CmaCh17G002990 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G002990
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 1597084 .. 1597473 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAAATGAAAAATGGTTCTTCTCTCTTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATTATTGTCTCATCCTCATCAACTCCAATCTGCTGTGGATGATCAGGAGGACGCTCGCTCCTGCAGCTGCGATGATTATGCTACTGATCGGCAAGATGATGGGGATGGTGATGAAGATCGAGCCCTTGGTTTGACCGGTGACGACACTCAATCAAGCCATCTTGATGAAACACGACCAAACAGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGATTAATAATGTGAGTACAATTCGAGATATGAATGAAATGGAAGATAAGCTCTTTTGGGATACTTGCATGGAAGGAGGATATCCGTGA

mRNA sequence

ATGGACCAAATGAAAAATGGTTCTTCTCTCTTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATTATTGTCTCATCCTCATCAACTCCAATCTGCTGTGGATGATCAGGAGGACGCTCGCTCCTGCAGCTGCGATGATTATGCTACTGATCGGCAAGATGATGGGGATGGTGATGAAGATCGAGCCCTTGGTTTGACCGGTGACGACACTCAATCAAGCCATCTTGATGAAACACGACCAAACAGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGATTAATAATGTGAGTACAATTCGAGATATGAATGAAATGGAAGATAAGCTCTTTTGGGATACTTGCATGGAAGGAGGATATCCGTGA

Coding sequence (CDS)

ATGGACCAAATGAAAAATGGTTCTTCTCTCTTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATTATTGTCTCATCCTCATCAACTCCAATCTGCTGTGGATGATCAGGAGGACGCTCGCTCCTGCAGCTGCGATGATTATGCTACTGATCGGCAAGATGATGGGGATGGTGATGAAGATCGAGCCCTTGGTTTGACCGGTGACGACACTCAATCAAGCCATCTTGATGAAACACGACCAAACAGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGATTAATAATGTGAGTACAATTCGAGATATGAATGAAATGGAAGATAAGCTCTTTTGGGATACTTGCATGGAAGGAGGATATCCGTGA

Protein sequence

MDQMKNGSSLFLWEDTADSEVDRLLSHPHQLQSAVDDQEDARSCSCDDYATDRQDDGDGDEDRALGLTGDDTQSSHLDETRPNRATLEYSSEEDEEEEEESINNVSTIRDMNEMEDKLFWDTCMEGGYP
Homology
[Close]
BLAST of CmaCh17G002990 vs. TrEMBL
Match: A0A0A0KBF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 79/139 (56.83%), Postives = 94/139 (67.63%), Query Frame = 1 

Query: 1   MDQMKNGSSLFLWEDTADSEVDRLLSH-PHQLQSAV---DDQEDARSCSCD------DYA 60
           MDQ+K+ SS FLWED+ADSEVD+LLSH PHQL+SAV   DDQEDA SCSC+      D  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60

Query: 61  TDRQDDGDGDEDRALGLTGDDTQSSHLDETRPNRATLEYSSEEDEEEEEESINNVSTIRD 120
            D  D  +GD D+ +GL GD  +          R+   Y  EE+EEEEE S N+V  IR+
Sbjct: 61  QDAYDGDNGDGDQDIGLIGDGGR---------RRSGAGYEEEEEEEEEESSNNDVGAIRN 120

Query: 121 MNEMEDKLFWDTCMEGGYP 130
           MNEMEDK+FWDTCM GGYP
Sbjct: 121 MNEMEDKVFWDTCMAGGYP 130

[Close]
BLAST of CmaCh17G002990 vs. NCBI nr
Match: gi|700190980|gb|KGN46184.1| (hypothetical protein Csa_6G067420 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 2.6e-27
Identity = 79/139 (56.83%), Postives = 94/139 (67.63%), Query Frame = 1 

Query: 1   MDQMKNGSSLFLWEDTADSEVDRLLSH-PHQLQSAV---DDQEDARSCSCD------DYA 60
           MDQ+K+ SS FLWED+ADSEVD+LLSH PHQL+SAV   DDQEDA SCSC+      D  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60

Query: 61  TDRQDDGDGDEDRALGLTGDDTQSSHLDETRPNRATLEYSSEEDEEEEEESINNVSTIRD 120
            D  D  +GD D+ +GL GD  +          R+   Y  EE+EEEEE S N+V  IR+
Sbjct: 61  QDAYDGDNGDGDQDIGLIGDGGR---------RRSGAGYEEEEEEEEEESSNNDVGAIRN 120

Query: 121 MNEMEDKLFWDTCMEGGYP 130
           MNEMEDK+FWDTCM GGYP
Sbjct: 121 MNEMEDKVFWDTCMAGGYP 130

The following BLAST results are available for this feature:
BLAST of CmaCh17G002990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G002990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBF3_CUCSA1.8e-2756.83Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067420 PE=4 SV=1[more]
BLAST of CmaCh17G002990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G002990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190980|gb|KGN46184.1|2.6e-2756.83hypothetical protein Csa_6G067420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G002990.1CmaCh17G002990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G002990Cla009342Watermelon (97103) v1cmawmB358
CmaCh17G002990Csa6G067420Cucumber (Chinese Long) v2cmacuB370
CmaCh17G002990MELO3C021372Melon (DHL92) v3.5.1cmameB313
CmaCh17G002990ClCG06G005490Watermelon (Charleston Gray)cmawcgB328
CmaCh17G002990CSPI06G05320Wild cucumber (PI 183967)cmacpiB374
CmaCh17G002990CmoCh17G002870Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G002990Lsi09G013870Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G002990Cp4.1LG12g02460Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G002990MELO3C021372.2Melon (DHL92) v3.6.1cmamedB365
CmaCh17G002990CsaV3_6G005640Cucumber (Chinese Long) v3cmacucB0442
CmaCh17G002990Cla97C06G115000Watermelon (97103) v2cmawmbB377
CmaCh17G002990Bhi12G001565Wax gourdcmawgoB0463
CmaCh17G002990CsGy6G005280Cucumber (Gy14) v2cgybcmaB754
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G002990Melon (DHL92) v3.6.1cmamedB398
CmaCh17G002990Silver-seed gourdcarcmaB0091
CmaCh17G002990Silver-seed gourdcarcmaB0455
CmaCh17G002990Silver-seed gourdcarcmaB0848
CmaCh17G002990Silver-seed gourdcarcmaB1154
CmaCh17G002990Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G002990Watermelon (97103) v2cmawmbB366
CmaCh17G002990Wax gourdcmawgoB0473
CmaCh17G002990Cucurbita maxima (Rimu)cmacmaB249
CmaCh17G002990Cucurbita maxima (Rimu)cmacmaB373
CmaCh17G002990Cucurbita maxima (Rimu)cmacmaB369
CmaCh17G002990Cucumber (Gy14) v1cgycmaB0714
CmaCh17G002990Cucumber (Gy14) v1cgycmaB0999
CmaCh17G002990Cucurbita moschata (Rifu)cmacmoB350
CmaCh17G002990Cucurbita moschata (Rifu)cmacmoB362
CmaCh17G002990Cucurbita moschata (Rifu)cmacmoB365
CmaCh17G002990Wild cucumber (PI 183967)cmacpiB359
CmaCh17G002990Wild cucumber (PI 183967)cmacpiB385
CmaCh17G002990Cucumber (Chinese Long) v2cmacuB355
CmaCh17G002990Cucumber (Chinese Long) v2cmacuB381
CmaCh17G002990Melon (DHL92) v3.5.1cmameB342
CmaCh17G002990Watermelon (Charleston Gray)cmawcgB320
CmaCh17G002990Watermelon (97103) v1cmawmB344
CmaCh17G002990Cucurbita pepo (Zucchini)cmacpeB388
CmaCh17G002990Cucurbita pepo (Zucchini)cmacpeB403
CmaCh17G002990Cucurbita pepo (Zucchini)cmacpeB412
CmaCh17G002990Bottle gourd (USVL1VR-Ls)cmalsiB353
CmaCh17G002990Cucumber (Gy14) v2cgybcmaB345