Lsi09G013870 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G013870
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 21894879 .. 21895277 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAAATCAAAGATGCTTCTTCTTTCTTTCTATGGGAAGATAGTGCAGATTCTGAGGTGGATAGATTATTGTCTAATCCTCATGAATTGGAATCTGCTGTGGATGATCAGGACGATGCTTGCTCCTGCAGCTGCAATGATTTTACTAATGATGATCTCAGAGCCCTTGATTTCCAAGATGATGGGGATGCCGATGGAGATCAAGCCGTTGGTTTGATTGGTGACGGTGGAAGGCGGCGAAGCGGGGCAGCGTTGGAGTACGGTTACGAGGAGGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATGATGTGGCCGTGATTCGTAATATGGATGAAATGGAAGATAAGCTCTTTTGGGACACTTGTATGGCAGGAGGGTATCCCTGA

mRNA sequence

ATGGACCAAATCAAAGATGCTTCTTCTTTCTTTCTATGGGAAGATAGTGCAGATTCTGAGGTGGATAGATTATTGTCTAATCCTCATGAATTGGAATCTGCTGTGGATGATCAGGACGATGCTTGCTCCTGCAGCTGCAATGATTTTACTAATGATGATCTCAGAGCCCTTGATTTCCAAGATGATGGGGATGCCGATGGAGATCAAGCCGTTGGTTTGATTGGTGACGGTGGAAGGCGGCGAAGCGGGGCAGCGTTGGAGTACGGTTACGAGGAGGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATGATGTGGCCGTGATTCGTAATATGGATGAAATGGAAGATAAGCTCTTTTGGGACACTTGTATGGCAGGAGGGTATCCCTGA

Coding sequence (CDS)

ATGGACCAAATCAAAGATGCTTCTTCTTTCTTTCTATGGGAAGATAGTGCAGATTCTGAGGTGGATAGATTATTGTCTAATCCTCATGAATTGGAATCTGCTGTGGATGATCAGGACGATGCTTGCTCCTGCAGCTGCAATGATTTTACTAATGATGATCTCAGAGCCCTTGATTTCCAAGATGATGGGGATGCCGATGGAGATCAAGCCGTTGGTTTGATTGGTGACGGTGGAAGGCGGCGAAGCGGGGCAGCGTTGGAGTACGGTTACGAGGAGGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATGATGTGGCCGTGATTCGTAATATGGATGAAATGGAAGATAAGCTCTTTTGGGACACTTGTATGGCAGGAGGGTATCCCTGA

Protein sequence

MDQIKDASSFFLWEDSADSEVDRLLSNPHELESAVDDQDDACSCSCNDFTNDDLRALDFQDDGDADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRNMDEMEDKLFWDTCMAGGYP
Homology
[Close]
BLAST of Lsi09G013870 vs. TrEMBL
Match: A0A0A0KBF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-41
Identity = 105/139 (75.54%), Postives = 114/139 (82.01%), Query Frame = 1 

Query: 1   MDQIKDASSFFLWEDSADSEVDRLLSNP-HELESAVDD---QDDACSCSCNDFTNDDLRA 60
           MDQIKDASSFFLWEDSADSEVD+LLS+P H+LESAVDD   Q+DACSCSCN   N+D   
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCN---NNDFSI 60

Query: 61  LDFQD--DGD-ADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRN 120
            DFQD  DGD  DGDQ +GLIGDGGRRRSGA    GYEEEEEEEEEE   S+NDV  IRN
Sbjct: 61  DDFQDAYDGDNGDGDQDIGLIGDGGRRRSGA----GYEEEEEEEEEES--SNNDVGAIRN 120

Query: 121 MDEMEDKLFWDTCMAGGYP 133
           M+EMEDK+FWDTCMAGGYP
Sbjct: 121 MNEMEDKVFWDTCMAGGYP 130

[Close]
BLAST of Lsi09G013870 vs. TrEMBL
Match: A0A067G8N3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032474mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-07
Identity = 53/142 (37.32%), Postives = 70/142 (49.30%), Query Frame = 1 

Query: 6   DASSFFLWEDSADSEVDRLLSNP--HELESAVDDQDDACSCSCNDFT--------NDDLR 65
           D SSF L E+SADSEVD L       +   A  D+DDA SCSC+           + +L+
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHELK 67

Query: 66  ALDFQDDGDADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRNM- 125
             +F DDGD         I      +   A         +  ++EEE SS D+ +  N+ 
Sbjct: 68  NEEFDDDGDGSSTDQHRQINWSSSCKIWWA---------DGADDEEEYSSWDIGINNNIS 127

Query: 126 ----DEMEDKLFWDTCMAGGYP 133
               DEMED+LFW+TCMA GYP
Sbjct: 128 RKVKDEMEDRLFWETCMAFGYP 140

[Close]
BLAST of Lsi09G013870 vs. TrEMBL
Match: A0A0D2SBH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G056600 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-06
Identity = 51/141 (36.17%), Postives = 62/141 (43.97%), Query Frame = 1 

Query: 2   DQIKDASSFFLWEDSADSEVDRLLSNPHELESAV----DDQDDACSCSCNDFTNDDL--- 61
           D++ D S FFL EDS DSE D   S+       V     D+DDA SCSC+    + L   
Sbjct: 3   DKMLDISCFFLIEDSGDSEHDSESSSMDITTVTVAGSGGDEDDAESCSCDTIGTESLDDF 62

Query: 62  --RALDFQDDGDADGDQAVGLIGD-GGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVI 121
               L F DD D D    +G   D  G  R G  ++   E                    
Sbjct: 63  YQAILKFLDDDDGDDQDLIGCNDDEDGDERPGLGMDLCREV------------------- 122

Query: 122 RNMDEMEDKLFWDTCMAGGYP 133
             MD MED+LFW+TCMA GYP
Sbjct: 123 --MDGMEDRLFWETCMAVGYP 122

[Close]
BLAST of Lsi09G013870 vs. NCBI nr
Match: gi|700190980|gb|KGN46184.1| (hypothetical protein Csa_6G067420 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 2.5e-41
Identity = 105/139 (75.54%), Postives = 114/139 (82.01%), Query Frame = 1 

Query: 1   MDQIKDASSFFLWEDSADSEVDRLLSNP-HELESAVDD---QDDACSCSCNDFTNDDLRA 60
           MDQIKDASSFFLWEDSADSEVD+LLS+P H+LESAVDD   Q+DACSCSCN   N+D   
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCN---NNDFSI 60

Query: 61  LDFQD--DGD-ADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRN 120
            DFQD  DGD  DGDQ +GLIGDGGRRRSGA    GYEEEEEEEEEE   S+NDV  IRN
Sbjct: 61  DDFQDAYDGDNGDGDQDIGLIGDGGRRRSGA----GYEEEEEEEEEES--SNNDVGAIRN 120

Query: 121 MDEMEDKLFWDTCMAGGYP 133
           M+EMEDK+FWDTCMAGGYP
Sbjct: 121 MNEMEDKVFWDTCMAGGYP 130

[Close]
BLAST of Lsi09G013870 vs. NCBI nr
Match: gi|641856195|gb|KDO74975.1| (hypothetical protein CISIN_1g032474mg [Citrus sinensis])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 53/142 (37.32%), Postives = 70/142 (49.30%), Query Frame = 1 

Query: 6   DASSFFLWEDSADSEVDRLLSNP--HELESAVDDQDDACSCSCNDFT--------NDDLR 65
           D SSF L E+SADSEVD L       +   A  D+DDA SCSC+           + +L+
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHELK 67

Query: 66  ALDFQDDGDADGDQAVGLIGDGGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVIRNM- 125
             +F DDGD         I      +   A         +  ++EEE SS D+ +  N+ 
Sbjct: 68  NEEFDDDGDGSSTDQHRQINWSSSCKIWWA---------DGADDEEEYSSWDIGINNNIS 127

Query: 126 ----DEMEDKLFWDTCMAGGYP 133
               DEMED+LFW+TCMA GYP
Sbjct: 128 RKVKDEMEDRLFWETCMAFGYP 140

[Close]
BLAST of Lsi09G013870 vs. NCBI nr
Match: gi|763761326|gb|KJB28580.1| (hypothetical protein B456_005G056600 [Gossypium raimondii])

HSP 1 Score: 58.9 bits (141), Expect = 7.6e-06
Identity = 51/141 (36.17%), Postives = 62/141 (43.97%), Query Frame = 1 

Query: 2   DQIKDASSFFLWEDSADSEVDRLLSNPHELESAV----DDQDDACSCSCNDFTNDDL--- 61
           D++ D S FFL EDS DSE D   S+       V     D+DDA SCSC+    + L   
Sbjct: 3   DKMLDISCFFLIEDSGDSEHDSESSSMDITTVTVAGSGGDEDDAESCSCDTIGTESLDDF 62

Query: 62  --RALDFQDDGDADGDQAVGLIGD-GGRRRSGAALEYGYEEEEEEEEEEEEESSNDVAVI 121
               L F DD D D    +G   D  G  R G  ++   E                    
Sbjct: 63  YQAILKFLDDDDGDDQDLIGCNDDEDGDERPGLGMDLCREV------------------- 122

Query: 122 RNMDEMEDKLFWDTCMAGGYP 133
             MD MED+LFW+TCMA GYP
Sbjct: 123 --MDGMEDRLFWETCMAVGYP 122

The following BLAST results are available for this feature:
BLAST of Lsi09G013870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G013870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBF3_CUCSA1.7e-4175.54Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1[more]
A0A067G8N3_CITSI8.2e-0737.32Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032474mg PE=4 SV=1[more]
A0A0D2SBH0_GOSRA5.3e-0636.17Uncharacterized protein OS=Gossypium raimondii GN=B456_005G056600 PE=4 SV=1[more]
BLAST of Lsi09G013870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G013870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190980|gb|KGN46184.1|2.5e-4175.54hypothetical protein Csa_6G067420 [Cucumis sativus][more]
gi|641856195|gb|KDO74975.1|1.2e-0637.32hypothetical protein CISIN_1g032474mg [Citrus sinensis][more]
gi|763761326|gb|KJB28580.1|7.6e-0636.17hypothetical protein B456_005G056600 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G013870.1Lsi09G013870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G013870Csa6G067420Cucumber (Chinese Long) v2culsiB395
Lsi09G013870CSPI06G05320Wild cucumber (PI 183967)cpilsiB398
Lsi09G013870Cucsa.363340Cucumber (Gy14) v1cgylsiB584
Lsi09G013870CmaCh17G002990Cucurbita maxima (Rimu)cmalsiB331
Lsi09G013870CmoCh17G002870Cucurbita moschata (Rifu)cmolsiB320
Lsi09G013870Cla009342Watermelon (97103) v1lsiwmB040
Lsi09G013870MELO3C021372Melon (DHL92) v3.5.1lsimeB017
Lsi09G013870ClCG06G005490Watermelon (Charleston Gray)lsiwcgB029
Lsi09G013870MELO3C021372.2Melon (DHL92) v3.6.1lsimedB019
Lsi09G013870Cla97C06G115000Watermelon (97103) v2lsiwmbB026
Lsi09G013870Bhi12G001565Wax gourdlsiwgoB023
Lsi09G013870Cp4.1LG12g02460Cucurbita pepo (Zucchini)cpelsiB101
Lsi09G013870CsGy6G005280Cucumber (Gy14) v2cgyblsiB361
Lsi09G013870CsaV3_6G005640Cucumber (Chinese Long) v3cuclsiB419
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G013870Cucumber (Gy14) v2cgyblsiB136
Lsi09G013870Melon (DHL92) v3.6.1lsimedB032
Lsi09G013870Silver-seed gourdcarlsiB061
Lsi09G013870Silver-seed gourdcarlsiB296
Lsi09G013870Silver-seed gourdcarlsiB550
Lsi09G013870Silver-seed gourdcarlsiB760
Lsi09G013870Cucumber (Chinese Long) v3cuclsiB163
Lsi09G013870Watermelon (97103) v2lsiwmbB015
Lsi09G013870Wax gourdlsiwgoB041
Lsi09G013870Bottle gourd (USVL1VR-Ls)lsilsiB006
Lsi09G013870Cucumber (Gy14) v1cgylsiB412
Lsi09G013870Cucurbita maxima (Rimu)cmalsiB225
Lsi09G013870Cucurbita maxima (Rimu)cmalsiB741
Lsi09G013870Cucurbita maxima (Rimu)cmalsiB811
Lsi09G013870Cucurbita moschata (Rifu)cmolsiB213
Lsi09G013870Cucurbita moschata (Rifu)cmolsiB733
Lsi09G013870Cucurbita moschata (Rifu)cmolsiB797
Lsi09G013870Cucurbita pepo (Zucchini)cpelsiB254
Lsi09G013870Cucurbita pepo (Zucchini)cpelsiB484
Lsi09G013870Cucurbita pepo (Zucchini)cpelsiB697
Lsi09G013870Wild cucumber (PI 183967)cpilsiB149
Lsi09G013870Cucumber (Chinese Long) v2culsiB150
Lsi09G013870Melon (DHL92) v3.5.1lsimeB029
Lsi09G013870Watermelon (Charleston Gray)lsiwcgB017
Lsi09G013870Watermelon (97103) v1lsiwmB017