Csa6G067420 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G067420
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 4789132 .. 4789717 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCATATATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTATTGTCTCATCCTCCGCATCAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCGGTGACGGCGGAAGGCGGCGGAGCGGAGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGCGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGATGAGTAATCTTTGCTTCTTCTGTCCTAAACCCTAAATCTGATTTTTAGTTACAAAACCATGTTCTATTCTATTTGGATCCATTCATATTTGAATTTCTAAATTTGTTTGTTTTTTTCTCTAATGAGTTGCTACAAGTTTGGAAGGGAAAAATTTCGGTCTCTCAATGCATATACGTCAATTCCGT

mRNA sequence

ATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTATTGTCTCATCCTCCGCATCAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCGGTGACGGCGGAAGGCGGCGGAGCGGAGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGCGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGA

Coding sequence (CDS)

ATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTATTGTCTCATCCTCCGCATCAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCGGTGACGGCGGAAGGCGGCGGAGCGGAGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGCGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGA

Protein sequence

MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDFQDAYDGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVGAIRNMNEMEDKVFWDTCMAGGYP*

Homology

[Close]

BLAST of Csa6G067420 vs. TrEMBL
Match: A0A0A0KBF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 7.2e-72
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60
           MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60

Query: 61  QDAYDGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVGAIRNMNEMEDKVF 120
           QDAYDGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVGAIRNMNEMEDKVF
Sbjct: 61  QDAYDGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVGAIRNMNEMEDKVF 120

Query: 121 WDTCMAGGYP 131
           WDTCMAGGYP
Sbjct: 121 WDTCMAGGYP 130

[Close]

BLAST of Csa6G067420 vs. TrEMBL
Match: A0A067G8N3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032474mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1


Query: 6   DASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDFQDAYD 65
           D SSF L E+SADSEVD L       L  AV    D++DA SCSC+  +   +     ++
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMC--LRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHE 67

Query: 66  GDNGDGDQDIGLIGDGGRR---------RSGAGYEEEEEEEEEESSNNDVGAIRNMN--- 125
             N + D D    GDG             S   +  +  ++EEE S+ D+G   N++   
Sbjct: 68  LKNEEFDDD----GDGSSTDQHRQINWSSSCKIWWADGADDEEEYSSWDIGINNNISRKV 127

Query: 126 --EMEDKVFWDTCMAGGYP 131
             EMED++FW+TCMA GYP
Sbjct: 128 KDEMEDRLFWETCMAFGYP 140

[Close]

BLAST of Csa6G067420 vs. TrEMBL
Match: A0A059B4B4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03671 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 1


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFS-IDD 60
           M  + D SS+ L E+SADSEVD + S        ++DD DD  ++CSC       S +DD
Sbjct: 1   MSHLADMSSYLLMEESADSEVDFVQSKVTANCGGSIDDGDDDAESCSCDAREVSGSYVDD 60

Query: 61  FQDAYDGDNGDG-DQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVG---AIRNMNEM 120
             +   GD  +   Q    +    R       +E+E+E   +S +       + +  +  
Sbjct: 61  CDNRDPGDQWNNLRQGSSTVWVSDREDEHMSRDEDEDESWVDSGSGSGSRDLSKKETDAT 120

Query: 121 EDKVFWDTCMAGGYP 131
           EDKVFW+TCMA GYP
Sbjct: 121 EDKVFWETCMAIGYP 135

[Close]

BLAST of Csa6G067420 vs. TrEMBL
Match: M5XII7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb015629mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 1


Query: 6   DASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCS---CNNNDFSIDDFQD 65
           D S FFLWE SADSE D           S ++ A + EDA SCS    +++ F   +  D
Sbjct: 9   DVSCFFLWEGSADSEADHHTGPLNANNSSKIEIALEAEDAESCSSGTLSDHAFGACEALD 68

Query: 66  AYDGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVGAIRNMNEM-EDKVFW 125
           +Y  +  +  Q       G +  +G+GYEE+EEEE E      V   ++M+EM ED++FW
Sbjct: 69  SYCKNAEERQQSRCSSKVGLQSDAGSGYEEDEEEEVESKMVCHVN--KSMDEMEEDRLFW 128

Query: 126 DTCMAGG 129
           +TCMA G
Sbjct: 129 ETCMAVG 133

[Close]

BLAST of Csa6G067420 vs. TrEMBL
Match: A0A061ENY6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021111 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 1


Query: 4   IKDASSFFLWEDSADSEVD-KLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDFQD 63
           I D + F L EDS DSE+D + +    H ++  +  A D++DA SCSC+ ++       D
Sbjct: 215 IVDVTCFLLVEDSGDSELDCEPIIQQCHNMDVGI--AADEDDAESCSCDTSE----RLDD 274

Query: 64  AYDGDNGDGDQDIGLIGDGGRRRSGA---------GYEEEEEEEEEESSN-NDVGAIRNM 123
            Y+    DGDQD     +     S           GY   EE EEE   + N  G +  M
Sbjct: 275 CYEVLQLDGDQDFSDWDEPADGWSSCEMWSIDEALGYASAEEGEEEPRFDINLCGEV--M 334

Query: 124 NEMEDKVFWDTCMAGGYP 131
           + MED++FW+TCMA GYP
Sbjct: 335 DGMEDRLFWETCMAVGYP 344

[Close]

BLAST of Csa6G067420 vs. NCBI nr
Match: gi|700190980|gb|KGN46184.1| (hypothetical protein Csa_6G067420 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.0e-71
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60
           MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60

Query: 61  QDAYDGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVGAIRNMNEMEDKVF 120
           QDAYDGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVGAIRNMNEMEDKVF
Sbjct: 61  QDAYDGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVGAIRNMNEMEDKVF 120

Query: 121 WDTCMAGGYP 131
           WDTCMAGGYP
Sbjct: 121 WDTCMAGGYP 130

[Close]

BLAST of Csa6G067420 vs. NCBI nr
Match: gi|763761326|gb|KJB28580.1| (hypothetical protein B456_005G056600 [Gossypium raimondii])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 50/134 (37.31%), Postives = 68/134 (50.75%), Query Frame = 1


Query: 2   DQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNN-NDFSIDDF 61
           D++ D S FFL EDS DSE D   S       +      D++DA SCSC+     S+DDF
Sbjct: 3   DKMLDISCFFLIEDSGDSEHDSESSSMDITTVTVAGSGGDEDDAESCSCDTIGTESLDDF 62

Query: 62  QDAY----DGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVGAIRNMNEME 121
             A     D D+GD DQD+             G  ++E+ +E      D+     M+ ME
Sbjct: 63  YQAILKFLDDDDGD-DQDL------------IGCNDDEDGDERPGLGMDL-CREVMDGME 122

Query: 122 DKVFWDTCMAGGYP 131
           D++FW+TCMA GYP
Sbjct: 123 DRLFWETCMAVGYP 122

[Close]

BLAST of Csa6G067420 vs. NCBI nr
Match: gi|629094943|gb|KCW60938.1| (hypothetical protein EUGRSUZ_H03671 [Eucalyptus grandis])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 1


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFS-IDD 60
           M  + D SS+ L E+SADSEVD + S        ++DD DD  ++CSC       S +DD
Sbjct: 1   MSHLADMSSYLLMEESADSEVDFVQSKVTANCGGSIDDGDDDAESCSCDAREVSGSYVDD 60

Query: 61  FQDAYDGDNGDG-DQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVG---AIRNMNEM 120
             +   GD  +   Q    +    R       +E+E+E   +S +       + +  +  
Sbjct: 61  CDNRDPGDQWNNLRQGSSTVWVSDREDEHMSRDEDEDESWVDSGSGSGSRDLSKKETDAT 120

Query: 121 EDKVFWDTCMAGGYP 131
           EDKVFW+TCMA GYP
Sbjct: 121 EDKVFWETCMAIGYP 135

[Close]

BLAST of Csa6G067420 vs. NCBI nr
Match: gi|641856195|gb|KDO74975.1| (hypothetical protein CISIN_1g032474mg [Citrus sinensis])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1


Query: 6   DASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDFQDAYD 65
           D SSF L E+SADSEVD L       L  AV    D++DA SCSC+  +   +     ++
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMC--LRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHE 67

Query: 66  GDNGDGDQDIGLIGDGGRR---------RSGAGYEEEEEEEEEESSNNDVGAIRNMN--- 125
             N + D D    GDG             S   +  +  ++EEE S+ D+G   N++   
Sbjct: 68  LKNEEFDDD----GDGSSTDQHRQINWSSSCKIWWADGADDEEEYSSWDIGINNNISRKV 127

Query: 126 --EMEDKVFWDTCMAGGYP 131
             EMED++FW+TCMA GYP
Sbjct: 128 KDEMEDRLFWETCMAFGYP 140

[Close]

BLAST of Csa6G067420 vs. NCBI nr
Match: gi|596246543|ref|XP_007224565.1| (hypothetical protein PRUPE_ppb015629mg, partial [Prunus persica])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 1


Query: 6   DASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCS---CNNNDFSIDDFQD 65
           D S FFLWE SADSE D           S ++ A + EDA SCS    +++ F   +  D
Sbjct: 9   DVSCFFLWEGSADSEADHHTGPLNANNSSKIEIALEAEDAESCSSGTLSDHAFGACEALD 68

