CSPI06G05320 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G05320
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 4840837 .. 4841453 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATCAATATCCCACCATATATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTACTGTCTCATCCTCCGCATGAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCCGTGACGGCGGAAGGCGGCGGAGCGGGGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGATGAGTAATCTTTGCTTCTTCTGTCCTAAACCCTAAATCTGATTTTTAGTTACAAAACCATGTTCTATTCTATTTGGATCCATTCATATTTGAATTTCTAAATTTGTTTGTTTTTTTCTCTAATGAGTTGCTACAAGTTTGGAAGGGAAAAATTTAGAACTTACAACGGTCTCTCAATGCATATACGTCAATTCCGTTCA

mRNA sequence

ATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTACTGTCTCATCCTCCGCATGAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCCGTGACGGCGGAAGGCGGCGGAGCGGGGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGA

Coding sequence (CDS)

ATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTACTGTCTCATCCTCCGCATGAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCCGTGACGGCGGAAGGCGGCGGAGCGGGGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGA

Homology

[Close]

BLAST of CSPI06G05320 vs. TrEMBL
Match: A0A0A0KBF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.6e-63
Identity = 127/131 (96.95%), Postives = 128/131 (97.71%), Query Frame = 1


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCSCNNNDFSIDDF 60
           MDQIKDASSFFLWEDSADSEVDKLLSHPPH+LESAVDDADDQEDACSCSCNNNDFSIDDF
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60

Query: 61  QDAYDGDNGDGDQDIGLIRDGGRRRSGAGYEEEEEEEEEEESSNNDVGVIRNMNEMEDKV 120
           QDAYDGDNGDGDQDIGLI DGGRRRSGAGY EEEEEEEEEESSNNDVG IRNMNEMEDKV
Sbjct: 61  QDAYDGDNGDGDQDIGLIGDGGRRRSGAGY-EEEEEEEEEESSNNDVGAIRNMNEMEDKV 120

Query: 121 FWDTCMAGGYP 132
           FWDTCMAGGYP
Sbjct: 121 FWDTCMAGGYP 130

[Close]

BLAST of CSPI06G05320 vs. NCBI nr
Match: gi|700190980|gb|KGN46184.1| (hypothetical protein Csa_6G067420 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 2.3e-63
Identity = 127/131 (96.95%), Postives = 128/131 (97.71%), Query Frame = 1


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCSCNNNDFSIDDF 60
           MDQIKDASSFFLWEDSADSEVDKLLSHPPH+LESAVDDADDQEDACSCSCNNNDFSIDDF
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60

Query: 61  QDAYDGDNGDGDQDIGLIRDGGRRRSGAGYEEEEEEEEEEESSNNDVGVIRNMNEMEDKV 120
           QDAYDGDNGDGDQDIGLI DGGRRRSGAGY EEEEEEEEEESSNNDVG IRNMNEMEDKV
Sbjct: 61  QDAYDGDNGDGDQDIGLIGDGGRRRSGAGY-EEEEEEEEEESSNNDVGAIRNMNEMEDKV 120

Query: 121 FWDTCMAGGYP 132
           FWDTCMAGGYP
Sbjct: 121 FWDTCMAGGYP 130

The following BLAST results are available for this feature:

BLAST of CSPI06G05320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G05320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBF3_CUCSA	1.6e-63	96.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1	[more]

BLAST of CSPI06G05320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G05320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190980\|gb\|KGN46184.1\|	2.3e-63	96.95	hypothetical protein Csa_6G067420 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G05320.1	CSPI06G05320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G05320	Cla009342	Watermelon (97103) v1	cpiwmB564
CSPI06G05320	Csa6G067420	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G05320	MELO3C021372	Melon (DHL92) v3.5.1	cpimeB421
CSPI06G05320	ClCG06G005490	Watermelon (Charleston Gray)	cpiwcgB508
CSPI06G05320	Lsi09G013870	Bottle gourd (USVL1VR-Ls)	cpilsiB398
CSPI06G05320	MELO3C021372.2	Melon (DHL92) v3.6.1	cpimedB416
CSPI06G05320	CsaV3_6G005640	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G05320	Cla97C06G115000	Watermelon (97103) v2	cpiwmbB500
CSPI06G05320	Bhi12G001565	Wax gourd	cpiwgoB550
CSPI06G05320	Cucsa.363340	Cucumber (Gy14) v1	cgycpiB540
CSPI06G05320	CmaCh17G002990	Cucurbita maxima (Rimu)	cmacpiB374
CSPI06G05320	CmoCh17G002870	Cucurbita moschata (Rifu)	cmocpiB363
CSPI06G05320	Cp4.1LG12g02460	Cucurbita pepo (Zucchini)	cpecpiB146
CSPI06G05320	CsGy6G005280	Cucumber (Gy14) v2	cgybcpiB288

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G05320	Silver-seed gourd	carcpiB0078
CSPI06G05320	Silver-seed gourd	carcpiB0356
CSPI06G05320	Silver-seed gourd	carcpiB0640
CSPI06G05320	Cucumber (Chinese Long) v3	cpicucB339
CSPI06G05320	Watermelon (97103) v2	cpiwmbB486
CSPI06G05320	Wax gourd	cpiwgoB562
CSPI06G05320	Wild cucumber (PI 183967)	cpicpiB129
CSPI06G05320	Cucumber (Gy14) v1	cgycpiB394
CSPI06G05320	Cucurbita maxima (Rimu)	cmacpiB275
CSPI06G05320	Cucurbita maxima (Rimu)	cmacpiB916
CSPI06G05320	Cucurbita moschata (Rifu)	cmocpiB265
CSPI06G05320	Cucurbita moschata (Rifu)	cmocpiB894
CSPI06G05320	Cucumber (Chinese Long) v2	cpicuB287
CSPI06G05320	Melon (DHL92) v3.5.1	cpimeB498
CSPI06G05320	Watermelon (Charleston Gray)	cpiwcgB496
CSPI06G05320	Watermelon (97103) v1	cpiwmB510
CSPI06G05320	Cucurbita pepo (Zucchini)	cpecpiB326
CSPI06G05320	Cucurbita pepo (Zucchini)	cpecpiB635
CSPI06G05320	Bottle gourd (USVL1VR-Ls)	cpilsiB467
CSPI06G05320	Melon (DHL92) v3.6.1	cpimedB484
CSPI06G05320	Cucumber (Gy14) v2	cgybcpiB144