CmoCh04G026600 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCATGGACCTTGAATTTCCTGAAAATCTCCCTAAAATCCGCCTTCCTTTACAGGTTCGATCGCCTCCCAAGCCTTCCAATTCCATCAACATCCCTTCCTCCGTCTCCGATCACGACGGCGCCGACCTTGACCACCGCGGCTGCCGGACGCCGACCTCTGCTGAGCACAAGATTCCGAAGATCATCAGCTGTCCTGGAGCGCCGAGGAAGCCGAAGCGTCCTCCCGTACCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTTGAGTTCGTGAATCAAGAAGAAGTCGATAATTTCTTCCGATCCGCTTACGATCTCGAAGCTTCTTCCACGGCGCCGTCGAAGAGGAGCTGCTGCCGGTCAGCCTGA ATGTCCATGGACCTTGAATTTCCTGAAAATCTCCCTAAAATCCGCCTTCCTTTACAGGTTCGATCGCCTCCCAAGCCTTCCAATTCCATCAACATCCCTTCCTCCGTCTCCGATCACGACGGCGCCGACCTTGACCACCGCGGCTGCCGGACGCCGACCTCTGCTGAGCACAAGATTCCGAAGATCATCAGCTGTCCTGGAGCGCCGAGGAAGCCGAAGCGTCCTCCCGTACCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTTGAGTTCGTGAATCAAGAAGAAGTCGATAATTTCTTCCGATCCGCTTACGATCTCGAAGCTTCTTCCACGGCGCCGTCGAAGAGGAGCTGCTGCCGGTCAGCCTGA ATGTCCATGGACCTTGAATTTCCTGAAAATCTCCCTAAAATCCGCCTTCCTTTACAGGTTCGATCGCCTCCCAAGCCTTCCAATTCCATCAACATCCCTTCCTCCGTCTCCGATCACGACGGCGCCGACCTTGACCACCGCGGCTGCCGGACGCCGACCTCTGCTGAGCACAAGATTCCGAAGATCATCAGCTGTCCTGGAGCGCCGAGGAAGCCGAAGCGTCCTCCCGTACCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTTGAGTTCGTGAATCAAGAAGAAGTCGATAATTTCTTCCGATCCGCTTACGATCTCGAAGCTTCTTCCACGGCGCCGTCGAAGAGGAGCTGCTGCCGGTCAGCCTGA
BLAST of CmoCh04G026600 vs. Swiss-Prot
Match: SMR1_ARATH (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana GN=SMR1 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.7e-10 Identity = 51/132 (38.64%), Postives = 66/132 (50.00%), Query Frame = 1
BLAST of CmoCh04G026600 vs. Swiss-Prot
Match: SIM_ARATH (Cyclin-dependent protein kinase inhibitor SIM OS=Arabidopsis thaliana GN=SIM PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 7.6e-08 Identity = 47/140 (33.57%), Postives = 66/140 (47.14%), Query Frame = 1
BLAST of CmoCh04G026600 vs. TrEMBL
Match: A0A0A0LSQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G384460 PE=4 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 6.6e-51 Identity = 106/122 (86.89%), Postives = 111/122 (90.98%), Query Frame = 1
BLAST of CmoCh04G026600 vs. TrEMBL
Match: W9S397_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001720 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 5.7e-18 Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1
BLAST of CmoCh04G026600 vs. TrEMBL
Match: M5X1M1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013617mg PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 7.7e-15 Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 1
BLAST of CmoCh04G026600 vs. TrEMBL
Match: U5G4W0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14 Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 1
BLAST of CmoCh04G026600 vs. TrEMBL
Match: A0A067L9G3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01562 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 2.9e-14 Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 1
BLAST of CmoCh04G026600 vs. TAIR10
Match: AT3G10525.1 (AT3G10525.1 LOSS OF GIANT CELLS FROM ORGANS) HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11 Identity = 51/132 (38.64%), Postives = 66/132 (50.00%), Query Frame = 1
BLAST of CmoCh04G026600 vs. TAIR10
Match: AT5G04470.1 (AT5G04470.1 cyclin-dependent protein kinase inhibitors) HSP 1 Score: 58.2 bits (139), Expect = 4.3e-09 Identity = 47/140 (33.57%), Postives = 66/140 (47.14%), Query Frame = 1
BLAST of CmoCh04G026600 vs. TAIR10
Match: AT5G02420.1 (AT5G02420.1 unknown protein) HSP 1 Score: 48.9 bits (115), Expect = 2.6e-06 Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 1
BLAST of CmoCh04G026600 vs. NCBI nr
Match: gi|659113396|ref|XP_008456553.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo]) HSP 1 Score: 208.8 bits (530), Expect = 5.6e-51 Identity = 106/122 (86.89%), Postives = 112/122 (91.80%), Query Frame = 1
BLAST of CmoCh04G026600 vs. NCBI nr
Match: gi|778672724|ref|XP_011649858.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1 [Cucumis sativus]) HSP 1 Score: 208.0 bits (528), Expect = 9.5e-51 Identity = 106/122 (86.89%), Postives = 111/122 (90.98%), Query Frame = 1
BLAST of CmoCh04G026600 vs. NCBI nr
Match: gi|1009119912|ref|XP_015876638.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like isoform X1 [Ziziphus jujuba]) HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18 Identity = 64/131 (48.85%), Postives = 85/131 (64.89%), Query Frame = 1
BLAST of CmoCh04G026600 vs. NCBI nr
Match: gi|703138808|ref|XP_010106827.1| (hypothetical protein L484_001720 [Morus notabilis]) HSP 1 Score: 98.6 bits (244), Expect = 8.1e-18 Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1
BLAST of CmoCh04G026600 vs. NCBI nr
Match: gi|645252301|ref|XP_008232059.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR3 [Prunus mume]) HSP 1 Score: 89.7 bits (221), Expect = 3.8e-15 Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |