MELO3C014946 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014946
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cytochrome c oxidase subunit 6a, mitochondrial-like protein
Location	chr6 : 23429535 .. 23434800 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCGTAAGGGTTTGGTCATTTCGTGGACTCGGCAATTTGTGAGAGAGAATCAAAGAGAAAATGGCAATGGCGTCGATCCGATCCAATTTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTAAGTCTCTCTCTCTCGCTTAGGTTTTATTTTTTTTTTAATTGCGATGGTATATGCACTCCAACTGATTCACGTCTCTCTCTATTTGCTTGTCTTTATTGACGGATTTTTTTCCTTGTTGCTTTCAGCAACTTTGTTTAGTCCATTATATGTTTTGATTTCATTCATTTTCCCGCCCTGTTTTCATCTGACGAAATGGGGGAAAGAAGGAGGATGTTGATTATTCAATCGTGTTCAAATTTTGTTTCAAACTAATTTGATTAGATGCTTTTCGTTCCTTTTAGATTGAAAGTCTTGCCTTGCAGAAGGAGGTGTTTTTGAAATTTGAACTCAGATTTAAACGTTATTCAATAGTTTTTTAAAATAATCGGATGGGATTATATACATTGTATTTGACAATTAACTGTGCATGGGGTTTCCAGCCGCTGAGAAGCAGATTTGGTTTAAAGCTTAGGAAAGAAGGCAAAGGGGGAATGATCTATTACTGAGTGGCAACACTATGATTGTTGATTTCTATAATTGAGTAAAAAATCTTGGATTTTGTGGTATATTTAATTTACCTCTGATTTCGAGTGAGTAAGGCACGGTGGAAGGGAAACACAAATGCATCTAATTTATTAGAGGGTTAAGACCTTTAGTCAAGGAACTCTTCTCCAGGTTGAAGGGTGAGTTTTTTCACCTATAATCTGATGCTTTCTTTTTTTTTAATTAATTCTTTTCTGGGATGGAGGTCATGAAAGTTTTTCCACCTCTAATCGTATATCTGTTTCTTCTTTCTCTCACTCCTCTCCACATTTCTCTTTCCTTTTCTTCTCTCACACGTTTATCGGTTGTGGGTGGTGGTGGGTGGGGGGGGGGGATTTCTTTCTTTTTTTGGAGTAGGTAAGTACACTACTGGTGCTAAGCTACTTCAGTATTGTGAATTTATTTTCTAGTAATCCACCATAACATATACTTTTGATGCCTCGTTACATTTGTTGGGTGCATATGTATTGTTAGTTTTAAATACTATTTCATTCTTATATTGTTCAAGCACGTAGGAAGAAAAAATTGAGTGCAAGATTGCTATGTCGCTTGTACTCCTTATGTTTGATCTCTCACCTTCCTTTTTTTTTTTTTTTATGTCAGGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCTGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATTTATCAAAGGGGCACCCCCACCATGAAGAGCCCCCTGTAATCTATAACTTCAGTCAATTTATACTTTTTCCTCCAGTGCTGAGTTCCTAGTTGCATTGTGGAATTCTGTATTGTACTCTCATGTGTTAACCATTTATTTTTGTTTGGGTTTTCACTGTCTGCAGGCATATCCATATTTGCACATTCGCAATAAAGAGTTCCCTTGGGGTAAGTTTCCACTTCATTCAAAGTTATATGACATCTTGTATATCTCTTTGCAATTGCTATTTGGGTTTTATAATATATTTTAAGTCAAAACATATAATTTCCATGAAGTGGTGGTTTTTTATTTTTTATTTTATTTTAATTTGATTTTGGTGCTAGTTGTTTCCTTAAAATGAACTAGTAAAGCATTGCTCTTGTGAATTTAAATTTAGACGTAATGCAGAGTTTCCAATAAAACAGTGATTATGCTCCTTTGCAAACTCAGTCATAATTATTGGTGCGTTTTCTTTATTTGGATTGGACATTGTTGATTGTAATCAGAAAGGAAAGTTGATTAGCAGTCCTTATTTTCTCTGTTTACGTTGCTTGATCACAATGTTAGTAAAATAATGTTGGAATCTGGAAGCTGAACCATCCTATTAGTTTGCCAAGTAAATGTACAGCTATTATGTAACCAATAGATTTACTACTAACTCAGCAGCTAGTAACTAATATGCTTGTAACTACCTCGTTCAGCTTGCTAGCAATCTTTAGATCTAGTTCATTACCTTCTCCTTTCATTAATCCAACTCTAACTTAACTTTGAAACTCTTCAACCCCAAATGTTGAATGGGGTAGTTCAACGGCTTCCTCTGTTGGTTGCTTGATCATCTCAGGGTTTTATGGACACTTCCTGGTTTATTATTATTTATTTTATTTTTTAGGACAAGAAACAATTATGTATTACCCATTAACAAAAGAGACAGCCTAAGGGCAAGGAGTTGAGGGCCTACAAAACTAATAAAGAAGAGTCTTCCAATTGTTAAGAATCATAAGAAGGCTATAATTTCCAAAAAAGAAAAAAATGGTGTAATTTATGCACCACCAAGAGTTTGTATGCTGGACAAAGACCAGAAAGAATCGAAAGAAGCAAACTTATCTTCAAACTTCTTGCTCTTTCTTTCTTTCCAAAGACACCCAAGAAGAGCACGAGTATCACATCTTCAATGGATTTTGCCCACCCACAAAATCTACCACCCTCCAACTCGTCGATCATCCAATCATCAATCATCTTAGGAAGGCTTCCTACCGACCCAAATATTTAGAAAAATGAAGAACACGCTTTTTGGCAACAAACTCTCAATGTAAAAACTAAAAACAGGTGATACACAATTTACATCTCTACAAGGCAAGATAGCACATGGAAGGAGAAAGTGACCAACTATAGAACTTCCTTTGGGGCTTCTCAGGGGTATTCAAGCTTCTAAAACCAGTGACTAGAGGAAGCTTCCATCCCTAGGATCCCTCTCCACTCCCTTAAACACCCTACTGTTTTGCTTACCCCACAAAACTTAAGAGACCGAAACTATCTGGCAATCGAAAGAAACCAACCTTTCTTTCCAAATGGCTATCTGTGGAGGAACTCCTTGATCATAGCACTGACATATCTATAACGAACGATCATCATACTAAGGGTGTGGAAAAAGGAACCCTTGACACCACTTACAAAATCACAACATCAAAGAATAGGGTCTAGGTCTTTCTTCACCTTTTGTCAAAGAATACAACAAAAAGGCCCAATAAGCCAAGATATCTTCTTGATTAGCTTGTCCAGCGTGTTAGCACGACTGCAAAGAACCTACCAAGCATAGAGGGCCACCTTTCTAGGGACCTTAATCCTCTAAAAGATCGATTCACCTAAGGGGAAAGGAAGAAAACTTGCATGAGAACTCTTCTGAAGGATTGGGGCTCCAAAATCTGACATCCTTTCTCCCCAATCTATAGGGGTGACTCTTGAGTAAACAAAGAATAGTGGTCACATCTGTTGCTTCCCTATTAGAAAGAGAACAAGTAAAATCCAATTGAAAAGGAACAAAAGCTCTCAGACCACACTAAAAAGGGACAACAAAATGACTTTTGAAAGATGACAATTAATACAATCAAGAAAACATATCCCAATGGGACGTTTGGGGCAATGAGTTGGTTATTATAGTCGTTGGTTATTATAGTCGTAGGTTATTATAGTTTGGTTATAATAGTTTGCGTGCAGGATGTAGATTATTTTAGTTTGGGTGATAATAACATGCATTTGAGTAAACTATCTTAGTTTGAGAAGAAAATAGTAAACACTATAACAAAGAATAAGAAAATGACAAATGTAAAACATAAAATCTTGTAGCAGATAATAAAAACTATAGCAAATAGGGGTTTTGGAGTAGTGTTGATTGTAATTAATTGGAGACTACAAGATAGTGTTTACTGTAGCAAGGAGGTGGTTATTATAATCTTAGATAGTTCATCCTCCAAACAACTCCAAAGAGGTTGTCCACTGTTCTAGCTTTCGAATTAAGTTCTAGCCATGAAGTAGTAGTTGATAATAATTGGTAGGACATTCTTTACAATATTTTCATAGAACTCTAAAAAATGATCTCGTAAAGGGGCGTCACCAAACTAATAGGCTGATTCACGAACTCTAGCTATCTTCTTCTTCTTTTGTCTTTTCTTGTACATGTCCTTTTTCTGTTACTTGTTTGACCGGTCTTCCCTAAAGAGTCGGTCTTGCACTTTGGACAATTGATTCTAAAAAAAGTGAAGGTTTTTACTTTGCAAGTTTTACATGGTTGTGCTAACTAACACGATGGATTGGCTTGTGAAGAAGTTTCCCTTGCTTGGCCCCCTTTGCTGTATTCTTCGTTGGAAGATGAAGGAAGACTTGGATCATATTCTCTGTAGTTCTAAGTTATCGAGAGCTATGTGGGGTTACTCTATTAGACAATTGGGTTCTTGCATGCTAGACATAGGGTTACTAATGATATGACTTGGCGAGTTCCTCCTCCATTTTGCCCTTTTGGAAGGAGGAGGTGCTTTTTATGGATGGCCAGGCTTTGGGTTTTGTAGGGGAATAAAATAGCAGGATGTTGAGGGACTATTTTGATGTTTGGTCCTTTGTTTTAGTTACTACATTTTGCTTTGGGTTTCAGCTTCAAAGACCTTTTGTAACTATTCTGTTGATTCTATTTTGCATAGGTGAAGTCTCTTCCTTGAGAGGGATTTGTCTCTCTTGTATGCTTTTAGGTTTTTGAAGTTGTTCTTAAACCCTTTTTGGGGAACTGTTTGCTAACAGTTGCTTTCCTCATTTATGAAAGATGGCTGAATTTGATGGATGATCTGATATTCATTCTCATCTTTCCTCTATGTTCCTTGCTCAACTGCTTCTTCACCGTTTATTATCCATTGTCAAAGTAAAATTGTTTTTACTGATTTAAAAAATAATATATATATATATATATATGTTTCTTGTGCTTTAGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTAAGGATTACTTTTGGGTTCAAAAGCGCATCAGAGTTCTCATTCTGTTCCATATCAGAAAAGACTTCATGGACTGGTTGGTTTAGATTTTTTCTCTGCAAAGGAAAAGCCATGGCATGGCCATTTTGCATTTGTTAAAATGCTATCAGAATATTATGTGAATCATGGTTTGAAGTTCTTTTTTTTGTCACAGCCTTCCTTCCTGATTAATAAGATAAAATTTCTTCCCATTGTGCTAAAAGGTCTGCGGTAAGCTTTGTTTGGGTTGAAAAGTGAGCTTCTATAACTTCTGGTACTTGATGGGTAATAATTGTTACTTTGGTGAACTGAAACAATTGCTAGGTGTTATCAACACAATTGGATCATTTTCAT

