CmaCh18G005850 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGTGAGTAATTTTTTTTTTTTTTTTTTCACTAAAATTAATTCATAGATTATTAGAAACTAATTTTTTTTATTCATATGGTAGGGGGCAAACTCGTCAATTCACGTTCCCAAATTCGGAAATTGGGACACCGACGACGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGAGGTCTTCAAGCCAGCCGCGCACAACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATGAACTCAGGATCGGAGAAATTGAGCAGCGAGAGAAGCGGCTCCAATTACGCACTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCTGTGGCCGGACATGGCGTAAACCCTAAGCCGGTGACGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAAGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGGCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACCAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA ATGGCAGGGGCAAACTCGTCAATTCACGTTCCCAAATTCGGAAATTGGGACACCGACGACGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGAGGTCTTCAAGCCAGCCGCGCACAACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATGAACTCAGGATCGGAGAAATTGAGCAGCGAGAGAAGCGGCTCCAATTACGCACTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCTGTGGCCGGACATGGCGTAAACCCTAAGCCGGTGACGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAAGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGGCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACCAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA ATGGCAGGGGCAAACTCGTCAATTCACGTTCCCAAATTCGGAAATTGGGACACCGACGACGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGAGGTCTTCAAGCCAGCCGCGCACAACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGATAATGAACTCAGGATCGGAGAAATTGAGCAGCGAGAGAAGCGGCTCCAATTACGCACTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCTGTGGCCGGACATGGCGTAAACCCTAAGCCGGTGACGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAAGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGGCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACCAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNGGEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHGVNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIAHTNTTSGFTSFASKVPT
BLAST of CmaCh18G005850 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.9e-14 Identity = 71/209 (33.97%), Postives = 95/209 (45.45%), Query Frame = 1
BLAST of CmaCh18G005850 vs. TrEMBL
Match: A0A0A0M0M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699040 PE=4 SV=1) HSP 1 Score: 225.3 bits (573), Expect = 6.4e-56 Identity = 126/216 (58.33%), Postives = 145/216 (67.13%), Query Frame = 1
BLAST of CmaCh18G005850 vs. TrEMBL
Match: D7TYX9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0516g00010 PE=4 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23 Identity = 81/218 (37.16%), Postives = 110/218 (50.46%), Query Frame = 1
BLAST of CmaCh18G005850 vs. TrEMBL
Match: A0A059CFL7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01380 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.8e-21 Identity = 81/209 (38.76%), Postives = 115/209 (55.02%), Query Frame = 1
BLAST of CmaCh18G005850 vs. TrEMBL
Match: A0A166CKY8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_004869 PE=4 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20 Identity = 78/206 (37.86%), Postives = 105/206 (50.97%), Query Frame = 1
BLAST of CmaCh18G005850 vs. TrEMBL
Match: A0A061GGZ7_THECC (RPM1 interacting protein 4, putative OS=Theobroma cacao GN=TCM_030331 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 4.8e-19 Identity = 79/215 (36.74%), Postives = 102/215 (47.44%), Query Frame = 1
BLAST of CmaCh18G005850 vs. TAIR10
Match: AT3G25070.1 (AT3G25070.1 RPM1 interacting protein 4) HSP 1 Score: 79.7 bits (195), Expect = 2.2e-15 Identity = 71/209 (33.97%), Postives = 95/209 (45.45%), Query Frame = 1
BLAST of CmaCh18G005850 vs. NCBI nr
Match: gi|659118177|ref|XP_008458983.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]) HSP 1 Score: 235.3 bits (599), Expect = 8.9e-59 Identity = 129/216 (59.72%), Postives = 147/216 (68.06%), Query Frame = 1
BLAST of CmaCh18G005850 vs. NCBI nr
Match: gi|778664446|ref|XP_011660296.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus]) HSP 1 Score: 225.3 bits (573), Expect = 9.2e-56 Identity = 126/216 (58.33%), Postives = 145/216 (67.13%), Query Frame = 1
BLAST of CmaCh18G005850 vs. NCBI nr
Match: gi|359496977|ref|XP_002263923.2| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Vitis vinifera]) HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23 Identity = 81/218 (37.16%), Postives = 110/218 (50.46%), Query Frame = 1
BLAST of CmaCh18G005850 vs. NCBI nr
Match: gi|731439877|ref|XP_010647139.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Vitis vinifera]) HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23 Identity = 81/218 (37.16%), Postives = 110/218 (50.46%), Query Frame = 1
BLAST of CmaCh18G005850 vs. NCBI nr
Match: gi|731441020|ref|XP_010646963.1| (PREDICTED: RPM1-interacting protein 4-like, partial [Vitis vinifera]) HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22 Identity = 80/218 (36.70%), Postives = 109/218 (50.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |