Cp4.1LG01g09060 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g09060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptioncytochrome c oxidase-related
LocationCp4.1LG01 : 4521386 .. 4524027 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAGATCACACGTTTGGGGAAGTTTTGGTGAAAGGGCTCTCGATCGAAATTGCAAGGGTATGGTCATTTCAATTATAACTCGGGCATTGGCGATTTGTTAGAGAAAGAGAGAGTCAAAAGAGAATGTCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTTCGTCCTCTGCTCACGACGATGCTCGTAAGTCTCTCTCTCGGTATTTCTGGATATGTTTTTTTTTCTTTATTGACGGAATTTTTCTTGTTACTTTTGGCAACTTCGTTTAGCCCATTCATTTTCCTGGCCTATTTTTATGATGAAATTGGGGAAACTAGGTGATGTTAATTATTGAATCGTGTTCAGAAATTTGGACCAAGATAATTTGGTCGGGCGCTCTTTGTTCCTTTTAGATTGCAAGTCTTGCAAGGGGAGGTTTTTTTAAAAAAAACTTCAAATTCAGATTTAAATGTTATTATTCAATAGTTTTGTTAAATCATAGAATGGGATGGGAGTATATACATGACATATTTGACAATTAACTGTAGATAGGGTTTCCAGTCGCTAAAGGAGTAGTTTCGATTTAAAGTTCGTGGTAAGGAAAAAGACAAGAGGCGCACAAGCTTCCTGTTCCATTACTGAGTGGCAACAATATCATTCTTGATATCTGTAATTACATAAAAATGCTTTCTAAAGTCTTAGATGTGGCTTGTGGTAGGTTCAGTTTCCTTTTGATTTCACATAAATAAGACATGAAGGAAAGGGAATATGCAGTAAGTTTATTAGACGGTTTAGGGCTTTAGTTAAAAAAAATTCTCCTCTGGGAAGTTTATACACCTCTAATCCTACGCCTGCCTCTTATTTCTTTATTTCCCCCATTTTTTCTTTCTTTCTTTTCCTCACACAATTCTGGGTTGCGAGTAAGGGAACGAACATTATTCTGTGTTTTGAGGTGATTTCAGTAAATTGTTGGAGCTAAACCAATCTGTGCTGTGAATTTATTTTATATTGATCCACCATAACATATACTCGATGGTGGCCTTTACTTAGTTGGGTACAAATTATGTATTGTTATTTTTAAATACTATTTCAGACTTATAGTGTACAAGCAAGTGGGAGAGAAAAATTTTATGCAGGAGCGCAATGATGCTTGTACTGCCTATGCTTTATCTCTCATACAAATTTTCTTTCTTTATTTCAGTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGTGAGCTACAACTTTAGTCAATTTATAATTTTCCTACCACTTCTCAATATCCTAGTTGCATTATTCATTGTACTCTCATGTGTGGCCAATTCATTTTTGTTTGGGTTTTTATTGTATGCAGGCATACCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTGCCATTGCATTACAAGTTCTATGACATCTTTTATATCTCTTGGCAGTCGCAATTTGGGTTTTGATGAGGTAACTAGAACTGGATGCTGCAGTGATGTCATATAGTATATATTTACTGGATGCCAAGCAAACTTACATCTACCTTGTAACTAATATATTTACTGCTAACTTGGCAGCTAGCAACTAATATGCTCATAAATACCTCGTTCAGCTTGCTAACAGTTTTTAGTCCTATTATATAACCTTGTCCTTTCATTAACCCAACTCTCACTACTTTTAAATGCTCCATGGTCAAATTTCTAATGGTAGTTCAACAGCTTCCTCTTTCTGTTGGTCGATCATCTCAATGGTCTATGGATACTTCTGGGATAAAAGTGTTTGTAAGCTGTTTCCAAGAAGTAAACATTTTAGAATAAAAGTTATATGTTTTTGTAACTGTTTTCGACAGTTGCTTCTCTCAGTATATTTTAGAAGAACTGCAGTTGAAATGTTAAAATCTTTACAAACGAAAAAGTCATAGCATCATCGTAGGAAAAAGAGCTGGTGATGATGTACCACGGCATTTTTCAGAACTGGTTGAATTTGATCGATGATCTTATATTCGTTCATCTTTGCTCTCTGCTCGTTGCTCATTTGCTCCTTTTCTGTTTATTATTTATTGTGAAAATAATATTGTTTTATTTTCAATCCCTTTTGCATCAGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGAGGACTATTTTGGTTCAAGGGGACATCGAGCATGGTAATTCTACTTCTCATTTGGTTCATATCAGAAAGACTTCGTTGACCCGTTTGGTTGGATTTTTCTTTTTAATGATGCGTGGGCCATTTTGCATTTGTTAAATGCTAGCAGGGTCCTATGTGAATGAATCATGGTTTAATTTCTTGTGTTGTCAAGACTATCCTTCCTGATTAATAAGCCAAACTTTCCACCATTCTAAGGTTCAGTTTGCATTATGCTGTGTTTGGATTGAAATGTGAGTTTGTAAGTAATAATAGTATTTGAGGTGGTGATGTTTACTTGGTAAACTGAAGCAGTTGTTTGGTTTATCAACAAAGATGGAATAGGAACTTCGATTTATAAATATTAACGATACATTTTTAT

mRNA sequence

CGAGATCACACGTTTGGGGAAGTTTTGGTGAAAGGGCTCTCGATCGAAATTGCAAGGGTATGGTCATTTCAATTATAACTCGGGCATTGGCGATTTGTTAGAGAAAGAGAGAGTCAAAAGAGAATGTCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTTCGTCCTCTGCTCACGACGATGCTCTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATACCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGAGGACTATTTTGGTTCAAGGGGACATCGAGCATGGTAATTCTACTTCTCATTTGGTTCATATCAGAAAGACTTCGTTGACCCGTTTGGTTGGATTTTTCTTTTTAATGATGCGTGGGCCATTTTGCATTTGTTAAATGCTAGCAGGGTCCTATGTGAATGAATCATGGTTTAATTTCTTGTGTTGTCAAGACTATCCTTCCTGATTAATAAGCCAAACTTTCCACCATTCTAAGGTTCAGTTTGCATTATGCTGTGTTTGGATTGAAATGTGAGTTTGTAAGTAATAATAGTATTTGAGGTGGTGATGTTTACTTGGTAAACTGAAGCAGTTGTTTGGTTTATCAACAAAGATGGAATAGGAACTTCGATTTATAAATATTAACGATACATTTTTAT

Coding sequence (CDS)

ATGTCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTTCGTCCTCTGCTCACGACGATGCTCTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATACCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGA

Protein sequence

MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Homology
[Close]
BLAST of Cp4.1LG01g09060 vs. Swiss-Prot
Match: COX6A_ARATH (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-33
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 1 

Query: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSA-HDDALETAKWEKITYAGIAACTTLAF 60
          M+ A +RS L RA  R A + S  PKR FSSSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]
BLAST of Cp4.1LG01g09060 vs. TrEMBL
Match: A0A0A0L3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-44
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 1 

Query: 3  MATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFYNL 62
          MA+IRSNLLRAA RGASRNS QPKRGF+SSAHDDA ETAKWEKITYAGI  C+ LAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          SKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 96

[Close]
BLAST of Cp4.1LG01g09060 vs. TrEMBL
Match: A0A0D2NVS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G034000 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.7e-39
Identity = 79/99 (79.80%), Postives = 86/99 (86.87%), Query Frame = 1 

Query: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAH-DDALETAKWEKITYAGIAACTTLAF 60
          M+MA++RS LLRAA RG SR +A PKRGF+SS+H DDA ETAKWEKITY G+A CT LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFETKEH 99

[Close]
BLAST of Cp4.1LG01g09060 vs. TrEMBL
Match: A0A0B0PN89_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13220 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.0e-39
Identity = 79/99 (79.80%), Postives = 86/99 (86.87%), Query Frame = 1 

Query: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAH-DDALETAKWEKITYAGIAACTTLAF 60
          M+MA++RS LLRAA RG SR +A PKRGF+SS+H DDA ETAKWEKITY G+A CT LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFERKEH 99

[Close]
BLAST of Cp4.1LG01g09060 vs. TrEMBL
Match: A0A0B0PEW8_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum GN=F383_28800 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.9e-39
Identity = 80/99 (80.81%), Postives = 84/99 (84.85%), Query Frame = 1 

Query: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSA-HDDALETAKWEKITYAGIAACTTLAF 60
          M+MA++RS LLR A RG SR  A PKRGFSSS  HDDA ETAKWEKITY GI  CT LAF
Sbjct: 1  MAMASVRSGLLRTALRGGSRPPAPPKRGFSSSPNHDDAYETAKWEKITYLGILTCTGLAF 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPH+EEPP YPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 YNLSKGHPHYEEPPPYPYLHIRNKEFPWGPDGLFEVKHH 99

[Close]
BLAST of Cp4.1LG01g09060 vs. TrEMBL
Match: A0A059AMS2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00649 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.3e-38
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 1 

Query: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFY 60
          M+MA +RS LLR++ RG +R S+ PKR F+SSAHDDA ETAKWEKITYAGI  CT LA Y
Sbjct: 1  MAMAMVRSALLRSSLRGGARPSSVPKRNFASSAHDDAHETAKWEKITYAGIVTCTILAIY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEP AYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPAAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of Cp4.1LG01g09060 vs. TAIR10
Match: AT4G37830.1 (AT4G37830.1 cytochrome c oxidase-related)

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-34
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 1 

Query: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSA-HDDALETAKWEKITYAGIAACTTLAF 60
          M+ A +RS L RA  R A + S  PKR FSSSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]
BLAST of Cp4.1LG01g09060 vs. NCBI nr
Match: gi|778676558|ref|XP_011650608.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.7e-45
Identity = 87/98 (88.78%), Postives = 92/98 (93.88%), Query Frame = 1 

Query: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFY 60
          M+MA+IRSNLLRAA RGASRNS QPKRGF+SSAHDDA ETAKWEKITYAGI  C+ LAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of Cp4.1LG01g09060 vs. NCBI nr
Match: gi|659098495|ref|XP_008450167.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 8.1e-45
Identity = 87/98 (88.78%), Postives = 91/98 (92.86%), Query Frame = 1 

Query: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFY 60
          M+MA+IRSN LRAA RGASRNS QPKRGF+SSAHDDA ETAKWEKITYAGI  C+ LAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of Cp4.1LG01g09060 vs. NCBI nr
Match: gi|700201190|gb|KGN56323.1| (hypothetical protein Csa_3G115610 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-44
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 1 

Query: 3  MATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFYNL 62
          MA+IRSNLLRAA RGASRNS QPKRGF+SSAHDDA ETAKWEKITYAGI  C+ LAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          SKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 96

[Close]
BLAST of Cp4.1LG01g09060 vs. NCBI nr
Match: gi|823139668|ref|XP_012469699.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial-like [Gossypium raimondii])

HSP 1 Score: 169.1 bits (427), Expect = 3.9e-39
Identity = 79/99 (79.80%), Postives = 86/99 (86.87%), Query Frame = 1 

Query: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAH-DDALETAKWEKITYAGIAACTTLAF 60
          M+MA++RS LLRAA RG SR +A PKRGF+SS+H DDA ETAKWEKITY G+A CT LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFETKEH 99

[Close]
BLAST of Cp4.1LG01g09060 vs. NCBI nr
Match: gi|778676556|ref|XP_011650607.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 8.6e-39
Identity = 87/141 (61.70%), Postives = 92/141 (65.25%), Query Frame = 1 

Query: 1   MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFY 60
           M+MA+IRSNLLRAA RGASRNS QPKRGF+SSAHDDA ETAKWEKITYAGI  C+ LAFY
Sbjct: 1   MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61  NLSKGHPHHEEPP-------------------------------------------AYPY 99
           NLSKGHPHHEEPP                                           AYPY
Sbjct: 61  NLSKGHPHHEEPPVSYNFSQFILFPQVLSTLVELWNYVLYSHVLTIYFCLGFHCMQAYPY 120

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g09060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COX6A_ARATH1.9e-3370.71Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A ... [more]
BLAST of Cp4.1LG01g09060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3I0_CUCSA1.3e-4489.58Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115610 PE=3 SV=1[more]
A0A0D2NVS1_GOSRA2.7e-3979.80Uncharacterized protein OS=Gossypium raimondii GN=B456_003G034000 PE=3 SV=1[more]
A0A0B0PN89_GOSAR6.0e-3979.80Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu... [more]
A0A0B0PEW8_GOSAR7.9e-3980.81Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu... [more]
A0A059AMS2_EUCGR2.3e-3878.57Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00649 PE=3 SV=1[more]
BLAST of Cp4.1LG01g09060 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37830.11.0e-3470.71 cytochrome c oxidase-related[more]
BLAST of Cp4.1LG01g09060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778676558|ref|XP_011650608.1|4.7e-4588.78PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sa... [more]
gi|659098495|ref|XP_008450167.1|8.1e-4588.78PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo][more]
gi|700201190|gb|KGN56323.1|1.8e-4489.58hypothetical protein Csa_3G115610 [Cucumis sativus][more]
gi|823139668|ref|XP_012469699.1|3.9e-3979.80PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial-like [Gossypium raimon... [more]
gi|778676556|ref|XP_011650607.1|8.6e-3961.70PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X1 [Cucumis sa... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005751mitochondrial respiratory chain complex IV
GO:0005743mitochondrial inner membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
Vocabulary: INTERPRO
TermDefinition
IPR001349Cyt_c_oxidase_su6a
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0015992 proton transport
biological_process GO:0016123 xanthophyll biosynthetic process
biological_process GO:0022900 electron transport chain
cellular_component GO:0005751 mitochondrial respiratory chain complex IV
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0070330 aromatase activity
molecular_function GO:0010291 carotene beta-ring hydroxylase activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g09060.1Cp4.1LG01g09060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001349Cytochrome c oxidase, subunit VIaGENE3DG3DSA:4.10.95.10coord: 31..93
score: 4.8
IPR001349Cytochrome c oxidase, subunit VIaPIRPIRSF000277COX_VIacoord: 1..98
score: 1.9
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 1..98
score: 1.2
IPR001349Cytochrome c oxidase, subunit VIaunknownSSF81411Mitochondrial cytochrome c oxidase subunit VIacoord: 30..97
score: 1.44

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g09060Cucsa.260150Cucumber (Gy14) v1cgycpeB0680
Cp4.1LG01g09060CmaCh16G007350Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g09060CmaCh04G008500Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g09060CmoCh16G007950Cucurbita moschata (Rifu)cmocpeB312
Cp4.1LG01g09060CmoCh04G009100Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g09060Csa3G115610Cucumber (Chinese Long) v2cpecuB393
Cp4.1LG01g09060MELO3C014946Melon (DHL92) v3.5.1cpemeB409
Cp4.1LG01g09060ClCG10G008050Watermelon (Charleston Gray)cpewcgB348
Cp4.1LG01g09060CSPI03G06960Wild cucumber (PI 183967)cpecpiB392
Cp4.1LG01g09060Lsi05G008050Bottle gourd (USVL1VR-Ls)cpelsiB370
Cp4.1LG01g09060MELO3C014946.2Melon (DHL92) v3.6.1cpemedB485
Cp4.1LG01g09060CsaV3_3G007040Cucumber (Chinese Long) v3cpecucB0491
Cp4.1LG01g09060Bhi11G000745Wax gourdcpewgoB0478
Cp4.1LG01g09060CsGy3G007080Cucumber (Gy14) v2cgybcpeB369
Cp4.1LG01g09060Carg05850Silver-seed gourdcarcpeB1417
Cp4.1LG01g09060Carg14249Silver-seed gourdcarcpeB1302
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g09060Cp4.1LG14g00910Cucurbita pepo (Zucchini)cpecpeB233
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g09060Silver-seed gourdcarcpeB0562
Cp4.1LG01g09060Wax gourdcpewgoB0486
Cp4.1LG01g09060Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG01g09060Cucurbita pepo (Zucchini)cpecpeB385
Cp4.1LG01g09060Cucumber (Gy14) v1cgycpeB0219
Cp4.1LG01g09060Cucurbita maxima (Rimu)cmacpeB876
Cp4.1LG01g09060Cucurbita moschata (Rifu)cmocpeB613
Cp4.1LG01g09060Cucurbita moschata (Rifu)cmocpeB813
Cp4.1LG01g09060Bottle gourd (USVL1VR-Ls)cpelsiB326
Cp4.1LG01g09060Watermelon (Charleston Gray)cpewcgB349
Cp4.1LG01g09060Watermelon (Charleston Gray)cpewcgB374
Cp4.1LG01g09060Melon (DHL92) v3.5.1cpemeB434
Cp4.1LG01g09060Cucumber (Gy14) v2cgybcpeB808
Cp4.1LG01g09060Melon (DHL92) v3.6.1cpemedB509