mRNA sequence

AATCGTAAGGGTTTGGTCATTTCGTGGACTCGGCAATTTGTGAGAGAGAATCAAAGAGAAAATGGCAATGGCGTCGATCCGATCCAATTTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCTGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATTTATCAAAGGGGCACCCCCACCATGAAGAGCCCCCTGTAATCTATAACTTCAGTCAATTTATACTTTTTCCTCCAGTGCTGAGTTCCTAGTTGCATTGTGGAATTCTGTATTGTACTCTCATGTGTTAACCATTTATTTTTGTTTGGGTTTTCACTGTCTGCAGGCATATCCATATTTGCACATTCGCAATAAAGAGTTCCCTTGGGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTAAGGATTACTTTTGGGTTCAAAAGCGCATCAGAGTTCTCATTCTGTTCCATATCAGAAAAGACTTCATGGACTGGTTGGTTTAGATTTTTTCTCTGCAAAGGAAAAGCCATGGCATGGCCATTTTGCATTTGTTAAAATGCTATCAGAATATTATGTGAATCATGGTTTGAAGTTCTTTTTTTTGTCACAGCCTTCCTTCCTGATTAATAAGATAAAATTTCTTCCCATTGTGCTAAAAGGTCTGCGGTAAGCTTTGTTTGGGTTGAAAAGTGAGCTTCTATAACTTCTGGTACTTGATGGGTAATAATTGTTACTTTGGTGAACTGAAACAATTGCTAGGTGTTATCAACACAATTGGATCATTTTCAT

Coding sequence (CDS)

ATGGCAATGGCGTCGATCCGATCCAATTTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCTGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATTTATCAAAGGGGCACCCCCACCATGAAGAGCCCCCTGTAATCTATAACTTCAGTCAATTTATACTTTTTCCTCCAGTGCTGAGTTCCTAG

Protein sequence

MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPVIYNFSQFILFPPVLSS*

Homology

[Close]

BLAST of MELO3C014946 vs. Swiss-Prot
Match: COX6A_ARATH (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-17
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS   RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPP 74
          Y LSKGH H E+PP
Sbjct: 61 YVLSKGHHHGEDPP 74

[Close]

BLAST of MELO3C014946 vs. TrEMBL
Match: A0A0A0L3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 3  MASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 62
          MASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPP 74
          SKGHPHHEEPP
Sbjct: 61 SKGHPHHEEPP 71

[Close]

BLAST of MELO3C014946 vs. TrEMBL
Match: A0A0B0PN89_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13220 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-25
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1


Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAH-DDARETAKWEKITYAGIVTCSILAF 60
          MAMAS+RS  LRAALRG SR +  PKRGFASS+H DDA ETAKWEKITY G+ TC++LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPP 74
          YNLSKGHPHHEEPP
Sbjct: 61 YNLSKGHPHHEEPP 74

[Close]

BLAST of MELO3C014946 vs. TrEMBL
Match: A0A0D2NVS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G034000 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-25
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1


Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAH-DDARETAKWEKITYAGIVTCSILAF 60
          MAMAS+RS  LRAALRG SR +  PKRGFASS+H DDA ETAKWEKITY G+ TC++LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPP 74
          YNLSKGHPHHEEPP
Sbjct: 61 YNLSKGHPHHEEPP 74

[Close]

BLAST of MELO3C014946 vs. TrEMBL
Match: A0A061DPC7_THECC (Cytochrome c oxidase-related OS=Theobroma cacao GN=TCM_000877 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.1e-24
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAH-DDARETAKWEKITYAGIVTCSILAF 60
          MAMAS+RS FLR  LRG SR S  PKRGFASS+H DDA ETAKWEKITY GI TC++LA 
Sbjct: 1  MAMASVRSGFLRTVLRGGSRPSATPKRGFASSSHHDDAYETAKWEKITYLGIATCTVLAI 60

Query: 61 YNLSKGHPHHEEPP 74
          YNLSKGH HHEEPP
Sbjct: 61 YNLSKGHHHHEEPP 74

[Close]

BLAST of MELO3C014946 vs. TrEMBL
Match: A0A059AMS2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00649 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.1e-24
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA +RS  LR++LRG +R S  PKR FASSAHDDA ETAKWEKITYAGIVTC+ILA Y
Sbjct: 1  MAMAMVRSALLRSSLRGGARPSSVPKRNFASSAHDDAHETAKWEKITYAGIVTCTILAIY 60

Query: 61 NLSKGHPHHEEP 73
          NLSKGHPH+EEP
Sbjct: 61 NLSKGHPHYEEP 72

[Close]

BLAST of MELO3C014946 vs. TAIR10
Match: AT4G37830.1 (AT4G37830.1 cytochrome c oxidase-related)

HSP 1 Score: 90.1 bits (222), Expect = 7.5e-19
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS   RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPP 74
          Y LSKGH H E+PP
Sbjct: 61 YVLSKGHHHGEDPP 74

[Close]

BLAST of MELO3C014946 vs. NCBI nr
Match: gi|778676556|ref|XP_011650607.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.9e-41
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 1


Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPVIYNFSQFILFPPVLSS 91
          NLSKGHPHHEEPPV YNFSQFILFP VLS+
Sbjct: 61 NLSKGHPHHEEPPVSYNFSQFILFPQVLST 90

[Close]

BLAST of MELO3C014946 vs. NCBI nr
Match: gi|659098495|ref|XP_008450167.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 6.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPP 74
          NLSKGHPHHEEPP
Sbjct: 61 NLSKGHPHHEEPP 73

[Close]

BLAST of MELO3C014946 vs. NCBI nr
Match: gi|778676558|ref|XP_011650608.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-33
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPP 74
          NLSKGHPHHEEPP
Sbjct: 61 NLSKGHPHHEEPP 73

[Close]

BLAST of MELO3C014946 vs. NCBI nr
Match: gi|700201190|gb|KGN56323.1| (hypothetical protein Csa_3G115610 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 3  MASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 62
          MASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPP 74
          SKGHPHHEEPP
Sbjct: 61 SKGHPHHEEPP 71

[Close]

BLAST of MELO3C014946 vs. NCBI nr
Match: gi|823139668|ref|XP_012469699.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial-like [Gossypium raimondii])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1


Query: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAH-DDARETAKWEKITYAGIVTCSILAF 60
          MAMAS+RS  LRAALRG SR +  PKRGFASS+H DDA ETAKWEKITY G+ TC++LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPP 74
          YNLSKGHPHHEEPP
Sbjct: 61 YNLSKGHPHHEEPP 74

The following BLAST results are available for this feature:

BLAST of MELO3C014946 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COX6A_ARATH	1.3e-17	62.16	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A ...	[more]

