CmoCh04G014760.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAATTGATAACATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCCGCTAAAATAAGCTTCTGCGAGTGTAAATGA ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAATTGATAACATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCCGCTAAAATAAGCTTCTGCGAGTGTAAATGA ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAATTGATAACATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCCGCTAAAATAAGCTTCTGCGAGTGTAAATGA
BLAST of CmoCh04G014760.1 vs. Swiss-Prot
Match: SMR1_ARATH (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana GN=SMR1 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07 Identity = 31/92 (33.70%), Postives = 50/92 (54.35%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. TrEMBL
Match: A0A0A0KRI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621910 PE=4 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 6.3e-52 Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. TrEMBL
Match: B9HUW5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23800g PE=4 SV=2) HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16 Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. TrEMBL
Match: W9S397_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001720 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 4.7e-15 Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. TrEMBL
Match: U5G4W0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14 Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. TrEMBL
Match: A5BYH3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043216 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 4.4e-13 Identity = 53/130 (40.77%), Postives = 71/130 (54.62%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. TAIR10
Match: AT3G10525.1 (AT3G10525.1 LOSS OF GIANT CELLS FROM ORGANS) HSP 1 Score: 56.6 bits (135), Expect = 1.3e-08 Identity = 31/92 (33.70%), Postives = 50/92 (54.35%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. TAIR10
Match: AT5G40460.1 (AT5G40460.1 unknown protein) HSP 1 Score: 48.5 bits (114), Expect = 3.6e-06 Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. NCBI nr
Match: gi|778706436|ref|XP_011655851.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis sativus]) HSP 1 Score: 211.5 bits (537), Expect = 9.0e-52 Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. NCBI nr
Match: gi|659091912|ref|XP_008446800.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo]) HSP 1 Score: 209.5 bits (532), Expect = 3.4e-51 Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. NCBI nr
Match: gi|566192441|ref|XP_002316411.2| (hypothetical protein POPTR_0010s23800g [Populus trichocarpa]) HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16 Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. NCBI nr
Match: gi|1009119912|ref|XP_015876638.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like isoform X1 [Ziziphus jujuba]) HSP 1 Score: 92.4 bits (228), Expect = 6.1e-16 Identity = 57/133 (42.86%), Postives = 79/133 (59.40%), Query Frame = 1
BLAST of CmoCh04G014760.1 vs. NCBI nr
Match: gi|703138808|ref|XP_010106827.1| (hypothetical protein L484_001720 [Morus notabilis]) HSP 1 Score: 89.0 bits (219), Expect = 6.8e-15 Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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