Cla013726 (gene) Watermelon (97103) v1

NameCla013726
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 17257884 .. 17258288 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCATGGACCTTGAATTCCCCAAAAATCTCCCCAAAATCCGCCTCCCTTTACAAGTCCGATCCCCTCCCAAACCCTCCCTTTCCGACAACATACCTTCTTCCGCCTCCGCCTCCGCCTCCGATCACGACTCCGACATCGACCGCCGCGCCTGCCGGACACCCACCTCCGCCGAACACAAGATTCCCAAGATCCTCAGCTGTCCTGGCGCTCCCAAGAAGCCTAAACGCCCCCCAGTCCCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTCGAGATCGTCAATCAAGAAGAGGTCGATAATTTCTTCCGATTCTTGAATCTTCTACCACAGCGCCGCCGAAGAGGACCTGCTGCCGGTCAGCCTGATCAATTTCCAGATTGCCGGTTTGAGCCCTAA

mRNA sequence

ATGTCCATGGACCTTGAATTCCCCAAAAATCTCCCCAAAATCCGCCTCCCTTTACAAGTCCGATCCCCTCCCAAACCCTCCCTTTCCGACAACATACCTTCTTCCGCCTCCGCCTCCGCCTCCGATCACGACTCCGACATCGACCGCCGCGCCTGCCGGACACCCACCTCCGCCGAACACAAGATTCCCAAGATCCTCAGCTGTCCTGGCGCTCCCAAGAAGCCTAAACGCCCCCCAGTCCCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTCGAGATCGTCAATCAAGAAGAGGTCGATAATTTCTTCCGATTCTTGAATCTTCTACCACAGCGCCGCCGAAGAGGACCTGCTGCCGGTCAGCCTGATCAATTTCCAGATTGCCGGTTTGAGCCCTAA

Coding sequence (CDS)

ATGTCCATGGACCTTGAATTCCCCAAAAATCTCCCCAAAATCCGCCTCCCTTTACAAGTCCGATCCCCTCCCAAACCCTCCCTTTCCGACAACATACCTTCTTCCGCCTCCGCCTCCGCCTCCGATCACGACTCCGACATCGACCGCCGCGCCTGCCGGACACCCACCTCCGCCGAACACAAGATTCCCAAGATCCTCAGCTGTCCTGGCGCTCCCAAGAAGCCTAAACGCCCCCCAGTCCCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTCGAGATCGTCAATCAAGAAGAGGTCGATAATTTCTTCCGATTCTTGAATCTTCTACCACAGCGCCGCCGAAGAGGACCTGCTGCCGGTCAGCCTGATCAATTTCCAGATTGCCGGTTTGAGCCCTAA

Protein sequence

MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASASASDHDSDIDRRACRTPTSAEHKIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRFLNLLPQRRRRGPAAGQPDQFPDCRFEP
BLAST of Cla013726 vs. Swiss-Prot
Match: SMR1_ARATH (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana GN=SMR1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 43/118 (36.44%), Postives = 54/118 (45.76%), Query Frame = 1

Query: 3   MDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASASASDHDSDIDRRACRTPTSAEHKI 62
           MDLE  ++L K   P  ++   K S              + D D D   C TPTS EHKI
Sbjct: 1   MDLELLQDLSKFNFPTPIKIRSKTS---------KTKKDEGDDDEDDLRCSTPTSQEHKI 60

Query: 63  PKIL-SCPGAPKKPKRPPV-----------PCKRKL---TMELKFFEIVNQEEVDNFF 106
           P ++ S P  P+KP+ PP             CKRKL   T E+    I+N+EE+D FF
Sbjct: 61  PAVVDSPPPPPRKPRPPPSAPSATAALMIRSCKRKLLVSTCEI----IMNREEIDRFF 105

BLAST of Cla013726 vs. Swiss-Prot
Match: SIM_ARATH (Cyclin-dependent protein kinase inhibitor SIM OS=Arabidopsis thaliana GN=SIM PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.1e-07
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = 1

Query: 31  NIPSSASASASDHDSDIDRRACRTPTSAEHKIPKILSC--PGAPKKPKRPPVP------- 90
           N P +    A+ +  D D   C TPTS++HKIP   +   P  P+KP+ P  P       
Sbjct: 13  NFPPAIKIRANTNRDD-DGGGCTTPTSSDHKIPPTTATTPPPPPQKPRPPSTPSSLGIRS 72

Query: 91  CKRKLTMELKFFE-IVNQEEVDNFF 106
           CKRKL   L  +E IVN++E++ FF
Sbjct: 73  CKRKLMTSLSKYEIIVNKDEIERFF 96

BLAST of Cla013726 vs. TrEMBL
Match: A0A0A0LSQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G384460 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.7e-48
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1

Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASASASDHDSDIDRRACRTPTSAEH 60
           MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNI  S     SDHDSD+DRR+CRTPTSAEH
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-----SDHDSDLDRRSCRTPTSAEH 60

Query: 61  KIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR 107
           KIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR
Sbjct: 61  KIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR 101

BLAST of Cla013726 vs. TrEMBL
Match: W9S397_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001720 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.2e-17
Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 1

Query: 1   MSMDLEFPKNLPKIRL-PLQVRSP-PKPSLSDNIPSSASASASDHDSDIDR--------- 60
           MS DLEF + LPKIRL P+Q+++P P  S ++   S      +D  +  D          
Sbjct: 1   MSTDLEFCQALPKIRLSPIQIQTPEPSESKTEAARSIIQRLDNDRRNSCDNIKNEDIIYE 60

Query: 61  ------RACRTPTSAEHKIPKILSCPGAPKKPKRPPVP-CKRKLTMELKFFEIVNQEEVD 107
                   CRTPTSAEH+IP ILSCP AP+KP     P CKRKL+ EL FF++VN+EE+D
Sbjct: 61  EKEEINNECRTPTSAEHRIPAILSCPPAPRKPATARAPSCKRKLS-ELDFFDVVNREEID 120

BLAST of Cla013726 vs. TrEMBL
Match: A0A0D2Q6B6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G144400 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.8e-16
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 1

Query: 1   MSMDLEFPKNLPKIRLP-LQVRSPPKPSLSDNIPSSASASASDHDSDIDRRACRTPTSAE 60
           MS D    ++L + +LP L+++S  +    +  P  +S+S+ +         C TPTS E
Sbjct: 35  MSADHGLLQDLSQTKLPKLKIQSSNQTGNENTNPDDSSSSSKE--------CCVTPTSKE 94

Query: 61  HKIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFF 106
           HKIP +LSCPGAPKKP++  V CKRKL+ + +FF+I+N+EEVD FF
Sbjct: 95  HKIPAVLSCPGAPKKPRKTHVSCKRKLSSKFQFFDIINREEVDAFF 132

BLAST of Cla013726 vs. TrEMBL
Match: M4M6N3_GOSAR (Cyclin-dependent protein kinase inhibitor Siamese OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.8e-16
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 1

Query: 1   MSMDLEFPKNLPKIRLP-LQVRSPPKPSLSDNIPSSASASASDHDSDIDRRACRTPTSAE 60
           MS D    ++L + +LP L+++S  +    +  P  +S+S+ +         C TPTS E
Sbjct: 1   MSADHGLLQDLSQTKLPKLKIQSSNQTGNENTNPDDSSSSSKE--------CCVTPTSKE 60

Query: 61  HKIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFF 106
           HKIP +LSCPGAPKKP++  V CKRKL+ + +FF+I+N+EEVD FF
Sbjct: 61  HKIPAVLSCPGAPKKPRKTHVSCKRKLSSKFQFFDIINREEVDAFF 98

BLAST of Cla013726 vs. TrEMBL
Match: U5G4W0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.8e-16
Identity = 60/122 (49.18%), Postives = 77/122 (63.11%), Query Frame = 1

Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASASASDHDSDIDRRA------CRT 60
           MS DLE  ++LP+I    QVR+    +L        S SA+D    I ++       C+T
Sbjct: 1   MSTDLESRQDLPRI----QVRAVKTETLQ-------SCSATDDKETIIKQENSETDDCQT 60

Query: 61  PTSAEHKIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR-FLNLLPQ 116
           P S EHKIP +LSCP AP+KP+R    CKRKLT EL+FFEIVN+EEVD+FF+    LLP+
Sbjct: 61  PKSEEHKIPAVLSCPPAPRKPRR-SFSCKRKLT-ELEFFEIVNREEVDSFFQSSFELLPK 109

BLAST of Cla013726 vs. NCBI nr
Match: gi|778672724|ref|XP_011649858.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 8.2e-48
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1

Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASASASDHDSDIDRRACRTPTSAEH 60
           MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNI  S     SDHDSD+DRR+CRTPTSAEH
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-----SDHDSDLDRRSCRTPTSAEH 60

Query: 61  KIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR 107
           KIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR
Sbjct: 61  KIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR 101

BLAST of Cla013726 vs. NCBI nr
Match: gi|659113396|ref|XP_008456553.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 8.2e-48
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1

Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASASASDHDSDIDRRACRTPTSAEH 60
           MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNI  S     SDHDSD+DRR+CRTPTSAEH
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-----SDHDSDLDRRSCRTPTSAEH 60

Query: 61  KIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR 107
           KIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR
Sbjct: 61  KIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR 101

BLAST of Cla013726 vs. NCBI nr
Match: gi|703138808|ref|XP_010106827.1| (hypothetical protein L484_001720 [Morus notabilis])

HSP 1 Score: 95.5 bits (236), Expect = 7.5e-17
Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 1

