Cla009342 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009342
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 5926910 .. 5927302 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAAATCAAAGATGCTTCCTCTTTCTTTCTATGGGAAGATAGTGCAGATTCTGAGGTAGATAGATTATTATCTCATCCTCATGAATTAGAATCTGCTGTGGATGATCAGGAGGATGCTTGCTCCTGCAGCTGCAATGATTTTGCTACTGATGATCTTAGATCCCCTGATTTGCAAGATGATGGGGATGGTGATCGAGATCAAGCTGCCATTGGTTTGATCGGTGATGGTGAAAGGCAGCGGAGCGGGACCGCGTTGGAGTATAGTTACAAGGAGGAAGAAGAGGAGGAAGAAGAAGAGTCGAGTAATGATGTGGGTGTGATTCATAATACGGATGAAATGGAAGACAAGCTCTTTTGGGACACGTGTATGGCGGGTGGGTATCCCTGA

mRNA sequence

ATGGACCAAATCAAAGATGCTTCCTCTTTCTTTCTATGGGAAGATAGTGCAGATTCTGAGGTAGATAGATTATTATCTCATCCTCATGAATTAGAATCTGCTGTGGATGATCAGGAGGATGCTTGCTCCTGCAGCTGCAATGATTTTGCTACTGATGATCTTAGATCCCCTGATTTGCAAGATGATGGGGATGGTGATCGAGATCAAGCTGCCATTGGTTTGATCGGTGATGGTGAAAGGCAGCGGAGCGGGACCGCGTTGGAGTATAGTTACAAGGAGGAAGAAGAGGAGGAAGAAGAAGAGTCGAGTAATGATGTGGGTGTGATTCATAATACGGATGAAATGGAAGACAAGCTCTTTTGGGACACGTGTATGGCGGGTGGGTATCCCTGA

Coding sequence (CDS)

ATGGACCAAATCAAAGATGCTTCCTCTTTCTTTCTATGGGAAGATAGTGCAGATTCTGAGGTAGATAGATTATTATCTCATCCTCATGAATTAGAATCTGCTGTGGATGATCAGGAGGATGCTTGCTCCTGCAGCTGCAATGATTTTGCTACTGATGATCTTAGATCCCCTGATTTGCAAGATGATGGGGATGGTGATCGAGATCAAGCTGCCATTGGTTTGATCGGTGATGGTGAAAGGCAGCGGAGCGGGACCGCGTTGGAGTATAGTTACAAGGAGGAAGAAGAGGAGGAAGAAGAAGAGTCGAGTAATGATGTGGGTGTGATTCATAATACGGATGAAATGGAAGACAAGCTCTTTTGGGACACGTGTATGGCGGGTGGGTATCCCTGA

Protein sequence

MDQIKDASSFFLWEDSADSEVDRLLSHPHELESAVDDQEDACSCSCNDFATDDLRSPDLQDDGDGDRDQAAIGLIGDGERQRSGTALEYSYKEEEEEEEEESSNDVGVIHNTDEMEDKLFWDTCMAGGYP

Homology

[Close]

BLAST of Cla009342 vs. TrEMBL
Match: A0A0A0KBF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.8e-44
Identity = 98/136 (72.06%), Postives = 109/136 (80.15%), Query Frame = 1


Query: 1   MDQIKDASSFFLWEDSADSEVDRLLSHP-HELESAVDD---QEDACSCSCN--DFATDDL 60
           MDQIKDASSFFLWEDSADSEVD+LLSHP H+LESAVDD   QEDACSCSCN  DF+ DD 
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60

Query: 61  RSPDLQDDGDGDRDQAAIGLIGDGERQRSGTALEYSYKEEEEEEEEESSNDVGVIHNTDE 120
           +     D+GDGD+D   IGLIGDG R+RSG   E   +EEEEEEEE S+NDVG I N +E
Sbjct: 61  QDAYDGDNGDGDQD---IGLIGDGGRRRSGAGYE---EEEEEEEEESSNNDVGAIRNMNE 120

Query: 121 MEDKLFWDTCMAGGYP 131
           MEDK+FWDTCMAGGYP
Sbjct: 121 MEDKVFWDTCMAGGYP 130

[Close]

BLAST of Cla009342 vs. TrEMBL
Match: A0A067G8N3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032474mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-13
Identity = 54/141 (38.30%), Postives = 76/141 (53.90%), Query Frame = 1


Query: 6   DASSFFLWEDSADSEVDRLLSHP--HELESAVDDQEDACSCSCNDFATD--------DLR 65
           D SSF L E+SADSEVD L       +   A  D++DA SCSC+             +L+
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHELK 67

Query: 66  SPDLQDDGDGDRDQAAIGLIGDGERQRS-GTALEYSYKEEEEEEEEESSNDVGVIHNT-- 125
           + +  DDGDG           D  RQ +  ++ +  + +  ++EEE SS D+G+ +N   
Sbjct: 68  NEEFDDDGDGSST--------DQHRQINWSSSCKIWWADGADDEEEYSSWDIGINNNISR 127

Query: 126 ---DEMEDKLFWDTCMAGGYP 131
              DEMED+LFW+TCMA GYP
Sbjct: 128 KVKDEMEDRLFWETCMAFGYP 140

[Close]

BLAST of Cla009342 vs. TrEMBL
Match: A0A061ENY6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021111 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-10
Identity = 54/133 (40.60%), Postives = 69/133 (51.88%), Query Frame = 1


Query: 4   IKDASSFFLWEDSADSEVD--RLLSHPHELESAVD-DQEDACSCSCNDFATDDLRSPDLQ 63
           I D + F L EDS DSE+D   ++   H ++  +  D++DA SCSC+     D     LQ
Sbjct: 215 IVDVTCFLLVEDSGDSELDCEPIIQQCHNMDVGIAADEDDAESCSCDTSERLDDCYEVLQ 274

Query: 64  DDGD---GDRDQAAIGLIGDGERQRSGTALEYSYKEEEEEEEEESSNDVGVIHNTDEMED 123
            DGD    D D+ A G     E      AL Y+  EE EEE     N  G +   D MED
Sbjct: 275 LDGDQDFSDWDEPADGW-SSCEMWSIDEALGYASAEEGEEEPRFDINLCGEV--MDGMED 334

Query: 124 KLFWDTCMAGGYP 131
           +LFW+TCMA GYP
Sbjct: 335 RLFWETCMAVGYP 344

[Close]

BLAST of Cla009342 vs. TrEMBL
Match: A0A059B4B4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03671 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.5e-08
Identity = 47/141 (33.33%), Postives = 69/141 (48.94%), Query Frame = 1


Query: 1   MDQIKDASSFFLWEDSADSEVDRLLSH-PHELESAVDDQED---ACSCSCNDFA---TDD 60
           M  + D SS+ L E+SADSEVD + S        ++DD +D   +CSC   + +    DD
Sbjct: 1   MSHLADMSSYLLMEESADSEVDFVQSKVTANCGGSIDDGDDDAESCSCDAREVSGSYVDD 60

Query: 61  LRSPDLQDDGDGDRDQAAIGLIGDGERQRSGTALEYSYKEEEEEEEEESSNDVGVIH--- 120
             + D  D  +  R  ++   + D E +        S  E+E+E   +S +  G      
Sbjct: 61  CDNRDPGDQWNNLRQGSSTVWVSDREDEHM------SRDEDEDESWVDSGSGSGSRDLSK 120

Query: 121 -NTDEMEDKLFWDTCMAGGYP 131
             TD  EDK+FW+TCMA GYP
Sbjct: 121 KETDATEDKVFWETCMAIGYP 135

[Close]

BLAST of Cla009342 vs. TrEMBL
Match: A0A0D2SBH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G056600 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 51/139 (36.69%), Postives = 65/139 (46.76%), Query Frame = 1


Query: 2   DQIKDASSFFLWEDSADSEVDRLLSHPHELESAV----DDQEDACSCSCNDFAT---DDL 61
           D++ D S FFL EDS DSE D   S        V     D++DA SCSC+   T   DD 
Sbjct: 3   DKMLDISCFFLIEDSGDSEHDSESSSMDITTVTVAGSGGDEDDAESCSCDTIGTESLDDF 62

Query: 62  RSPDLQ--DDGDGDRDQAAIGLIGDGERQRSGTALEYSYKEEEEEEEEESSNDVGVIHNT 121
               L+  DD DGD DQ  IG                    ++E+ +E     + +    
Sbjct: 63  YQAILKFLDDDDGD-DQDLIGC------------------NDDEDGDERPGLGMDLCREV 122

Query: 122 -DEMEDKLFWDTCMAGGYP 131
            D MED+LFW+TCMA GYP
Sbjct: 123 MDGMEDRLFWETCMAVGYP 122

[Close]

BLAST of Cla009342 vs. NCBI nr
Match: gi|700190980|gb|KGN46184.1| (hypothetical protein Csa_6G067420 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 6.9e-44
Identity = 98/136 (72.06%), Postives = 109/136 (80.15%), Query Frame = 1


Query: 1   MDQIKDASSFFLWEDSADSEVDRLLSHP-HELESAVDD---QEDACSCSCN--DFATDDL 60
           MDQIKDASSFFLWEDSADSEVD+LLSHP H+LESAVDD   QEDACSCSCN  DF+ DD 
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60

Query: 61  RSPDLQDDGDGDRDQAAIGLIGDGERQRSGTALEYSYKEEEEEEEEESSNDVGVIHNTDE 120
           +     D+GDGD+D   IGLIGDG R+RSG   E   +EEEEEEEE S+NDVG I N +E
Sbjct: 61  QDAYDGDNGDGDQD---IGLIGDGGRRRSGAGYE---EEEEEEEEESSNNDVGAIRNMNE 120

Query: 121 MEDKLFWDTCMAGGYP 131
           MEDK+FWDTCMAGGYP
Sbjct: 121 MEDKVFWDTCMAGGYP 130

[Close]

BLAST of Cla009342 vs. NCBI nr
Match: gi|641856195|gb|KDO74975.1| (hypothetical protein CISIN_1g032474mg [Citrus sinensis])

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-13
Identity = 54/141 (38.30%), Postives = 76/141 (53.90%), Query Frame = 1


Query: 6   DASSFFLWEDSADSEVDRLLSHP--HELESAVDDQEDACSCSCNDFATD--------DLR 65
           D SSF L E+SADSEVD L       +   A  D++DA SCSC+             +L+
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHELK 67

Query: 66  SPDLQDDGDGDRDQAAIGLIGDGERQRS-GTALEYSYKEEEEEEEEESSNDVGVIHNT-- 125
           + +  DDGDG           D  RQ +  ++ +  + +  ++EEE SS D+G+ +N   
Sbjct: 68  NEEFDDDGDGSST--------DQHRQINWSSSCKIWWADGADDEEEYSSWDIGINNNISR 127

Query: 126 ---DEMEDKLFWDTCMAGGYP 131
              DEMED+LFW+TCMA GYP
Sbjct: 128 KVKDEMEDRLFWETCMAFGYP 140

[Close]

BLAST of Cla009342 vs. NCBI nr
Match: gi|590660582|ref|XP_007035437.1| (Uncharacterized protein TCM_021111 [Theobroma cacao])

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-10
Identity = 54/133 (40.60%), Postives = 69/133 (51.88%), Query Frame = 1


Query: 4   IKDASSFFLWEDSADSEVD--RLLSHPHELESAVD-DQEDACSCSCNDFATDDLRSPDLQ 63
           I D + F L EDS DSE+D   ++   H ++  +  D++DA SCSC+     D     LQ
Sbjct: 215 IVDVTCFLLVEDSGDSELDCEPIIQQCHNMDVGIAADEDDAESCSCDTSERLDDCYEVLQ 274

