CmaCh16G007350 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G007350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cytochrome c oxidase subunit 6a, mitochondrial-like protein
Location	Cma_Chr16 : 3873806 .. 3876893 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTACACGCTTGGGATTATTCTAGCGAAAGAGTTTCAATCTAAAATGCAAGGGTTTGGTTATTACAATCATCTCGGTAATTTGTGTGAGAGAGTCGGGGAAAATGGCAATGGCGATGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACCCCGCTCAGCCTAAACGCGGCTTCGCTTCCTCTGCCCACGACGATGCTCGTAAGTCTCTTTCTCTCTCTCGGTATTTCGGATTGTGATCGTGTATGCGCTACAAACACGTCTCCCTCAATTTTCTTTTCTTTATTGACGGAATTTTTGCTTGTTGCTTTTGGAAACTTTGTTTAACCCGTTATATGTTTGATTTCATTCATTTGCCTGCGCTATTTTCATCTGACGAAATGGAGGGAAACAAGGATGATGTTGATTATTGAATCATGTTAAGAAATTTAGTCCAAAATGATTTGATCCGATGTTTTTTGTTCCTTTATGATTGGAAGTCTCGCGAAAGGAGGTGTTTTGAAATTTGAATTCTGATTTAAATGTTGTTATTCTTTAGTGTTGTTAAATCATCGAGCGGGAGTATATACATGACACATTTGAGAATTAACGTGGATGAGGTTTCCAGTCGCTAAGAAGTTAATTTGATTTAAAGCTGATGGGAAAGAAGAAAACAAGAGGGGCAAACATATTTCTTGATCCATTACTGAGTGGCAGCAGCATAATTCTTGATTTCTATGATTGCATTAAGAAAAGAAAAGAAAAGACATGAACGAAAGTCTTGGATGTGGCTTGTGGTAGGCTTAATTTAATTCTGATTTCGCATAAATAAGACATGAACGAAAGGAAACGTAAACTCAGTAAATTTATTAGAGGGTTTAGGGCTTTTTAATAAAACAATTCTTCCCCAGGATGAAGGTCGTGGAAGTTTCTCCACCTCTAACCTTACGCCTGCTTTTTTTTTTGTTCTTTTGATAACCGGGAGTCAGAACTGTGCTCCTCTTAGCCAGGCACCCACATCCACCTCAAGGCCCAGACTTAAGGAGACATCAAGGGTTTTTAGTATTATGCTCACCCGAAGGTTCGAACTTGGGACCTCTAAGTTGGTATGACCGAGAGGCCGCAAACCCCTTGCCAATGGGATCATTCCATGTGGGCTTTCCCGCTTCTTTATTTTCTCCCATTTTTTTCTCTCTTTTCTCTCACGTTTCTGGGTGGGGTTGGGGGAGGGGAACAGATATTCTTCTGTTTTTTTGTTTGAGCTAATCTAATTCAGTGTTGTGAATTTATTTTCTAGTAACCCACTGAAACATATACTTGATGGCTCTTTACGTTGTTTGGGTACAATTACTTATTGTTATTTCTAAATACTATTGCAGAAGGAATAACCGTATGCAGGAGTGCAATGATGCTTGTGCTCCCTATATTTTATCTCTCACACAAACTTTCTTTCTTTATGTCAGGTGAAACGGCAAAGTGGGAGAAAATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGTGAGCTATAGCTTCAGTCAATTTATAATTTTTCCTCCACTTCTCAATATATTGGTTGCATTATGCATTGTTTCTCATTTGTGGCCCATTTTTTTTGGGTTTTCATTGTTTGCAGGCATACCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACGTCATTACTAGTTCTATTACATCTTTTAGATCCCTTTGAAGTTGCAATTTGGGTTTTGAAGAGGAAACTAGAACTGGATACTGCTGTGATGACATGTAGTGTTATTTTCTTCCCATTAAAGATGATGCTATATTATATTATCTTTTCAATTATTTTTAATACTTTCTAGAAATAACGAACTCTATTTTCTACATGCATTTCAATATTCATTTTGTTAAAAAAGAAAGTGCCCAAAATGTATAATTTCTAAGTAGTGGTGGATTTTCTGAGTTGATTTATGGTGCTAGTCGTTTTCTTAAAATAAATTATTGTTTTTATGAATGTAACATTAAACATAATGTAGATTTTACAAATAATTAGTGATTATGCCTCTATGCTTTCCACAGTCCACGTTCATAATTATGGACGTTTTTCTTTGTTTGGATTGGACAGTGTTTATAGTAATCAGAAACAAAAATTCATTAGCAGTCATTATCTCTGTTTACAGCTTACGTTGCTTGAGCATAATGTTGAAAGTTGAACTTAGGCCATTGATAATGTTGGCATCTGGAAGCTGAACCATCTAACTTAGTTTCCCAAGCAAACTTACAGCTATTATGTAACGAATAGATTTGCTACCAACGGCCGCTAGTAACTCATAATTACCTCGTTCAGCTTGCCAACAGTTTTCTGATCTATTTTACAACCTCCTCCTTTCATTTACCGAACCCTCACTTAACTTTGAGCTGCCCCATCGTCAAATATCAAATGGTAGTTCAATGTCTACCACTTTCTGTTGTTGATCATCTCTAGGTTTTCCACTTTTATTTTTTGGTAACTCTGTTTGTACAGTTTCTTCTCTCGTTATATTTTAGAACAACTGCAGTTGAAACTGGTCTTTAAAATCTTTACAAGCAAAAACTTCATAGCATCATTGTAGGAAGTAGACCTAGAGATGTACTGCAGCATTTATCAAAACTGGGTGAATTTGATGGATTTTGCACTCTGTTCGTTTCTCGTCGTCCTTTTGCGTTTATTATTTGTTGTGAAAATAATTGTTTCACTTCAAATAATAATTTATTTTTTTTAATTCTCAACCCTTTGTTTGTTCATCAGGTCCCGATGGTCTCTTTGAAGTGAAGCATCACTAAGGACTTGCTTTGGTTCGAGGGGACATCGAGCATAGGAATTCTACTTCTCACTTTGTTCCATATCAGAAAGACTTCATCGACTGGTTCGGTTGAAATTTTCTTTACTAAGGATGCATGGTCATTTTTCATTTGTTAAAATGCTATCAGGGTCTGATATCTTTTTTGTGTTGTCAAAACTATCCTTCCTGATTAATAAAATTAACTTTCCATCATTCGAAAGCTGA

mRNA sequence

AAGTTACACGCTTGGGATTATTCTAGCGAAAGAGTTTCAATCTAAAATGCAAGGGTTTGGTTATTACAATCATCTCGGTAATTTGTGTGAGAGAGTCGGGGAAAATGGCAATGGCGATGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACCCCGCTCAGCCTAAACGCGGCTTCGCTTCCTCTGCCCACGACGATGCTCGTGAAACGGCAAAGTGGGAGAAAATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGCATACCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAAGAATTCTACTTCTCACTTTGTTCCATATCAGAAAGACTTCATCGACTGGTTCGGTTGAAATTTTCTTTACTAAGGATGCATGGTCATTTTTCATTTGTTAAAATGCTATCAGGGTCTGATATCTTTTTTGTGTTGTCAAAACTATCCTTCCTGATTAATAAAATTAACTTTCCATCATTCGAAAGCTGA

Coding sequence (CDS)

ATGGCAATGGCGATGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACCCCGCTCAGCCTAAACGCGGCTTCGCTTCCTCTGCCCACGACGATGCTCGTGAAACGGCAAAGTGGGAGAAAATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGCATACCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAAGAATTCTACTTCTCACTTTGTTCCATATCAGAAAGACTTCATCGACTGGTTCGGTTGAAATTTTCTTTACTAAGGATGCATGGTCATTTTTCATTTGTTAAAATGCTATCAGGGTCTGATATCTTTTTTGTGTTGTCAAAACTATCCTTCCTGATTAATAAAATTAACTTTCCATCATTCGAAAGCTGA

Protein sequence

MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEEFYFSLCSISERLHRLVRLKFSLLRMHGHFSFVKMLSGSDIFFVLSKLSFLINKINFPSFES

Homology

[Close]

BLAST of CmaCh16G007350 vs. Swiss-Prot
Match: COX6A_ARATH (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-30
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 1


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAF 60
          MA A++RS L RA  R A +    PKR F+SSA HDDA E AKWEKITY GI SC+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFE
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFE 95

[Close]

BLAST of CmaCh16G007350 vs. TrEMBL
Match: A0A0A0L3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.8e-43
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 3  MAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNL 62
          MA IRSNLLRAA RGASRN  QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          SKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFE
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFE 92

[Close]

BLAST of CmaCh16G007350 vs. TrEMBL
Match: A0A059AMS2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00649 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.6e-38
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMAM+RS LLR++ RG +R  + PKR FASSAHDDA ETAKWEKITYAGIV+C+ILA Y
Sbjct: 1  MAMAMVRSALLRSSLRGGARPSSVPKRNFASSAHDDAHETAKWEKITYAGIVTCTILAIY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          NLSKGHPHYEEP AYPYLHIRNKEFPWGPDGLFE
Sbjct: 61 NLSKGHPHYEEPAAYPYLHIRNKEFPWGPDGLFE 94

[Close]

BLAST of CmaCh16G007350 vs. TrEMBL
Match: A0A0D2NVS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G034000 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.3e-37
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAH-DDARETAKWEKITYAGIVSCSILAF 60
          MAMA +RS LLRAA RG SR  A PKRGFASS+H DDA ETAKWEKITY G+ +C++LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          YNLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFE
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE 95

[Close]

BLAST of CmaCh16G007350 vs. TrEMBL
Match: A0A0B0PN89_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13220 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.3e-37
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAH-DDARETAKWEKITYAGIVSCSILAF 60
          MAMA +RS LLRAA RG SR  A PKRGFASS+H DDA ETAKWEKITY G+ +C++LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          YNLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFE
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE 95

[Close]

BLAST of CmaCh16G007350 vs. TrEMBL
Match: A0A0B0PEW8_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum GN=F383_28800 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.3e-37
Identity = 77/95 (81.05%), Postives = 82/95 (86.32%), Query Frame = 1


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAF 60
          MAMA +RS LLR A RG SR PA PKRGF+SS  HDDA ETAKWEKITY GI++C+ LAF
Sbjct: 1  MAMASVRSGLLRTALRGGSRPPAPPKRGFSSSPNHDDAYETAKWEKITYLGILTCTGLAF 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          YNLSKGHPHYEEPP YPYLHIRNKEFPWGPDGLFE
Sbjct: 61 YNLSKGHPHYEEPPPYPYLHIRNKEFPWGPDGLFE 95

[Close]

BLAST of CmaCh16G007350 vs. TAIR10
Match: AT4G37830.1 (AT4G37830.1 cytochrome c oxidase-related)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-31
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 1


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAF 60
          MA A++RS L RA  R A +    PKR F+SSA HDDA E AKWEKITY GI SC+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFE
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFE 95

[Close]

BLAST of CmaCh16G007350 vs. NCBI nr
Match: gi|778676558|ref|XP_011650608.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 6.4e-44
Identity = 87/94 (92.55%), Postives = 90/94 (95.74%), Query Frame = 1


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMA IRSNLLRAA RGASRN  QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          NLSKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFE
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFE 94

[Close]

BLAST of CmaCh16G007350 vs. NCBI nr
Match: gi|659098495|ref|XP_008450167.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-43
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 1


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMA IRSN LRAA RGASRN  QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFE
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE 94

[Close]

BLAST of CmaCh16G007350 vs. NCBI nr
Match: gi|700201190|gb|KGN56323.1| (hypothetical protein Csa_3G115610 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 5.4e-43
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 3  MAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNL 62
          MA IRSNLLRAA RGASRN  QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          SKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFE
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFE 92

[Close]

BLAST of CmaCh16G007350 vs. NCBI nr
Match: gi|702460738|ref|XP_010028042.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Eucalyptus grandis])

