Cucsat.G6901 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GTAAAAATTGGAGGTTGTTATTGCAATTCTCCATACTGGTTGTTTAAATTTATTTAAAAATAAATAAAAATGAAAAACAAAAGAAAAACCCAATTTTCCCGGTAAGAAAACAGACAGCCGATTAGTGAAAACCCAGAAACGAAACTATCGAAGACGGGAGAATGATTTCCGTTTGCTCCGCTAGAACAATTCAAGCTTCACCTTCTCCTATTCACTTCTTTTTCCCTCCAAATCGTAGAAGAATCGGTTCGAATGTTCTTCGAATTTCCTCCAATTTCTCCACTAGATGCTCCTCCGATTACGATGAATATAGTGAAGCTCAATCCGAACGGATAGCCAATTACGCCGGAACCAGACTGGAAGAGACCGTGGACGTCAATCCCGGTAAAGTTCGTCTCGATTCTTGGATTTCTTGCCGCATTAACGGCATCAGTAGGGCTCGAGTTCAGTCCAGTATTAGAGCGGGATTAGTTTCAGTTAATGGCCGAGTTATCGATAAGGTAGCGTCATTTTCCATAGAGAAGCTACATTTGCTAACCTTTTTTTTTTTCTTTCTATTTAGCTTCTTTCAGCTATTTTAGTATGATTATCTAGTGGTCTGTAATCGGAGTGGTGAATTATGTTCAGCCTATATTTACTGTTTTTGTTCCATATTTGAGTTCTTAATTTGTGTGTTCATTTGCAACTTCTATATATTTTTTAAATACTCAAGCAGGTTTCTCACAATGTAAAAGCTGGGGATGTGATCAATTGTACCATATCCGAGTTGCAACCATTGAGAGCTGAACCTGAAGATATTGATTTGGATATAGTTTATGAAGATGAACATGTTTTAGTCGTAAACAAACCTGCTCACATGGTAATGATTCAAAAAAGTTTAATATTGTTATTATCAATACTATTTGAAGTTATTTGTGGATGCAAGATATCGATACTTGTGGATAAAATTAAACGCTCTCCCCTCCCACGCCTGAAGTTTTTAGTAAGATTGAAATTTGCACGTATCTGTGTTAGCGGTTTTCTTCATGATTCAGGTTGTTCATCCAGCACCTGGAAATGCGACAGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCGATGGTTGCAACATCAACTGGGGAAAATGAGTCGGATTCAGATGTTTCCGATGATGAGTTCAGTTCAATTGGAGTTTTTTCTAGAGTTTCTGAGGCGCCTATTCGTCCTGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGATTGCTTGTTGTTGCCAAGGTGATTTGCTCTCCCTTTTTAAGCTTCCTTGTTACTGCTCATCTGAAGATTAAAGCAGACAATTCAAGTTTGGTGCTTCAAAAGTTTGCTACTCAAACACTTGTAATATCATGTTTAACTTCTAAGTTTTTTTCATTGGAACTACAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTTAAGCAACATTCTATTGAGAGAGTTTATATTAGTCTCACATGTGGAGTTCCACCTTCAACTGCTGGGCGTATTGAGATGCCAATTTGCCGTGATCCAAACAATCGTATCCGCATGACTGCAATAGATGGAACAAAAAACAATCCACATGCAAAGTACGCTGCTAGTAGGTAATTAGTTTTTCTGCATCTTTTATTTTATTTATGTACATAATTATTTTTCAGTGATAGAAAATATTTAAATATCACTGATTTTGGGCGTTCCTAACGCAAAGTTGAAACACCGAATGTTTCGCAGATACAATGTTATGGAAATTTTAGCCCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACACATCAGGTGCGTAGTCTAAATGTCTTTCTCCTTAGGCTGTTTCAAATGACCAAAAAAAAAATTATATTACAATCTATCAATAGTCAGTTTAGAACATAAATTATATTCCCTAACACCACGCATATGTGCAAAGACATACATTTCTTTTGTTTGTAAAAGATTTCTCTATGATACTGCTACTGTTTTCCAGTCTTCATATGTGCATATGTAAAATAAAATTTCAATATAACGAGTCAGAGTTGCACCTCGAGCATACAAGCAGCCACATTTACCATTCCACATCCACTGCAATTTCAGTTCTTATCTTTTTTTAAAAAAAATTGAAATGCAGTTTTATTTTACTCGGTCTTAGGATTGAATATTTGTGAAGTAGATACGTGCACACGCGAAGTATATGGGAATACCATTACTTGGAGACGAGGTCTATGGAGGTACCAAGAGCATGGCCATGTCGCTGCTTCGAACTAGAGCATCATCTAATTGTCACGGCCAGCTCATGCAGCTTGTTTCTTCATTAGAGAGGCCCTGTCTTCATGCTCTGACTCTTGGGTTAGAAAACAAATCTTTAAGAGCTCATTTAGTCCGTTCTTATTTCATTTACTATCCATTTTTTGAGAAATATGTGATTTTGACCTTTCTTCTTTATTTTATTTTATTTATTCTTTTCTAAAATAGTTTATAACTTTCATCTCTTATTTCTAATGTTTTGAAACTAAATGGAATTTATATTTGTATTATTTTCCTCTAATAATAATTGTATGCAAAATATCAAAACATTAATTTGACTATTCAATTCCAATTTTTCGTTTAAATTTCCACTTTTTGAAAAAGAAACGTTGTAGAGAAAAATAAATGATAACAACTGCTAACCACATTTTTGTTCTTTTTTAATAAAAATGGAGAAAAGCAAGAAATGGTATAGAAACATGTTTTCACTTTTTACAATAAAAGAGACTAATGAATCTTTACTTGTTCATTCCTTCCGTAAACAACTAATTCAAGATCACTGAATATTTTGTAGGTTTGTACATCCTCACACAGGGAAGAACATACGTTTTTCATGCCCACCCCCAACAGATTTTACTGAAATTTTGAGTCAGCTTCGCGAAATTGGCACACAAAAGGTATCCCTTATTTTGATTTCTTTCATTTTATAAGTTGAGCCAAGCTTTTTGCTTGGTAATCGGTTATTTTACAGATTTAATATCCATCCATCATCATGAAGAACAATATAAAAAATGTCCCGAGGGATACAATTGACACAACCAACCTCATTCGTAGCAACCTAGGTAGTTAATACGTGTCACCTTTATGCCTATTTTCTGGGCGCCCCCTTGCCATGTTATAGCTAATACCGGGTCTTCTCTATTTACTAGCTATTTTTCACCTGGTTCTTGTGTTTGGAGTGACTATTTGTTGGTTTAGTTTCCTTTTGTACTTCATCGCTAACTTATTCTACTAAACTTAACACAAAAATAAGTTGTTTAATGATGGGTGAAAATTTAGCAATACATAAAATATATTTTCTTATTATTTAAACGATGGTTTTATACATGAAAACATTGGAGACATGATAGATATAACATAATAACTAAATAGCAGACAAACAAGCATAGAAGCTCTCCTTTTACTTGCTTCTCTTATAAATAGTAACGAATAGGGACGTTTGTTCTATCTATACAAATGACATAATGGGGATAAATTCCCTGAACAATTTTGAACTCTATATCATGTGGAAATTTCGCATCATATCTTGTGGATTAATCTTATGCCGGTCTGATGGTAGATAGGGCAAATTTGAAATAATTTTGAGCTTCACAAAATATATTAGATGTTGAACAATGGTTACTACCATAGAATCTAGGTGAGATGTGGTTTTTACGGTGCCCCAGTTAACCTATAATAGAGTGTTGTCATAAAAGTGGCAGGTTACCAAATCTTAGCTGGGAGCCTCCAGTATCTGGCAAGTAGACTCGTCAAATGACTCGAAAATGAGATATCAAGAAGGTACATTAGGACATACAGCCATTTAAGTTGTGATGTCTGAAGCACAAATTTAAGTTCTGGGTAACTTACATATCTTGTTTATTAGATTCATTTAATTGTTGAAATTTAAAGTATTTTGTCACACATTCCCAGACGTTGAATTCCACGTATTGTTAATCTCTGCCATTAACTTCGATTATTGAAACCATTTAGAATCAATATTGTATATACGGGTAGTTACTAGGTAGTTAACTATGTACACTTAATTCTAATACATTTCTTAAAATTTAGACGAAGAGACATAGTTGAATTTTTCTTCTTGCCACCGCTCCTTTTATTTCATTTCCAACTTCAGCGACCTTTCCCCTTCTTTTCGCTTCAATTCATAATAAGAATATGTTGATGTTTGGGTTGGTGTGTTTTGCTCTGTGACTTTCCTTTGAAAATTCAACTCTCTAAATTTGCTTACAATAATATACACAGGAAATGCTCCGATTGCCCAATAACTCGATATTGAAATTGAGATGGAGCAGCATGCAACAATAGCATAAGGTCAGGAGGGGTGTTTCTTCTATCCAAACCATCATGTAAGGTATCTAGTTAGGGATATTAGTAATAGTATGGTATTTGTAAGGGTTAGTTAGAAGTTTGCGTAGTTGGTTATAAATAGAGGGAGGGGTGCATACTTTCCCTCAATTCCCCTATTCTCCTCCTATTTGTAACCAACTATATGCTAATTTCCTAGCTAACTACACTTATGCCCTTACTAATACAATACTAATACCCGGACCTTAAGTCTACCTTATCGTTAGTTGCTTGTGTGAAACATATGCCTACTCCCCATGTGCAATGGAGCCTCATATTCAACTTAATATTGATGGTAAGCCACCATTGCAATTAAACATTCGATTGCAGTAGAAACTCCCTTGAGTGAGTTCAAGTTGGGAGTTTGGGACATTACAAGTTTATGATGGTGAAGAAGTCTGACAAGCTCTTCTTTTTCGAAAAGCCATTGATAGGATTATGAATTTGATTGATTGATTGGATTAAAATGGATTGAATTTGAATTTGATTGATTTTTTTAGATTCATTTTTACTAAATGGATTGACTGGATTATGTGAGAGTTTGACTGAAACTGTGTTGATTGAAATAATGTAATTATGAAATTTGTTGGATGATGTTTCCATGTTATGTTCATGTTAGGTTTTAACTATTAGGCTAGTGTACCATGCATCTACGGCGT ATGATTTCCGTTTGCTCCGCTAGAACAATTCAAGCTTCACCTTCTCCTATTCACTTCTTTTTCCCTCCAAATCGTAGAAGAATCGGTTCGAATGTTCTTCGAATTTCCTCCAATTTCTCCACTAGATGCTCCTCCGATTACGATGAATATAGTGAAGCTCAATCCGAACGGATAGCCAATTACGCCGGAACCAGACTGGAAGAGACCGTGGACGTCAATCCCGGTAAAGTTCGTCTCGATTCTTGGATTTCTTGCCGCATTAACGGCATCAGTAGGGCTCGAGTTCAGTCCAGTATTAGAGCGGGATTAGTTTCAGTTAATGGCCGAGTTATCGATAAGGTTTCTCACAATGTAAAAGCTGGGGATGTGATCAATTGTACCATATCCGAGTTGCAACCATTGAGAGCTGAACCTGAAGATATTGATTTGGATATAGTTTATGAAGATGAACATGTTTTAGTCGTAAACAAACCTGCTCACATGGTTGTTCATCCAGCACCTGGAAATGCGACAGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCGATGGTTGCAACATCAACTGGGGAAAATGAGTCGGATTCAGATGTTTCCGATGATGAGTTCAGTTCAATTGGAGTTTTTTCTAGAGTTTCTGAGGCGCCTATTCGTCCTGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGATTGCTTGTTGTTGCCAAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTTAAGCAACATTCTATTGAGAGAGTTTATATTAGTCTCACATGTGGAGTTCCACCTTCAACTGCTGGGCGTATTGAGATGCCAATTTGCCGTGATCCAAACAATCGTATCCGCATGACTGCAATAGATGGAACAAAAAACAATCCACATGCAAAGTACGCTGCTAGTAGATACAATGTTATGGAAATTTTAGCCCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACACATCAGATACGTGCACACGCGAAGTATATGGGAATACCATTACTTGGAGACGAGGTCTATGGAGGTACCAAGAGCATGGCCATGTCGCTGCTTCGAACTAGAGCATCATCTAATTGTCACGGCCAGCTCATGCAGCTTGTTTCTTCATTAGAGAGGCCCTGTCTTCATGCTCTGACTCTTGGGTTTGTACATCCTCACACAGGGAAGAACATACGTTTTTCATGCCCACCCCCAACAGATTTTACTGAAATTTTGAGTCAGCTTCGCGAAATTGGCACACAAAAGGTATCCCTTATTTTGATTTCTTTCATTTTATAA MISVCSARTIQASPSPIHFFFPPNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSERIANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREIGTQKVSLILISFIL Homology
BLAST of Cucsat.G6901 vs. ExPASy Swiss-Prot
Match: Q5Z8P2 (RNA pseudouridine synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0717400 PE=2 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 5.6e-94 Identity = 174/271 (64.21%), Postives = 209/271 (77.12%), Query Frame = 0
BLAST of Cucsat.G6901 vs. ExPASy Swiss-Prot