Query: 64  DDGD---GDRDQAAIGLIGDGERQRSGTALEYSYKEEEEEEEEESSNDVGVIHNTDEMED 123
            DGD    D D+ A G     E      AL Y+  EE EEE     N  G +   D MED
Sbjct: 275 LDGDQDFSDWDEPADGW-SSCEMWSIDEALGYASAEEGEEEPRFDINLCGEV--MDGMED 334

Query: 124 KLFWDTCMAGGYP 131
           +LFW+TCMA GYP
Sbjct: 335 RLFWETCMAVGYP 344

[Close]

BLAST of Cla009342 vs. NCBI nr
Match: gi|645233031|ref|XP_008223148.1| (PREDICTED: uncharacterized protein LOC103322969 [Prunus mume])

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08
Identity = 48/131 (36.64%), Postives = 66/131 (50.38%), Query Frame = 1


Query: 6   DASSFFLWEDSADSEVDRLL-----SHPHELESAVDDQEDACSCSCNDFATDDLRSPDLQ 65
           D S FFLWE SADSE D        ++  ++E A++  EDA SCS    +     + +  
Sbjct: 9   DVSCFFLWEGSADSEADHHTGPLNANNSSKIEIALE-AEDAESCSSGTLSDHAFGACEAL 68

Query: 66  DDGDGDRDQAAIGLIGDGERQRSGTALEYSYKEEEEEEEEESSNDVGVIHNTDEM-EDKL 125
           D    D ++            +S     Y   EE+EE+E ES     V ++ DEM ED+L
Sbjct: 69  DSYCKDAEKRKHSRCSSKVWLQSDAGSGY---EEDEEQEVESKMVCHVNNSMDEMEEDRL 128

Query: 126 FWDTCMAGGYP 131
           FW+TCMA GYP
Sbjct: 129 FWETCMAVGYP 135

[Close]

BLAST of Cla009342 vs. NCBI nr
Match: gi|629094943|gb|KCW60938.1| (hypothetical protein EUGRSUZ_H03671 [Eucalyptus grandis])

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 47/141 (33.33%), Postives = 69/141 (48.94%), Query Frame = 1


Query: 1   MDQIKDASSFFLWEDSADSEVDRLLSH-PHELESAVDDQED---ACSCSCNDFA---TDD 60
           M  + D SS+ L E+SADSEVD + S        ++DD +D   +CSC   + +    DD
Sbjct: 1   MSHLADMSSYLLMEESADSEVDFVQSKVTANCGGSIDDGDDDAESCSCDAREVSGSYVDD 60

Query: 61  LRSPDLQDDGDGDRDQAAIGLIGDGERQRSGTALEYSYKEEEEEEEEESSNDVGVIH--- 120
             + D  D  +  R  ++   + D E +        S  E+E+E   +S +  G      
Sbjct: 61  CDNRDPGDQWNNLRQGSSTVWVSDREDEHM------SRDEDEDESWVDSGSGSGSRDLSK 120

Query: 121 -NTDEMEDKLFWDTCMAGGYP 131
             TD  EDK+FW+TCMA GYP
Sbjct: 121 KETDATEDKVFWETCMAIGYP 135

The following BLAST results are available for this feature:

BLAST of Cla009342 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBF3_CUCSA	4.8e-44	72.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1	[more]
A0A067G8N3_CITSI	3.4e-13	38.30	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032474mg PE=4 SV=1	[more]
A0A061ENY6_THECC	3.5e-10	40.60	Uncharacterized protein OS=Theobroma cacao GN=TCM_021111 PE=4 SV=1	[more]
A0A059B4B4_EUCGR	9.5e-08	33.33	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03671 PE=4 SV=1	[more]
A0A0D2SBH0_GOSRA	1.2e-07	36.69	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G056600 PE=4 SV=1	[more]

BLAST of Cla009342 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190980\|gb\|KGN46184.1\|	6.9e-44	72.06	hypothetical protein Csa_6G067420 [Cucumis sativus]	[more]
gi\|641856195\|gb\|KDO74975.1\|	4.8e-13	38.30	hypothetical protein CISIN_1g032474mg [Citrus sinensis]	[more]
gi\|590660582\|ref\|XP_007035437.1\|	5.0e-10	40.60	Uncharacterized protein TCM_021111 [Theobroma cacao]	[more]
gi\|645233031\|ref\|XP_008223148.1\|	6.1e-08	36.64	PREDICTED: uncharacterized protein LOC103322969 [Prunus mume]	[more]
gi\|629094943\|gb\|KCW60938.1\|	1.4e-07	33.33	hypothetical protein EUGRSUZ_H03671 [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009342	Cla009342.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009342	Cla97C06G115000	Watermelon (97103) v2	wmwmbB406
Cla009342	Csa6G067420	Cucumber (Chinese Long) v2	cuwmB545
Cla009342	MELO3C021372	Melon (DHL92) v3.5.1	mewmB141
Cla009342	ClCG06G005490	Watermelon (Charleston Gray)	wcgwmB344
Cla009342	CSPI06G05320	Wild cucumber (PI 183967)	cpiwmB564
Cla009342	Cucsa.363340	Cucumber (Gy14) v1	cgywmB665
Cla009342	CmaCh17G002990	Cucurbita maxima (Rimu)	cmawmB358
Cla009342	CmoCh17G002870	Cucurbita moschata (Rifu)	cmowmB353
Cla009342	Lsi09G013870	Bottle gourd (USVL1VR-Ls)	lsiwmB040
Cla009342	Cp4.1LG12g02460	Cucurbita pepo (Zucchini)	cpewmB161
Cla009342	CsGy6G005280	Cucumber (Gy14) v2	cgybwmB510
Cla009342	MELO3C021372.2	Melon (DHL92) v3.6.1	medwmB139
Cla009342	CsaV3_6G005640	Cucumber (Chinese Long) v3	cucwmB571
Cla009342	Bhi12G001565	Wax gourd	wgowmB094

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009342	Watermelon (97103) v1	wmwmB138
Cla009342	Cucumber (Gy14) v1	cgywmB483
Cla009342	Cucurbita maxima (Rimu)	cmawmB250
Cla009342	Cucurbita maxima (Rimu)	cmawmB811
Cla009342	Cucurbita maxima (Rimu)	cmawmB878
Cla009342	Cucurbita moschata (Rifu)	cmowmB239
Cla009342	Cucurbita moschata (Rifu)	cmowmB802
Cla009342	Cucurbita moschata (Rifu)	cmowmB867
Cla009342	Melon (DHL92) v3.5.1	mewmB486
Cla009342	Watermelon (Charleston Gray)	wcgwmB311
Cla009342	Cucumber (Chinese Long) v2	cuwmB279
Cla009342	Cucurbita pepo (Zucchini)	cpewmB334
Cla009342	Cucurbita pepo (Zucchini)	cpewmB623
Cla009342	Cucurbita pepo (Zucchini)	cpewmB853
Cla009342	Bottle gourd (USVL1VR-Ls)	lsiwmB384
Cla009342	Cucumber (Gy14) v2	cgybwmB262
Cla009342	Melon (DHL92) v3.6.1	medwmB474
Cla009342	Silver-seed gourd	carwmB0073
Cla009342	Silver-seed gourd	carwmB0317
Cla009342	Silver-seed gourd	carwmB0604
Cla009342	Silver-seed gourd	carwmB0835
Cla009342	Cucumber (Chinese Long) v3	cucwmB288
Cla009342	Watermelon (97103) v2	wmwmbB402
Cla009342	Wax gourd	wgowmB238