CmoCh17G002870 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G002870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr17 : 1734169 .. 1734573 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAAATGAACAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATCATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCCGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCTGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

mRNA sequence

ATGGACCAAATGAACAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATCATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCCGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCTGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

Coding sequence (CDS)

ATGGACCAAATGAACAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATCATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCCGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCTGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA
Homology
[Close]
BLAST of CmoCh17G002870 vs. TrEMBL
Match: A0A0A0KBF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 89/141 (63.12%), Postives = 101/141 (71.63%), Query Frame = 1 

Query: 1   MDQMNNASSLFLWEDTADSEVDRSLSHP-HQLESAVDDP---EDARSCSCDDYATDRSAV 60
           MDQ+ +ASS FLWED+ADSEVD+ LSHP HQLESAVDD    EDA SCSC++   D S  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNN--NDFSID 60

Query: 61  DLQD--DGD-GDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAI 120
           D QD  DGD GD D+ +G  GD  R       R SGA   Y  EE+EEEEE SNN+VGAI
Sbjct: 61  DFQDAYDGDNGDGDQDIGLIGDGGR-------RRSGAG--YEEEEEEEEEESSNNDVGAI 120

Query: 121 RDMNEMEDKLFWDTCMEGGYP 135
           R+MNEMEDK+FWDTCM GGYP
Sbjct: 121 RNMNEMEDKVFWDTCMAGGYP 130

[Close]
BLAST of CmoCh17G002870 vs. NCBI nr
Match: gi|700190980|gb|KGN46184.1| (hypothetical protein Csa_6G067420 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-29
Identity = 89/141 (63.12%), Postives = 101/141 (71.63%), Query Frame = 1 

Query: 1   MDQMNNASSLFLWEDTADSEVDRSLSHP-HQLESAVDDP---EDARSCSCDDYATDRSAV 60
           MDQ+ +ASS FLWED+ADSEVD+ LSHP HQLESAVDD    EDA SCSC++   D S  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNN--NDFSID 60

Query: 61  DLQD--DGD-GDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAI 120
           D QD  DGD GD D+ +G  GD  R       R SGA   Y  EE+EEEEE SNN+VGAI
Sbjct: 61  DFQDAYDGDNGDGDQDIGLIGDGGR-------RRSGAG--YEEEEEEEEEESSNNDVGAI 120

Query: 121 RDMNEMEDKLFWDTCMEGGYP 135
           R+MNEMEDK+FWDTCM GGYP
Sbjct: 121 RNMNEMEDKVFWDTCMAGGYP 130

The following BLAST results are available for this feature:
BLAST of CmoCh17G002870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G002870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBF3_CUCSA2.0e-2963.12Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1[more]
BLAST of CmoCh17G002870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G002870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190980|gb|KGN46184.1|2.9e-2963.12hypothetical protein Csa_6G067420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G002870.1CmoCh17G002870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G002870Cucsa.363340Cucumber (Gy14) v1cgycmoB1000
CmoCh17G002870CmaCh17G002990Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G002870Cla009342Watermelon (97103) v1cmowmB353
CmoCh17G002870Csa6G067420Cucumber (Chinese Long) v2cmocuB360
CmoCh17G002870MELO3C021372Melon (DHL92) v3.5.1cmomeB306
CmoCh17G002870ClCG06G005490Watermelon (Charleston Gray)cmowcgB325
CmoCh17G002870CSPI06G05320Wild cucumber (PI 183967)cmocpiB363
CmoCh17G002870Lsi09G013870Bottle gourd (USVL1VR-Ls)cmolsiB320
CmoCh17G002870Cp4.1LG12g02460Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G002870MELO3C021372.2Melon (DHL92) v3.6.1cmomedB351
CmoCh17G002870CsaV3_6G005640Cucumber (Chinese Long) v3cmocucB0435
CmoCh17G002870Cla97C06G115000Watermelon (97103) v2cmowmbB361
CmoCh17G002870Bhi12G001565Wax gourdcmowgoB0461
CmoCh17G002870CsGy6G005280Cucumber (Gy14) v2cgybcmoB736
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G002870Watermelon (97103) v2cmowmbB351
CmoCh17G002870Wax gourdcmowgoB0472
CmoCh17G002870Cucurbita moschata (Rifu)cmocmoB198
CmoCh17G002870Cucurbita moschata (Rifu)cmocmoB308
CmoCh17G002870Cucurbita moschata (Rifu)cmocmoB310
CmoCh17G002870Cucumber (Gy14) v1cgycmoB0707
CmoCh17G002870Cucurbita maxima (Rimu)cmacmoB251
CmoCh17G002870Cucurbita maxima (Rimu)cmacmoB810
CmoCh17G002870Cucurbita maxima (Rimu)cmacmoB887
CmoCh17G002870Wild cucumber (PI 183967)cmocpiB352
CmoCh17G002870Cucumber (Chinese Long) v2cmocuB345
CmoCh17G002870Melon (DHL92) v3.5.1cmomeB335
CmoCh17G002870Watermelon (Charleston Gray)cmowcgB316
CmoCh17G002870Watermelon (97103) v1cmowmB341
CmoCh17G002870Cucurbita pepo (Zucchini)cmocpeB351
CmoCh17G002870Cucurbita pepo (Zucchini)cmocpeB365
CmoCh17G002870Cucurbita pepo (Zucchini)cmocpeB373
CmoCh17G002870Bottle gourd (USVL1VR-Ls)cmolsiB342
CmoCh17G002870Cucumber (Gy14) v2cgybcmoB317
CmoCh17G002870Melon (DHL92) v3.6.1cmomedB385
CmoCh17G002870Silver-seed gourdcarcmoB0097
CmoCh17G002870Silver-seed gourdcarcmoB0446
CmoCh17G002870Silver-seed gourdcarcmoB0824
CmoCh17G002870Silver-seed gourdcarcmoB1124
CmoCh17G002870Cucumber (Chinese Long) v3cmocucB0420