Cla97C10G191520 (gene) Watermelon (97103) v2

NameCla97C10G191520
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptioncytochrome c oxidase subunit 6a, mitochondrial
LocationCla97Chr10 : 12324160 .. 12325552 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGCGTCGATCCGATCTAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAGCGCGGCTTTGCTTCCTCTGCTCACGATGATGCTCGTAAGTCTCTCTATCTCAGTACTTCTTTTTTTTTTTTTTTTTAATTATTATTATTGTGATCGTGTATGCGCTGCAATTGGTTCACGTCTCTCTCGATTTGCTTTTCTTTATCGACGGATTTTTTTGTTACTTTCGGCAACTTTGTTTAGTCCGTTGTATGTTTGATTTCATTCATTTTCCTGCCCTGTTTTTCATCTGACGAAATGGGGGAAAGAAGGATGATTTTTATTATCGAATCATGTTAAGAAATTTGGTCCAAAATATTTTGATTGGATGCTTTATGTTCTTTTTAGATTGGAAGTCTTGCAAGGGGAGGTGTTCTTTAATTTGAATTCAGATTTAAATGTTATTCAACAGTTTTGTTATATTATCGGATGGGATATACATTATATTTGACAATTAACTGTGCATGGGGTTTCCAGTCGCTGACATGAAGGAAAGGAAACTCAAATGCAGTAAATTTATTAGAGGGTTAAGACCTTTAATGAAGAAATTCTCCACCGAGTTAAAGGTCGTGGAAGTTTTTTCACCTCTAATCTTATGCTTCTTCTTCTTTAATTAATTCTTTTTCTGGATGGAGGTCATGGAAGTTTTTCCACATCTAATCTTATGCTTTCTTCTTCTTTCTCTCCCCCCTCCCCCATTTTTTCTCTTCCTTCCTTTTCTTTTTTCACATGTTTCTCAGTGGGGGCGTGGGTGGGGGGACAAATTTCTTCCGTTTTTGGGGTGGGTTTACGTAAACTGTTGGAGCTAAGCGAATTCAGTGCTGTGAATTTATTTTCCAGTAATCCACCATAGCATATATTTCTGATGCGTCGTTATATTTGTTGGGTACAAATATGTATTGTTATTTTTAAATACTATTTCAGACTTTATTGTACAAGCAAGGAAGGAAAAACTGTATGCAGGAGTGGTGTGATGCTTGTACTCCTTATGTTTGATCTCTCACCTTTCTTTCTTTATGTCAGGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCACTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGTGAGCTTTAACTTCAGTCAATTTATACTTTTTCCTTGACTTCTCAGTATCTTAGTTGCATTATGGAATTATGCATTGTACTCTCATGTGTTACCCATTTATTTTTGTTTGGGTTTCGTTGTATGCAGGCATATCCGTATCTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTTCCACTTACTTCATTACAAGTTCTATGA

mRNA sequence

ATGGCAATGGCGTCGATCCGATCTAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAGCGCGGCTTTGCTTCCTCTGCTCACGATGATGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCACTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCGTATCTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTTCCACTTACTTCATTACAAGTTCTATGA

Coding sequence (CDS)

ATGGCAATGGCGTCGATCCGATCTAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAGCGCGGCTTTGCTTCCTCTGCTCACGATGATGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCACTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCGTATCTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTTCCACTTACTTCATTACAAGTTCTATGA

Protein sequence

MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGKFPLTSLQVL
BLAST of Cla97C10G191520 vs. NCBI nr
Match: XP_011650608.1 (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMASIRSNLLRAA+RGASRNSVQPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPY+HIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 88

BLAST of Cla97C10G191520 vs. NCBI nr
Match: XP_008450167.1 (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMASIRSN LRAA+RGASRNSVQPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

BLAST of Cla97C10G191520 vs. NCBI nr
Match: KGN56323.1 (hypothetical protein Csa_3G115610 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 3  MASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFYNL 62
          MASIRSNLLRAA+RGASRNSVQPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYLHIRNKEFPWG 89
          SKGHPHHEEPPAYPY+HIRNKEFPWG
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWG 86

BLAST of Cla97C10G191520 vs. NCBI nr
Match: XP_023001309.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 173.7 bits (439), Expect = 3.1e-40
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 0

Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGIA CT LAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

BLAST of Cla97C10G191520 vs. NCBI nr
Match: XP_023551866.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 6.8e-40
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI +C+ILAFY
Sbjct: 1  MAMATIRSNLLRAALRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

BLAST of Cla97C10G191520 vs. TrEMBL
Match: tr|A0A1S3BPM0|A0A1S3BPM0_CUCME (cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491837 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60
          MAMASIRSN LRAA+RGASRNSVQPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

BLAST of Cla97C10G191520 vs. TrEMBL
Match: tr|A0A0A0L3I0|A0A0A0L3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.0e-41
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 3  MASIRSNLLRAAVRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFYNL 62
          MASIRSNLLRAA+RGASRNSVQPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYLHIRNKEFPWG 89
          SKGHPHHEEPPAYPY+HIRNKEFPWG
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWG 86

BLAST of Cla97C10G191520 vs. TrEMBL
Match: tr|A0A0B0PN89|A0A0B0PN89_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum OX=29729 GN=F383_13220 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIATCTILAF 60
          MAMAS+RS LLRAA+RG SR +  PKRGFASS+ HDDA ETAKWEKITY G+ATCT+LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89

BLAST of Cla97C10G191520 vs. TrEMBL
Match: tr|A0A0D2NVS1|A0A0D2NVS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G034000 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-35
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIATCTILAF 60
          MAMAS+RS LLRAA+RG SR +  PKRGFASS+ HDDA ETAKWEKITY G+ATCT+LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89

BLAST of Cla97C10G191520 vs. TrEMBL
Match: tr|A0A2P5R238|A0A2P5R238_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22201 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.7e-35
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 0

Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIATCTILAF 60
          MAMAS+RS LLRAA+RG SR +  PKRGFASS+ HDDA ETAKWEKITY G ATCT+LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRRTAPPKRGFASSSHHDDAYETAKWEKITYLGAATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89

BLAST of Cla97C10G191520 vs. Swiss-Prot
Match: sp|Q9T070|COX6A_ARATH (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.0e-28
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 0

Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIATCTILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

BLAST of Cla97C10G191520 vs. TAIR10
Match: AT4G37830.1 (cytochrome c oxidase-related)

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-29
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 0

Query: 1  MAMASIRSNLLRAAVRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIATCTILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011650608.11.2e-4195.45PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sa... [more]
XP_008450167.12.1e-4195.45PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo][more]
KGN56323.11.1e-4095.35hypothetical protein Csa_3G115610 [Cucumis sativus][more]
XP_023001309.13.1e-4093.18cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima][more]
XP_023551866.16.8e-4092.05cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
tr|A0A1S3BPM0|A0A1S3BPM0_CUCME1.4e-4195.45cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A0A0L3I0|A0A0A0L3I0_CUCSA7.0e-4195.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1[more]
tr|A0A0B0PN89|A0A0B0PN89_GOSAR3.3e-3583.15Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu... [more]
tr|A0A0D2NVS1|A0A0D2NVS1_GOSRA3.3e-3583.15Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G034000 PE=3 ... [more]
tr|A0A2P5R238|A0A2P5R238_GOSBA5.7e-3583.15Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22201 PE=3 SV... [more]
Match NameE-valueIdentityDescription
sp|Q9T070|COX6A_ARATH7.0e-2869.66Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G... [more]
Match NameE-valueIdentityDescription
AT4G37830.13.9e-2969.66cytochrome c oxidase-related[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005751mitochondrial respiratory chain complex IV
GO:0005743mitochondrial inner membrane
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf
IPR001349Cyt_c_oxidase_su6a
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0015992 proton transport
biological_process GO:0016123 xanthophyll biosynthetic process
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005751 mitochondrial respiratory chain complex IV
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0070330 aromatase activity
molecular_function GO:0010291 carotene beta-ring hydroxylase activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G191520.1Cla97C10G191520.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001349Cytochrome c oxidase, subunit VIaPFAMPF02046COX6Acoord: 35..88
e-value: 9.7E-6
score: 25.9
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 9..88
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3DG3DSA:4.10.95.10coord: 29..91
e-value: 9.7E-10
score: 40.4
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILYSSF81411Mitochondrial cytochrome c oxidase subunit VIacoord: 30..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..38
NoneNo IPR availablePANTHERPTHR11504:SF0CYTOCHROME C OXIDASE SUBUNIT 6A-LIKE-RELATEDcoord: 9..88