Cp4.1LG12g02460 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g02460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 1674863 .. 1675267 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAAATGAAAAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGACTCCGAGGTGGATAGATTATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCAGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCAGAGCGCCGTTGATTTCCGAGATGATGGGGATGGAGATGAAGATCGAGCCGTTGGTTCGACCGGTGACGACACTCAATCAAGCCATCTCAATGAAACACGACCACGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTACGATCCAAGATATGAATGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

mRNA sequence

ATGGACCAAATGAAAAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGACTCCGAGGTGGATAGATTATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCAGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCAGAGCGCCGTTGATTTCCGAGATGATGGGGATGGAGATGAAGATCGAGCCGTTGGTTCGACCGGTGACGACACTCAATCAAGCCATCTCAATGAAACACGACCACGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTACGATCCAAGATATGAATGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

Coding sequence (CDS)

ATGGACCAAATGAAAAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGACTCCGAGGTGGATAGATTATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCAGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCAGAGCGCCGTTGATTTCCGAGATGATGGGGATGGAGATGAAGATCGAGCCGTTGGTTCGACCGGTGACGACACTCAATCAAGCCATCTCAATGAAACACGACCACGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTACGATCCAAGATATGAATGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

Protein sequence

MDQMKNASSLFLWEDTADSEVDRLLSHPHQLESAVDDQEDARSCSCDDYATDQSAVDFRDDGDGDEDRAVGSTGDDTQSSHLNETRPRGATLEYSSEEDEEEEEESNNNVGTIQDMNEMEDKLFWDTCMEGGYP
Homology
[Close]
BLAST of Cp4.1LG12g02460 vs. TrEMBL
Match: A0A0A0KBF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 86/141 (60.99%), Postives = 102/141 (72.34%), Query Frame = 1 

Query: 1   MDQMKNASSLFLWEDTADSEVDRLLSH-PHQLESAV---DDQEDARSCSCDDYATDQSAV 60
           MDQ+K+ASS FLWED+ADSEVD+LLSH PHQLESAV   DDQEDA SCSC++   D S  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNN--NDFSID 60

Query: 61  DFRD--DGD-GDEDRAVGSTGDDTQSSHLNETRPRGATLEYSSEEDEEEEEESNNNVGTI 120
           DF+D  DGD GD D+ +G  GD  +         R +   Y  EE+EEEEE SNN+VG I
Sbjct: 61  DFQDAYDGDNGDGDQDIGLIGDGGR---------RRSGAGYEEEEEEEEEESSNNDVGAI 120

Query: 121 QDMNEMEDKLFWDTCMEGGYP 135
           ++MNEMEDK+FWDTCM GGYP
Sbjct: 121 RNMNEMEDKVFWDTCMAGGYP 130

[Close]
BLAST of Cp4.1LG12g02460 vs. NCBI nr
Match: gi|700190980|gb|KGN46184.1| (hypothetical protein Csa_6G067420 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-29
Identity = 86/141 (60.99%), Postives = 102/141 (72.34%), Query Frame = 1 

Query: 1   MDQMKNASSLFLWEDTADSEVDRLLSH-PHQLESAV---DDQEDARSCSCDDYATDQSAV 60
           MDQ+K+ASS FLWED+ADSEVD+LLSH PHQLESAV   DDQEDA SCSC++   D S  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNN--NDFSID 60

Query: 61  DFRD--DGD-GDEDRAVGSTGDDTQSSHLNETRPRGATLEYSSEEDEEEEEESNNNVGTI 120
           DF+D  DGD GD D+ +G  GD  +         R +   Y  EE+EEEEE SNN+VG I
Sbjct: 61  DFQDAYDGDNGDGDQDIGLIGDGGR---------RRSGAGYEEEEEEEEEESSNNDVGAI 120

Query: 121 QDMNEMEDKLFWDTCMEGGYP 135
           ++MNEMEDK+FWDTCM GGYP
Sbjct: 121 RNMNEMEDKVFWDTCMAGGYP 130

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g02460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g02460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBF3_CUCSA2.0e-2960.99Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1[more]
BLAST of Cp4.1LG12g02460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g02460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190980|gb|KGN46184.1|2.9e-2960.99hypothetical protein Csa_6G067420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g02460.1Cp4.1LG12g02460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g02460CmaCh17G002990Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g02460CmoCh17G002870Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g02460Cla009342Watermelon (97103) v1cpewmB161
Cp4.1LG12g02460Csa6G067420Cucumber (Chinese Long) v2cpecuB144
Cp4.1LG12g02460MELO3C021372Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g02460ClCG06G005490Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g02460CSPI06G05320Wild cucumber (PI 183967)cpecpiB146
Cp4.1LG12g02460Lsi09G013870Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g02460MELO3C021372.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g02460CsaV3_6G005640Cucumber (Chinese Long) v3cpecucB0168
Cp4.1LG12g02460Bhi12G001565Wax gourdcpewgoB0180
Cp4.1LG12g02460CsGy6G005280Cucumber (Gy14) v2cgybcpeB724
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g02460Cucurbita pepo (Zucchini)cpecpeB169
Cp4.1LG12g02460Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g02460Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g02460Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g02460Cucumber (Gy14) v1cgycpeB0948
Cp4.1LG12g02460Cucurbita maxima (Rimu)cmacpeB262
Cp4.1LG12g02460Cucurbita maxima (Rimu)cmacpeB810
Cp4.1LG12g02460Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g02460Cucurbita moschata (Rifu)cmocpeB225
Cp4.1LG12g02460Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g02460Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g02460Wild cucumber (PI 183967)cpecpiB155
Cp4.1LG12g02460Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g02460Cucumber (Chinese Long) v2cpecuB153
Cp4.1LG12g02460Bottle gourd (USVL1VR-Ls)cpelsiB118
Cp4.1LG12g02460Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g02460Watermelon (97103) v1cpewmB152
Cp4.1LG12g02460Melon (DHL92) v3.5.1cpemeB140
Cp4.1LG12g02460Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g02460Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g02460Silver-seed gourdcarcpeB0099
Cp4.1LG12g02460Silver-seed gourdcarcpeB0450
Cp4.1LG12g02460Silver-seed gourdcarcpeB0857
Cp4.1LG12g02460Silver-seed gourdcarcpeB1163
Cp4.1LG12g02460Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g02460Wax gourdcpewgoB0188