Query: 1   MSMDLEFPKNLPKIRL-PLQVRSP-PKPSLSDNIPSSASASASDHDSDIDR--------- 60
           MS DLEF + LPKIRL P+Q+++P P  S ++   S      +D  +  D          
Sbjct: 1   MSTDLEFCQALPKIRLSPIQIQTPEPSESKTEAARSIIQRLDNDRRNSCDNIKNEDIIYE 60

Query: 61  ------RACRTPTSAEHKIPKILSCPGAPKKPKRPPVP-CKRKLTMELKFFEIVNQEEVD 107
                   CRTPTSAEH+IP ILSCP AP+KP     P CKRKL+ EL FF++VN+EE+D
Sbjct: 61  EKEEINNECRTPTSAEHRIPAILSCPPAPRKPATARAPSCKRKLS-ELDFFDVVNREEID 120

BLAST of Cla013726 vs. NCBI nr
Match: gi|1009119912|ref|XP_015876638.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-16
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 1

Query: 1   MSMDLEFPKNLPKIRLP-LQVRSPPKPSLSDN----IPSSASASASDHDSDIDRRACRTP 60
           MS DLE  + LPK+ L  ++VR+      +D     IP        D   D D+   RTP
Sbjct: 1   MSTDLELCQELPKVSLQSIRVRTQKGSESADTNGSVIPKQDFKGQGDDGQDSDQ-CPRTP 60

Query: 61  TSAEHKIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFR 107
           TS EH+IP++L+CP AP+KPK   V CKRKLT ELKFFEIV ++EVD+FFR
Sbjct: 61  TSKEHRIPELLTCPPAPRKPKTRAVQCKRKLT-ELKFFEIVKRDEVDSFFR 109

BLAST of Cla013726 vs. NCBI nr
Match: gi|459354680|gb|AGG55716.1| (cyclin-dependent protein kinase inhibitor Siamese [Gossypium arboreum])

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 1

Query: 1   MSMDLEFPKNLPKIRLP-LQVRSPPKPSLSDNIPSSASASASDHDSDIDRRACRTPTSAE 60
           MS D    ++L + +LP L+++S  +    +  P  +S+S+ +         C TPTS E
Sbjct: 1   MSADHGLLQDLSQTKLPKLKIQSSNQTGNENTNPDDSSSSSKE--------CCVTPTSKE 60

Query: 61  HKIPKILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFF 106
           HKIP +LSCPGAPKKP++  V CKRKL+ + +FF+I+N+EEVD FF
Sbjct: 61  HKIPAVLSCPGAPKKPRKTHVSCKRKLSSKFQFFDIINREEVDAFF 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SMR1_ARATH1.7e-0836.44Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana GN=SMR1 P... [more]
SIM_ARATH9.1e-0738.82Cyclin-dependent protein kinase inhibitor SIM OS=Arabidopsis thaliana GN=SIM PE=... [more]
Match NameE-valueIdentityDescription
A0A0A0LSQ6_CUCSA5.7e-4891.51Uncharacterized protein OS=Cucumis sativus GN=Csa_2G384460 PE=4 SV=1[more]
W9S397_9ROSA5.2e-1746.77Uncharacterized protein OS=Morus notabilis GN=L484_001720 PE=4 SV=1[more]
A0A0D2Q6B6_GOSRA9.8e-1644.34Uncharacterized protein OS=Gossypium raimondii GN=B456_002G144400 PE=4 SV=1[more]
M4M6N3_GOSAR9.8e-1644.34Cyclin-dependent protein kinase inhibitor Siamese OS=Gossypium arboreum PE=2 SV=... [more]
U5G4W0_POPTR9.8e-1649.18Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778672724|ref|XP_011649858.1|8.2e-4891.51PREDICTED: cyclin-dependent protein kinase inhibitor SMR1 [Cucumis sativus][more]
gi|659113396|ref|XP_008456553.1|8.2e-4891.51PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo][more]
gi|703138808|ref|XP_010106827.1|7.5e-1746.77hypothetical protein L484_001720 [Morus notabilis][more]
gi|1009119912|ref|XP_015876638.1|2.8e-1649.55PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like isoform X1 [Zizip... [more]
gi|459354680|gb|AGG55716.1|1.4e-1544.34cyclin-dependent protein kinase inhibitor Siamese [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016310 phosphorylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016301 kinase activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU06765watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU31480watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU43070watermelon EST collection version 2.0transcribed_cluster
WMU73682watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013726Cla013726.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU06765WMU06765transcribed_cluster
WMU43070WMU43070transcribed_cluster
WMU31480WMU31480transcribed_cluster
WMU73682WMU73682transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33142FAMILY NOT NAMEDcoord: 1..106
score: 4.1
NoneNo IPR availablePANTHERPTHR33142:SF1CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SIM-RELATEDcoord: 1..106
score: 4.1

The following gene(s) are paralogous to this gene:

None