BLAST of MELO3C014946 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3I0_CUCSA	2.3e-32	98.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115610 PE=3 SV=1	[more]
A0A0B0PN89_GOSAR	7.8e-25	77.03	Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu...	[more]
A0A0D2NVS1_GOSRA	7.8e-25	77.03	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G034000 PE=3 SV=1	[more]
A0A061DPC7_THECC	5.1e-24	77.03	Cytochrome c oxidase-related OS=Theobroma cacao GN=TCM_000877 PE=3 SV=1	[more]
A0A059AMS2_EUCGR	5.1e-24	77.78	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00649 PE=3 SV=1	[more]

BLAST of MELO3C014946 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37830.1	7.5e-19	62.16	cytochrome c oxidase-related	[more]

BLAST of MELO3C014946 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676556\|ref\|XP_011650607.1\|	2.9e-41	95.56	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X1 [Cucumis sa...	[more]
gi\|659098495\|ref\|XP_008450167.1\|	6.0e-34	100.00	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo]	[more]
gi\|778676558\|ref\|XP_011650608.1\|	3.0e-33	98.63	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sa...	[more]
gi\|700201190\|gb\|KGN56323.1\|	3.3e-32	98.59	hypothetical protein Csa_3G115610 [Cucumis sativus]	[more]
gi\|823139668\|ref\|XP_012469699.1\|	1.1e-24	77.03	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial-like [Gossypium raimon...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001349	Cyt_c_oxidase_su6a
IPR001349	Cyt_c_oxidase_su6a

Vocabulary: **Molecular Function**
Term	Definition
GO:0004129	cytochrome-c oxidase activity
GO:0004129	cytochrome-c oxidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005743	mitochondrial inner membrane
GO:0005751	mitochondrial respiratory chain complex IV
GO:0005743	mitochondrial inner membrane
GO:0005751	mitochondrial respiratory chain complex IV

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015992	proton transport
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47611	melon EST collection version 4.0	transcribed_cluster
MU55008	melon EST collection version 4.0	transcribed_cluster
MU62059	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014946T1	MELO3C014946T1	mRNA
MELO3C014946T2	MELO3C014946T2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47611	MU47611	transcribed_cluster
MU55008	MU55008	transcribed_cluster
MU62059	MU62059	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001349	Cytochrome c oxidase, subunit VIa	GENE3D	G3DSA:4.10.95.10		coord: 31..93 score: 3.3
IPR001349	Cytochrome c oxidase, subunit VIa	PIR	PIRSF000277	COX_VIa	coord: 1..98 score: 1.1
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..98 score: 9.9
IPR001349	Cytochrome c oxidase, subunit VIa	PFAM	PF02046	COX6A	coord: 35..88 score: 3.
IPR001349	Cytochrome c oxidase, subunit VIa	unknown	SSF81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..97 score: 4.18

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C014946	Csa3G115610	Cucumber (Chinese Long) v2	cumeB244
MELO3C014946	ClCG10G008050	Watermelon (Charleston Gray)	mewcgB416
MELO3C014946	Cla97C10G191520	Watermelon (97103) v2	mewmbB431
MELO3C014946	Bhi11G000745	Wax gourd	mewgoB500
MELO3C014946	CSPI03G06960	Wild cucumber (PI 183967)	cpimeB242
MELO3C014946	Cucsa.260150	Cucumber (Gy14) v1	cgymeB437
MELO3C014946	CmaCh04G008500	Cucurbita maxima (Rimu)	cmameB689
MELO3C014946	CmaCh16G007350	Cucurbita maxima (Rimu)	cmameB292
MELO3C014946	CmoCh04G009100	Cucurbita moschata (Rifu)	cmomeB680
MELO3C014946	Lsi05G008050	Bottle gourd (USVL1VR-Ls)	lsimeB380
MELO3C014946	Cp4.1LG14g00910	Cucurbita pepo (Zucchini)	cpemeB186
MELO3C014946	Cp4.1LG01g09060	Cucurbita pepo (Zucchini)	cpemeB409
MELO3C014946	CsGy3G007080	Cucumber (Gy14) v2	cgybmeB211
MELO3C014946	Carg05850	Silver-seed gourd	carmeB0991
MELO3C014946	Carg14249	Silver-seed gourd	carmeB0923
MELO3C014946	CsaV3_3G007040	Cucumber (Chinese Long) v3	cucmeB248

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014946	Cucurbita moschata (Rifu)	cmomeB285
MELO3C014946	Watermelon (Charleston Gray)	mewcgB413
MELO3C014946	Watermelon (97103) v2	mewmbB427