CsGy6G005280 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G005280
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr6 : 4838269 .. 4838664 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTATTGTCTCATCCTCCGCATCAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCGGTGACGGCGGAAGGCGGCGGAGCGGAGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGCGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGA

mRNA sequence

ATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTATTGTCTCATCCTCCGCATCAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCGGTGACGGCGGAAGGCGGCGGAGCGGAGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGCGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGA

Coding sequence (CDS)

ATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTATTGTCTCATCCTCCGCATCAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCGGTGACGGCGGAAGGCGGCGGAGCGGAGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGCGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGA

Protein sequence

MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDFQDAYDGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEEESSNNDVGAIRNMNEMEDKVFWDTCMAGGYP

Homology

[Close]

BLAST of CsGy6G005280 vs. NCBI nr
Match: KGN46184.1 (hypothetical protein Csa_6G067420 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 9.4e-45
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACXXXXXXNDFSIDDF 60
           MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACXXXXXXNDFSIDDF
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACXXXXXXNDFSIDDF 60

Query: 61  QDAYDGDNGDGDQDIGLIGDXXXXXXXXXXXXXXXXXXXXXXXXXXVGAIRNMNEMEDKV 120
           QDAYDGDNGDGDQDIGLIGD XXXXXXXXXXXXXXXXXXXXXXXXXVGAIRNMNEMEDKV
Sbjct: 61  QDAYDGDNGDGDQDIGLIGD-XXXXXXXXXXXXXXXXXXXXXXXXXVGAIRNMNEMEDKV 120

Query: 121 FWDTCMAGGYP 132
           FWDTCMAGGYP
Sbjct: 121 FWDTCMAGGYP 130

[Close]

BLAST of CsGy6G005280 vs. TrEMBL
Match: tr|A0A0A0KBF3|A0A0A0KBF3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.2e-45
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACXXXXXXNDFSIDDF 60
           MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACXXXXXXNDFSIDDF
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACXXXXXXNDFSIDDF 60

Query: 61  QDAYDGDNGDGDQDIGLIGDXXXXXXXXXXXXXXXXXXXXXXXXXXVGAIRNMNEMEDKV 120
           QDAYDGDNGDGDQDIGLIGD XXXXXXXXXXXXXXXXXXXXXXXXXVGAIRNMNEMEDKV
Sbjct: 61  QDAYDGDNGDGDQDIGLIGD-XXXXXXXXXXXXXXXXXXXXXXXXXVGAIRNMNEMEDKV 120

Query: 121 FWDTCMAGGYP 132
           FWDTCMAGGYP
Sbjct: 121 FWDTCMAGGYP 130

The following BLAST results are available for this feature:

BLAST of CsGy6G005280 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46184.1	9.4e-45	99.24	hypothetical protein Csa_6G067420 [Cucumis sativus]	[more]

BLAST of CsGy6G005280 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G005280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G005280 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBF3\|A0A0A0KBF3_CUCSA	6.2e-45	99.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G005280.1	CsGy6G005280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..110
None	No IPR available	PANTHER	PTHR35726	FAMILY NOT NAMED	coord: 3..127

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G005280	Cla009342	Watermelon (97103) v1	cgybwmB510
CsGy6G005280	Csa6G067420	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G005280	MELO3C021372	Melon (DHL92) v3.5.1	cgybmeB369
CsGy6G005280	ClCG06G005490	Watermelon (Charleston Gray)	cgybwcgB444
CsGy6G005280	CSPI06G05320	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G005280	CmaCh17G002990	Cucurbita maxima (Rimu)	cgybcmaB754
CsGy6G005280	CmoCh17G002870	Cucurbita moschata (Rifu)	cgybcmoB736
CsGy6G005280	Lsi09G013870	Bottle gourd (USVL1VR-Ls)	cgyblsiB361
CsGy6G005280	Cp4.1LG12g02460	Cucurbita pepo (Zucchini)	cgybcpeB724
CsGy6G005280	MELO3C021372.2	Melon (DHL92) v3.6.1	cgybmedB370
CsGy6G005280	CsaV3_6G005640	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G005280	Cla97C06G115000	Watermelon (97103) v2	cgybwmbB452
CsGy6G005280	Bhi12G001565	Wax gourd	cgybwgoB523

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G005280	Melon (DHL92) v3.6.1	cgybmedB431
CsGy6G005280	Watermelon (Charleston Gray)	cgybwcgB433
CsGy6G005280	Watermelon (97103) v1	cgybwmB461
CsGy6G005280	Wild cucumber (PI 183967)	cgybcpiB266
CsGy6G005280	Silver-seed gourd	carcgybB0075
CsGy6G005280	Silver-seed gourd	carcgybB0334
CsGy6G005280	Silver-seed gourd	carcgybB0606
CsGy6G005280	Cucumber (Chinese Long) v3	cgybcucB271
CsGy6G005280	Watermelon (97103) v2	cgybwmbB438
CsGy6G005280	Wax gourd	cgybwgoB532
CsGy6G005280	Cucumber (Gy14) v2	cgybcgybB104
CsGy6G005280	Cucurbita maxima (Rimu)	cgybcmaB739
CsGy6G005280	Cucurbita maxima (Rimu)	cgybcmaB865
CsGy6G005280	Cucurbita moschata (Rifu)	cgybcmoB719
CsGy6G005280	Cucurbita moschata (Rifu)	cgybcmoB847
CsGy6G005280	Cucurbita moschata (Rifu)	cgybcmoB839
CsGy6G005280	Cucurbita pepo (Zucchini)	cgybcpeB786
CsGy6G005280	Cucurbita pepo (Zucchini)	cgybcpeB836
CsGy6G005280	Cucurbita pepo (Zucchini)	cgybcpeB894
CsGy6G005280	Cucumber (Chinese Long) v2	cgybcuB258
CsGy6G005280	Bottle gourd (USVL1VR-Ls)	cgyblsiB428
CsGy6G005280	Melon (DHL92) v3.5.1	cgybmeB437