Query: 66  AYDGDNGDGDQDIGLIGDGGRRRSGAGYEEEEEEEEEESSNNDVGAIRNMNEM-EDKVFW 125
           +Y  +  +  Q       G +  +G+GYEE+EEEE E      V   ++M+EM ED++FW
Sbjct: 69  SYCKNAEERQQSRCSSKVGLQSDAGSGYEEDEEEEVESKMVCHVN--KSMDEMEEDRLFW 128

Query: 126 DTCMAGG 129
           +TCMA G
Sbjct: 129 ETCMAVG 133

The following BLAST results are available for this feature:

BLAST of Csa6G067420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBF3_CUCSA	7.2e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1	[more]
A0A067G8N3_CITSI	2.7e-10	36.69	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032474mg PE=4 SV=1	[more]
A0A059B4B4_EUCGR	2.7e-10	33.33	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03671 PE=4 SV=1	[more]
M5XII7_PRUPE	1.0e-09	38.58	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb015629mg PE=4 S...	[more]
A0A061ENY6_THECC	1.1e-08	36.23	Uncharacterized protein OS=Theobroma cacao GN=TCM_021111 PE=4 SV=1	[more]

BLAST of Csa6G067420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190980\|gb\|KGN46184.1\|	1.0e-71	100.00	hypothetical protein Csa_6G067420 [Cucumis sativus]	[more]
gi\|763761326\|gb\|KJB28580.1\|	3.9e-10	37.31	hypothetical protein B456_005G056600 [Gossypium raimondii]	[more]
gi\|629094943\|gb\|KCW60938.1\|	3.9e-10	33.33	hypothetical protein EUGRSUZ_H03671 [Eucalyptus grandis]	[more]
gi\|641856195\|gb\|KDO74975.1\|	3.9e-10	36.69	hypothetical protein CISIN_1g032474mg [Citrus sinensis]	[more]
gi\|596246543\|ref\|XP_007224565.1\|	1.5e-09	38.58	hypothetical protein PRUPE_ppb015629mg, partial [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU097029	cucumber EST collection version 3.0	transcribed_cluster
CU169793	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G067420.1	Csa6G067420.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU097029	CU097029	transcribed_cluster
CU169793	CU169793	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G067420	Cla009342	Watermelon (97103) v1	cuwmB545
Csa6G067420	MELO3C021372	Melon (DHL92) v3.5.1	cumeB427
Csa6G067420	ClCG06G005490	Watermelon (Charleston Gray)	cuwcgB481
Csa6G067420	Lsi09G013870	Bottle gourd (USVL1VR-Ls)	culsiB395
Csa6G067420	MELO3C021372.2	Melon (DHL92) v3.6.1	cumedB407
Csa6G067420	Cla97C06G115000	Watermelon (97103) v2	cuwmbB473
Csa6G067420	Bhi12G001565	Wax gourd	cuwgoB546
Csa6G067420	CSPI06G05320	Wild cucumber (PI 183967)	cpicuB314
Csa6G067420	Cucsa.363340	Cucumber (Gy14) v1	cgycuB511
Csa6G067420	CmaCh17G002990	Cucurbita maxima (Rimu)	cmacuB370
Csa6G067420	CmoCh17G002870	Cucurbita moschata (Rifu)	cmocuB360
Csa6G067420	Cp4.1LG12g02460	Cucurbita pepo (Zucchini)	cpecuB144
Csa6G067420	CsGy6G005280	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G067420	Cucumber (Chinese Long) v2	cucuB113
Csa6G067420	Cucumber (Gy14) v1	cgycuB375
Csa6G067420	Cucurbita maxima (Rimu)	cmacuB271
Csa6G067420	Cucurbita maxima (Rimu)	cmacuB896
Csa6G067420	Cucurbita moschata (Rifu)	cmocuB259
Csa6G067420	Cucurbita moschata (Rifu)	cmocuB881
Csa6G067420	Melon (DHL92) v3.5.1	cumeB496
Csa6G067420	Watermelon (Charleston Gray)	cuwcgB472
Csa6G067420	Watermelon (97103) v1	cuwmB494
Csa6G067420	Cucurbita pepo (Zucchini)	cpecuB325
Csa6G067420	Cucurbita pepo (Zucchini)	cpecuB631
Csa6G067420	Bottle gourd (USVL1VR-Ls)	culsiB460
Csa6G067420	Cucumber (Gy14) v2	cgybcuB141
Csa6G067420	Melon (DHL92) v3.6.1	cumedB475
Csa6G067420	Silver-seed gourd	carcuB0074
Csa6G067420	Silver-seed gourd	carcuB0351
Csa6G067420	Silver-seed gourd	carcuB0634
Csa6G067420	Watermelon (97103) v2	cuwmbB461
Csa6G067420	Wax gourd	cuwgoB557