 VRKSAKRSFCECK 142
           V  SAKR+ C CK
Sbjct: 116 VITSAKRNCCPCK 127

[Close]

BLAST of Carg20724 vs. TrEMBL
Match: tr|W9S397|W9S397_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001720 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 68  CRTPTSAENKIPSLLQCPPAPRK--RKRPPSCRRRLMELEFVQIVNREEIEPYLNSSFEH 127
           CRTPTSAE++IP++L CPPAPRK    R PSC+R+L EL+F  +VNREEI+ +  SSF  
Sbjct: 69  CRTPTSAEHRIPAILSCPPAPRKPATARAPSCKRKLSELDFFDVVNREEIDRFFRSSF-- 128

Query: 128 EDRVRKSAKRSFCECK 142
                 SAKRS C CK
Sbjct: 129 AKAATGSAKRSCCPCK 142

The following BLAST results are available for this feature:

BLAST of Carg20724 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542380.1	2.8e-42	78.01	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022945469.1	1.2e-40	73.05	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata]	[more]
XP_022968197.1	4.6e-37	73.76	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima]	[more]
XP_008446800.1	3.0e-36	60.99	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo]	[more]
XP_011655851.1	5.6e-35	77.30	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis sativus]...	[more]

BLAST of Carg20724 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40460.1	2.5e-05	55.56	unknown protein	[more]

BLAST of Carg20724 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q29Q81\|SMR6_ARATH	4.5e-04	55.56	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg20724 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFF9\|A0A1S3BFF9_CUCME	2.0e-36	60.99	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0KRI0\|A0A0A0KRI0_CUCSA	3.7e-35	77.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G621910 PE=4 SV=1	[more]
tr\|A0A2I4DNM2\|A0A2I4DNM2_9ROSI	1.9e-15	54.67	cyclin-dependent protein kinase inhibitor SMR1-like OS=Juglans regia OX=51240 GN...	[more]
tr\|A0A2N9EMP5\|A0A2N9EMP5_FAGSY	2.1e-14	58.90	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3706 PE=4 SV=1	[more]
tr\|W9S397\|W9S397_9ROSA	2.3e-13	57.89	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001720 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20724-RA	Carg20724-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..49
None	No IPR available	PANTHER	PTHR33142:SF13	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SIM-RELATED	coord: 36..135
None	No IPR available	PANTHER	PTHR33142	FAMILY NOT NAMED	coord: 36..135

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20724	Cla020520	Watermelon (97103) v1	carwmB0480
Carg20724	Cla013726	Watermelon (97103) v1	carwmB0479
Carg20724	Csa5G621910	Cucumber (Chinese Long) v2	carcuB0515
Carg20724	MELO3C012381	Melon (DHL92) v3.5.1	carmeB0489
Carg20724	MELO3C019852	Melon (DHL92) v3.5.1	carmeB0490
Carg20724	ClCG08G007940	Watermelon (Charleston Gray)	carwcgB0468
Carg20724	ClCG05G021460	Watermelon (Charleston Gray)	carwcgB0467
Carg20724	Cucsa.308840	Cucumber (Gy14) v1	carcgyB0556
Carg20724	CmaCh04G025410	Cucurbita maxima (Rimu)	carcmaB0674
Carg20724	CmaCh04G014020	Cucurbita maxima (Rimu)	carcmaB0673
Carg20724	CmaCh18G009240	Cucurbita maxima (Rimu)	carcmaB0672
Carg20724	CmoCh18G009250	Cucurbita moschata (Rifu)	carcmoB0654
Carg20724	CmoCh04G014760	Cucurbita moschata (Rifu)	carcmoB0655
Carg20724	Lsi04G001190	Bottle gourd (USVL1VR-Ls)	carlsiB437
Carg20724	Cp4.1LG01g24760	Cucurbita pepo (Zucchini)	carcpeB0679
Carg20724	Cp4.1LG01g14440	Cucurbita pepo (Zucchini)	carcpeB0678
Carg20724	Cp4.1LG09g03890	Cucurbita pepo (Zucchini)	carcpeB0677
Carg20724	MELO3C012381.2	Melon (DHL92) v3.6.1	carmedB0495
Carg20724	MELO3C019852.2	Melon (DHL92) v3.6.1	carmedB0496
Carg20724	CsaV3_5G035790	Cucumber (Chinese Long) v3	carcucB0521
Carg20724	Cla97C05G103170	Watermelon (97103) v2	carwmbB0507
Carg20724	Bhi07G000675	Wax gourd	carwgoB0588

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20724	Carg01927	Silver-seed gourd	carcarB472

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20724	Cucumber (Gy14) v2	carcgybB0492
Carg20724	Wild cucumber (PI 183967)	carcpiB0522