Match: Q3ECD0 (RNA pseudouridine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g76050 PE=2 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 1.2e-93 Identity = 172/265 (64.91%), Postives = 203/265 (76.60%), Query Frame = 0
BLAST of Cucsat.G6901 vs. ExPASy Swiss-Prot
Match: P50513 (Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rluD PE=3 SV=2) HSP 1 Score: 159.1 bits (401), Expect = 7.4e-38 Identity = 101/258 (39.15%), Postives = 133/258 (51.55%), Query Frame = 0
BLAST of Cucsat.G6901 vs. ExPASy Swiss-Prot
Match: Q45480 (Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) OX=224308 GN=ylyB PE=3 SV=3) HSP 1 Score: 154.8 bits (390), Expect = 1.4e-36 Identity = 98/262 (37.40%), Postives = 132/262 (50.38%), Query Frame = 0
BLAST of Cucsat.G6901 vs. ExPASy Swiss-Prot
Match: O50310 (Uncharacterized RNA pseudouridine synthase Cpar_0723 OS=Chlorobaculum parvum (strain DSM 263 / NCIMB 8327) OX=517417 GN=Cpar_0723 PE=3 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 2.4e-36 Identity = 101/267 (37.83%), Postives = 136/267 (50.94%), Query Frame = 0
BLAST of Cucsat.G6901 vs. NCBI nr
Match: KGN62268.1 (hypothetical protein Csa_018737 [Cucumis sativus]) HSP 1 Score: 536 bits (1381), Expect = 2.13e-189 Identity = 265/266 (99.62%), Postives = 265/266 (99.62%), Query Frame = 0
BLAST of Cucsat.G6901 vs. NCBI nr
Match: XP_031736623.1 (RNA pseudouridine synthase 2, chloroplastic [Cucumis sativus]) HSP 1 Score: 536 bits (1381), Expect = 3.49e-189 Identity = 265/266 (99.62%), Postives = 265/266 (99.62%), Query Frame = 0
BLAST of Cucsat.G6901 vs. NCBI nr
Match: XP_008445320.1 (PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 519 bits (1337), Expect = 9.47e-183 Identity = 256/268 (95.52%), Postives = 263/268 (98.13%), Query Frame = 0
BLAST of Cucsat.G6901 vs. NCBI nr
Match: XP_008445318.1 (PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Cucumis melo] >XP_008445319.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 518 bits (1333), Expect = 4.13e-182 Identity = 255/267 (95.51%), Postives = 262/267 (98.13%), Query Frame = 0
BLAST of Cucsat.G6901 vs. NCBI nr
Match: XP_038886062.1 (RNA pseudouridine synthase 2, chloroplastic isoform X4 [Benincasa hispida]) HSP 1 Score: 503 bits (1295), Expect = 3.92e-176 Identity = 248/276 (89.86%), Postives = 261/276 (94.57%), Query Frame = 0
BLAST of Cucsat.G6901 vs. ExPASy TrEMBL
Match: A0A0A0LKD7 (Pseudouridine synthase OS=Cucumis sativus OX=3659 GN=Csa_2G346580 PE=3 SV=1) HSP 1 Score: 536 bits (1381), Expect = 1.03e-189 Identity = 265/266 (99.62%), Postives = 265/266 (99.62%), Query Frame = 0
BLAST of Cucsat.G6901 vs. ExPASy TrEMBL
Match: A0A1S3BD56 (Pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488386 PE=3 SV=1) HSP 1 Score: 519 bits (1337), Expect = 4.59e-183 Identity = 256/268 (95.52%), Postives = 263/268 (98.13%), Query Frame = 0
BLAST of Cucsat.G6901 vs. ExPASy TrEMBL
Match: A0A1S3BCE4 (Pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488386 PE=3 SV=1) HSP 1 Score: 518 bits (1333), Expect = 2.00e-182 Identity = 255/267 (95.51%), Postives = 262/267 (98.13%), Query Frame = 0
BLAST of Cucsat.G6901 vs. ExPASy TrEMBL
Match: A0A6J1CM88 (RNA pseudouridine synthase 2, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012905 PE=3 SV=1) HSP 1 Score: 469 bits (1207), Expect = 4.88e-164 Identity = 234/269 (86.99%), Postives = 250/269 (92.94%), Query Frame = 0
BLAST of Cucsat.G6901 vs. ExPASy TrEMBL
Match: A0A6J1CMS3 (Pseudouridine synthase OS=Momordica charantia OX=3673 GN=LOC111012905 PE=3 SV=1) HSP 1 Score: 469 bits (1206), Expect = 3.70e-163 Identity = 234/269 (86.99%), Postives = 249/269 (92.57%), Query Frame = 0
BLAST of Cucsat.G6901 vs. TAIR 10
Match: AT1G76050.2 (Pseudouridine synthase family protein ) HSP 1 Score: 344.4 bits (882), Expect = 8.8e-95 Identity = 172/265 (64.91%), Postives = 203/265 (76.60%), Query Frame = 0
BLAST of Cucsat.G6901 vs. TAIR 10
Match: AT1G76050.1 (Pseudouridine synthase family protein ) HSP 1 Score: 178.7 bits (452), Expect = 6.4e-45 Identity = 96/149 (64.43%), Postives = 108/149 (72.48%), Query Frame = 0
BLAST of Cucsat.G6901 vs. TAIR 10
Match: AT3G52260.2 (Pseudouridine synthase family protein ) HSP 1 Score: 67.4 bits (163), Expect = 2.1e-11 Identity = 50/155 (32.26%), Postives = 74/155 (47.74%), Query Frame = 0
BLAST of Cucsat.G6901 vs. TAIR 10
Match: AT1G56345.1 (Pseudouridine synthase family protein ) HSP 1 Score: 66.2 bits (160), Expect = 4.6e-11 Identity = 59/222 (26.58%), Postives = 85/222 (38.29%), Query Frame = 0
BLAST of Cucsat.G6901 vs. TAIR 10
Match: AT3G52260.3 (Pseudouridine synthase family protein ) HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09 Identity = 48/161 (29.81%), Postives = 76/161 (47.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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