Cucsa.260150 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.260150
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	cytochrome c oxidase-related
Location	scaffold02229 : 6438649 .. 6443478 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGACTCGGCAATTTGTGAGAGAGAGAACCAAAGACAAAATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTAAGTCTCTCTCTCTCTCTCTTAGGTtATTTTTTTTTtAATtGCGATGGTATGTGCACTGCAACTGGTTCACGTCTCTCTCTATTTGCTTGTCTTTATTGACGGATTTTTTTtCTTGTTACTTTCAGCAACTTTTCTTAGTCCATTATATGTTTTAATTTTATTCATTTTCCTGCCCTGTTTTCATCTGACGAAATGGGGGAAAGAAGGACGACGTTGATTATTGAATCATGTTCAAAATTTTGTTCCAAAATAATTTGATTCGATGTTTTTCGTTCCTTTtAGATTGATAGTCTTGCCTTGCAAAAGGAGGTGTTTTGAAATTTGAACACAGATTTAAATGTTATTCAATAGTTTTTTAAAATAATCGAATGGGATTATATACATTATATTTGACAATTAACTGTGGATGGGGTTTCCAGCCGCTAAGAAGTAGATTTGGTTTAAAGCTTAGGAAAGAAGATGGCAAAGGGGAATGATCTATTACTGAGTGGCAACACTATAATTGAATAAAAAATGCTCTAGAAAGTCTTGTATTTTGTGGTAGATTTAATTTACCTCTGATTTCGAGTAAGGCACGGTGGAAGGGAAACACAAATGCATCTAATTTATTAGAGTGTTAAGACCTTTAGTCAATGAACTCTTCTCCAGGTTGAAGTTAGTGAAGGTTTTTCACCTCTAATCTGATGCTTCTTTTTTGATTAATTCTTTTCGGGAATGGAGGTCATGGAAGTTTTTCCGCTTCTAATCATATATCTGTTTCTTCTTTCTCTCACTCCTCCCCACATTTtCTCTCTCACACGTTtAtCGgTtgTGGGGGGGGGGGGGgATTTCTTCTTTTTTtGGAGTAGGTAAGTACACTGCTGGTGCTAAGCTGTTTCAGTGTTGTGAATGTATTTTCTAGTAATTCACCAGAACATATACTTTTGATGCCTCGTTACATTTGTTGGGTCATGGTTGCATATGTTTTGTTAGTTTTAAATACTATTTCATTCTTATATTGTTCAAGCACGTAGGAAGAAAAAaTTGAGTGCAAGAGTGCTATGACGCTTGTACTCCTTATGTTTGATCTCTCACCTTCCTTTTCTTATGTCAGGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGTAAGCTATAACTTCAGTCAATTTATACTTTTTCCTCAAGTGCTGAGTACCTTAGTAGAATTGTGGAATTATGTATTGTACTCTCACGTGTTAACCATTTATTTTTGTTTGGGTTTTCACTGTATGCAGGCATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTAAGTTTCCGCTTCATTAGAAGTTATATGACATCTTGCATATCTCTTTGCAATTGCTATTTGGGTTTTATAACATATTTTAAGTCAAAATGTATAATTTCCATGAAGTGGTGGATTTTTTTtATTTGATTTTGGTGCTAGTTGTTTCCTTAAAATGAACTAGTAAAGCATTGTTCTTATGAATTTAAATTTAGATGTAATGCAGAGTTTCCAATAAAACAGTGATTATGCTCCTTTGCAAACTCAGTAATAATTATTTGTGTGTTTTCTTTATTTGGATTGGACATTGTTCATTGTAATCAGAAAGAAAAGTTGATTACCAGTCCTTATTTTCTCTGTTTACGTTGTTTGATCACAATATTAGTAAAATAGTGTTGGAATCTGGAAGCTGAATGTAAGGCCCCCTATCATCCACACGTATAAGAGGAGGGGTAAGAAGGTAAATGCACAGGCAAGTAATGGTGATGAATAATTTGATAGTGATCATGCAAGTGGGGCCCATGGGAAGGAAAGATAGGGAGTGCTATATATAGGTCTTTATTGGGATCAGGTAGCTAGGTCAATTTTTATTCCATCTTTCGGGTGTAAAGGCTGCTGTATGCTGAAGGTTTCTCCAGCTCATTGCGAGGGAGCTGGGTTTTCTTTATTATTACATTGTGACTGTTGTTAACCTTGTTGGCTTATATTTGTCTATAATCAGCAAAGTGCTGCCTCTGTTTATAGCCTTTTGGTTGGGATATCTTTGTTGTTCTCGTTAGTAACCTAACAACAAACCATCCTAATAGTTTGCCAAGTAAATGTACAGCTATTATGTAACCAATAGATTTACTACTAACTCAGCAGCTAGTAACTAATATGCTCGTAAGTACCTTGTTCAGCTTGCTAGCAATCTTTAGACCTAGTTTATTACCTTTTTCATTAATCCAACTCTCATTTAACTTTGAAACTCTTCAACCCCAAATGTCAAATGGGGTATTTCAACGGCTTCCTCTTTTGGTTGCTTGATCATCTCAGGGTTTTATGGATACTTCCTAGTTCCTGGTATAGAACTGTTTATTATTATTGTTGTTGTTGTTGTTGTTGTTTATTTTAGATTTTTAGGACAAGAAACAAGTATGTATTACCCATTAACAAAAGAGACAGCCGGGCAGGGAGTTGAGGGCCTACAAAACTAATGAAGAAGAGTCTTCCAATTGTTAATAATCATAAGAAGGCTATAATTTCCAAAAAAAAAAAaTGGTGTAATTTATGCACCACCAAGAGTTTGTATGCTGGATAAAGACCAGAAAGAATCAAGAGAAGCAAATTTATCTTCAAACTTCTTGCTATTTCTTTCTTTTCGTAGACCCAAGAAGAGCATGAGTATCACATCTTCAACTGATTTTGCCCACCCACAAAATCTACCACCCTCCAACTCGTTCATCATCCAATCATCAATCATCTTGGGAAGGCTTCCTACCGCCCCAAATATTTAGAAAAGTGAAGAACACGCTTTTTAGCAACAAACTCTCAATATAAAAACTGAAAACAAGTGATACACCATGTCCACCTCTATAAGGCAAGATAGCACATGGAAGGAGAAAGAGACCAACTATAGAACTTCCTTTGGGGCTTCTCATGGGTATTCAAGCTTCTAAAACCAGTGACTAGAGGAACCTTCTGTCCCTAGGATCCCTCTCCACTCCCCTAAACACCCTACTGTTTTGCTTACCCCACAGAACTTCTGAGATCACAAATAGTATGTGATAATAGTATGTGTTTGAGTAAACTATCTAAGTTTGAGAAGAAAATAGTAAACACTATAGCAAAGAATAAAAAAATGATAATGTAAAACATAAAAACTTGTAGCAGTCAGCAGATAGTAAATACTATAGCAAATAGGGGTTTTGAAATAGTGTTGATGGTAGTTAATTGGAGACTAGAAGATAGCGTTTACTGGTGGTTATTATAATCTTAAATAGTTCTTCCTCCAAACAACCCCAAAGAGGTTATCCACTGTTCTAGCTTTCGAATAAGTTCTAGCCACAAAGAAGTAGTTGATAATTGGGAACTTTCTTTACTCTTTTCATAGAACTCTAAAAAATGATCTTGTAAAGGGGAGTCACCAAACTAATAGGCTGTATGCACAACTCTAGCTGCCTTCTTCTTCTTTTGTCTTTTCTCGTACAAGTCTTTTTTCCGTTGCTTGTTGACCGGTCTTCCCTAAAGAGTCGGTCTCTTTCGACAATTGATTCCGAAGAAAGTGAAGGTTTTTCTTTTCAAGTCTTACAAGGTTGCGCTAACACGATGGATTGGCTTGTGAAGAACTTGCCCTTACTTGGTTTGTTTTGCGGTATTCTTTGTTGGAAGGTGAAGGAAGACTTGGATCATATTCTCTGGCGTTGTAAGTTATTCAGAGCTATGTGGGGTTACTCTATTAGACGATTGGGTTCTTGCATGCTCGACATAGGGTTACTAATGATATGACTTGGCAAGTTTCTCCTCCATTTTGCCTTTTTTGGAAGGAGGGGATGCTCTTTACGAATGGCCAGGGTGTGGTATTCTTTGGGTTTTGTAGGGGAATAAAATAGCACGATGTTGAGGGACTATTTTGATGTTTGGTCCTTTGTTTTAGTTATACCACATTTTGCTTTGGGTTTCAGTTTCAAAGACCTTTTGTAACTATTCTATTGATTCTAGTTTGCATAATTGAAGTcTCGTTCTTTTGGAAGTTGTTCTTAAACTTTTTTTGGGGAACTGTTACTAACAGTTGCTTTCCTCATTTATGAAAAATGGCTGAATTTGATGGATGATCTGATATTCATTCTCATCTTTCCTCTATGTTCCTTACTCAATTGCTCGTTCACTGTTTACTATCCATTGTGAAAATAATATTGTTTTTACTGATTTAAAAAATAATATATGTATTCCTTGTGCATCAGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTGAGAATTACTCTTGGGTTCAAAAAGCGGATCAGAGTTCTCATTCCTGTTCCATATCAGAAAGACTTCATGGACTGGTTGGTTTAGATTTTTTtCTCTGCAAAGGAAAAGCCATGGCATGGCCATTTTGCATTTGTTTAAATGCTATCAGAATATTATGTGAATCGTTTAATTTTTTtCTGTCACAGCCATCCTTCCTGATTAATAAGATAAACTTTCTTTCCATTGTCCTGAAAGGTTTGCAGTAAGGTGTGCTTGGATTGAAAAATGAGCTTGTATAACTACCGGTACTTAATGGGTAATAATTATTACTTGGGTGAACTACAACAATTACTACGTTTTATCAACACA

mRNA sequence

GTGGACTCGGCAATTTGTGAGAGAGAGAACCAAAGACAAAATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTGAGAATTACTCTTGGGTTCAAAAAGCGGATCAGAGTTCTCATTCCTGTTCCATATCAGAAAGACTTCATGGACTGGTTGGTTTAGATTTTTTTCTCTGCAAAGGAAAAGCCATGGCATGGCCATTTTGCATTTGTTTAAATGCTATCAGAATATTATGTGAATCGTTTAATTTTTTTCTGTCACAGCCATCCTTCCTGATTAATAAGATAAACTTTCTTTCCATTGTCCTGAAAGGTTTGCAGTAAGGTGTGCTTGGATTGAAAAATGAGCTTGTATAACTACCGGTACTTAATGGGTAATAATTATTACTTGGGTGAACTACAACAATTACTACGTTTTATCAACACA

Coding sequence (CDS)

ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTGA

Protein sequence

MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH*

Homology

[Close]

BLAST of Cucsa.260150 vs. Swiss-Prot
Match: COX6A_ARATH (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.9e-34
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP+MHIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]

BLAST of Cucsa.260150 vs. TrEMBL
Match: A0A0A0L3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.0e-50
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 3  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 62
          MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 96

[Close]

BLAST of Cucsa.260150 vs. TrEMBL
Match: A0A059AMS2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00649 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-41
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA +RS LLR++LRG +R S  PKR FASSAHDDA ETAKWEKITYAGIVTC+ILA Y
Sbjct: 1  MAMAMVRSALLRSSLRGGARPSSVPKRNFASSAHDDAHETAKWEKITYAGIVTCTILAIY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEP AYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPAAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Cucsa.260150 vs. TrEMBL
Match: A0A0D2NVS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G034000 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.8e-41
Identity = 80/99 (80.81%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAH-DDARETAKWEKITYAGIVTCSILAF 60
          MAMAS+RS LLRAALRG SR +  PKRGFASS+H DDA ETAKWEKITY G+ TC++LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFETKEH 99

[Close]

BLAST of Cucsa.260150 vs. TrEMBL
Match: A0A0B0PN89_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13220 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.5e-41
Identity = 80/99 (80.81%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAH-DDARETAKWEKITYAGIVTCSILAF 60
          MAMAS+RS LLRAALRG SR +  PKRGFASS+H DDA ETAKWEKITY G+ TC++LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFERKEH 99

[Close]

BLAST of Cucsa.260150 vs. TrEMBL
Match: A0A0B0PEW8_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum GN=F383_28800 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-40
Identity = 80/99 (80.81%), Postives = 86/99 (86.87%), Query Frame = 1


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MAMAS+RS LLR ALRG SR    PKRGF+SS  HDDA ETAKWEKITY GI+TC+ LAF
Sbjct: 1  MAMASVRSGLLRTALRGGSRPPAPPKRGFSSSPNHDDAYETAKWEKITYLGILTCTGLAF 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPH+EEPP YPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 YNLSKGHPHYEEPPPYPYLHIRNKEFPWGPDGLFEVKHH 99

[Close]

BLAST of Cucsa.260150 vs. TAIR10
Match: AT4G37830.1 (AT4G37830.1 cytochrome c oxidase-related)

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-35
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP+MHIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]

BLAST of Cucsa.260150 vs. NCBI nr
Match: gi|778676558|ref|XP_011650608.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.6e-51
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Cucsa.260150 vs. NCBI nr
Match: gi|659098495|ref|XP_008450167.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 1.7e-50
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 1


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Cucsa.260150 vs. NCBI nr
Match: gi|700201190|gb|KGN56323.1| (hypothetical protein Csa_3G115610 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 2.9e-50
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 3  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 62
          MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 96

[Close]

BLAST of Cucsa.260150 vs. NCBI nr
Match: gi|778676556|ref|XP_011650607.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.8e-45
Identity = 98/141 (69.50%), Postives = 98/141 (69.50%), Query Frame = 1


Query: 1   MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
           MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1   MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61  NLSKGHPHHEEPP-------------------------------------------AYPY 99
           NLSKGHPHHEEPP                                           AYPY
Sbjct: 61  NLSKGHPHHEEPPVSYNFSQFILFPQVLSTLVELWNYVLYSHVLTIYFCLGFHCMQAYPY 120

[Close]

BLAST of Cucsa.260150 vs. NCBI nr
Match: gi|702460738|ref|XP_010028042.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Eucalyptus grandis])

HSP 1 Score: 176.8 bits (447), Expect = 1.9e-41
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA +RS LLR++LRG +R S  PKR FASSAHDDA ETAKWEKITYAGIVTC+ILA Y
Sbjct: 1  MAMAMVRSALLRSSLRGGARPSSVPKRNFASSAHDDAHETAKWEKITYAGIVTCTILAIY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEP AYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPAAYPYLHIRNKEFPWGPDGLFEVKHH 98

The following BLAST results are available for this feature:

BLAST of Cucsa.260150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COX6A_ARATH	2.9e-34	70.71	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A ...	[more]

BLAST of Cucsa.260150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3I0_CUCSA	2.0e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115610 PE=3 SV=1	[more]
A0A059AMS2_EUCGR	1.3e-41	82.65	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00649 PE=3 SV=1	[more]
A0A0D2NVS1_GOSRA	3.8e-41	80.81	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G034000 PE=3 SV=1	[more]
A0A0B0PN89_GOSAR	8.5e-41	80.81	Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu...	[more]
A0A0B0PEW8_GOSAR	4.2e-40	80.81	Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu...	[more]

BLAST of Cucsa.260150 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37830.1	1.6e-35	70.71	cytochrome c oxidase-related	[more]

BLAST of Cucsa.260150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676558\|ref\|XP_011650608.1\|	2.6e-51	100.00	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sa...	[more]
gi\|659098495\|ref\|XP_008450167.1\|	1.7e-50	97.96	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo]	[more]
gi\|700201190\|gb\|KGN56323.1\|	2.9e-50	100.00	hypothetical protein Csa_3G115610 [Cucumis sativus]	[more]
gi\|778676556\|ref\|XP_011650607.1\|	4.8e-45	69.50	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X1 [Cucumis sa...	[more]
gi\|702460738\|ref\|XP_010028042.1\|	1.9e-41	82.65	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001349	Cyt_c_oxidase_su6a

Vocabulary: **Molecular Function**
Term	Definition
GO:0004129	cytochrome-c oxidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005743	mitochondrial inner membrane
GO:0005751	mitochondrial respiratory chain complex IV

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0015992	proton transport
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.260150.1	Cucsa.260150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001349	Cytochrome c oxidase, subunit VIa	GENE3D	G3DSA:4.10.95.10		coord: 31..93 score: 2.3
IPR001349	Cytochrome c oxidase, subunit VIa	PIR	PIRSF000277	COX_VIa	coord: 1..98 score: 2.6
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..98 score: 7.0
IPR001349	Cytochrome c oxidase, subunit VIa	PFAM	PF02046	COX6A	coord: 35..88 score: 1.
IPR001349	Cytochrome c oxidase, subunit VIa	unknown	SSF81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..97 score: 2.22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.260150	Csa3G115610	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.260150	MELO3C014946	Melon (DHL92) v3.5.1	cgymeB437
Cucsa.260150	ClCG10G008050	Watermelon (Charleston Gray)	cgywcgB444
Cucsa.260150	CSPI03G06960	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.260150	CmaCh04G008500	Cucurbita maxima (Rimu)	cgycmaB0721
Cucsa.260150	CmaCh16G007350	Cucurbita maxima (Rimu)	cgycmaB0712
Cucsa.260150	CmoCh04G009100	Cucurbita moschata (Rifu)	cgycmoB0715
Cucsa.260150	Lsi05G008050	Bottle gourd (USVL1VR-Ls)	cgylsiB421
Cucsa.260150	Cp4.1LG01g09060	Cucurbita pepo (Zucchini)	cgycpeB0680
Cucsa.260150	Cp4.1LG14g00910	Cucurbita pepo (Zucchini)	cgycpeB0674
Cucsa.260150	MELO3C014946.2	Melon (DHL92) v3.6.1	cgymedB434
Cucsa.260150	CsaV3_3G007040	Cucumber (Chinese Long) v3	cgycucB387
Cucsa.260150	Cla97C10G191520	Watermelon (97103) v2	cgywmbB448
Cucsa.260150	Bhi11G000745	Wax gourd	cgywgoB503
Cucsa.260150	Carg14249	Silver-seed gourd	carcgyB1061
Cucsa.260150	Carg05850	Silver-seed gourd	carcgyB1136

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.260150	Cucurbita moschata (Rifu)	cgycmoB0705
Cucsa.260150	Watermelon (Charleston Gray)	cgywcgB443
Cucsa.260150	Watermelon (97103) v2	cgywmbB447