HSP 1 Score: 166.0 bits (419), Expect = 5.2e-38
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMAM+RS LLR++ RG +R  + PKR FASSAHDDA ETAKWEKITYAGIV+C+ILA Y
Sbjct: 1  MAMAMVRSALLRSSLRGGARPSSVPKRNFASSAHDDAHETAKWEKITYAGIVTCTILAIY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          NLSKGHPHYEEP AYPYLHIRNKEFPWGPDGLFE
Sbjct: 61 NLSKGHPHYEEPAAYPYLHIRNKEFPWGPDGLFE 94

[Close]

BLAST of CmaCh16G007350 vs. NCBI nr
Match: gi|823139668|ref|XP_012469699.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial-like [Gossypium raimondii])

HSP 1 Score: 162.2 bits (409), Expect = 7.5e-37
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAH-DDARETAKWEKITYAGIVSCSILAF 60
          MAMA +RS LLRAA RG SR  A PKRGFASS+H DDA ETAKWEKITY G+ +C++LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          YNLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFE
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE 95

The following BLAST results are available for this feature:

BLAST of CmaCh16G007350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COX6A_ARATH	2.4e-30	68.42	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A ...	[more]

BLAST of CmaCh16G007350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3I0_CUCSA	3.8e-43	92.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115610 PE=3 SV=1	[more]
A0A059AMS2_EUCGR	3.6e-38	81.91	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00649 PE=3 SV=1	[more]
A0A0D2NVS1_GOSRA	5.3e-37	80.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G034000 PE=3 SV=1	[more]
A0A0B0PN89_GOSAR	5.3e-37	80.00	Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu...	[more]
A0A0B0PEW8_GOSAR	5.3e-37	81.05	Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu...	[more]

BLAST of CmaCh16G007350 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37830.1	1.3e-31	68.42	cytochrome c oxidase-related	[more]

BLAST of CmaCh16G007350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676558\|ref\|XP_011650608.1\|	6.4e-44	92.55	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sa...	[more]
gi\|659098495\|ref\|XP_008450167.1\|	1.1e-43	92.55	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo]	[more]
gi\|700201190\|gb\|KGN56323.1\|	5.4e-43	92.39	hypothetical protein Csa_3G115610 [Cucumis sativus]	[more]
gi\|702460738\|ref\|XP_010028042.1\|	5.2e-38	81.91	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Eucalyptus grandis]	[more]
gi\|823139668\|ref\|XP_012469699.1\|	7.5e-37	80.00	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial-like [Gossypium raimon...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001349	Cyt_c_oxidase_su6a

Vocabulary: **Molecular Function**
Term	Definition
GO:0004129	cytochrome-c oxidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005743	mitochondrial inner membrane
GO:0005751	mitochondrial respiratory chain complex IV

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015992	proton transport
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G007350.1	CmaCh16G007350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001349	Cytochrome c oxidase, subunit VIa	GENE3D	G3DSA:4.10.95.10		coord: 31..92 score: 2.8
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..94 score: 8.0
IPR001349	Cytochrome c oxidase, subunit VIa	unknown	SSF81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..95 score: 3.53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G007350	Cucsa.260150	Cucumber (Gy14) v1	cgycmaB0712
CmaCh16G007350	Csa3G115610	Cucumber (Chinese Long) v2	cmacuB328
CmaCh16G007350	MELO3C014946	Melon (DHL92) v3.5.1	cmameB292
CmaCh16G007350	ClCG10G008050	Watermelon (Charleston Gray)	cmawcgB283
CmaCh16G007350	CSPI03G06960	Wild cucumber (PI 183967)	cmacpiB334
CmaCh16G007350	CmoCh04G009100	Cucurbita moschata (Rifu)	cmacmoB337
CmaCh16G007350	Lsi05G008050	Bottle gourd (USVL1VR-Ls)	cmalsiB315
CmaCh16G007350	Cp4.1LG01g09060	Cucurbita pepo (Zucchini)	cmacpeB350
CmaCh16G007350	Cp4.1LG14g00910	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G007350	MELO3C014946.2	Melon (DHL92) v3.6.1	cmamedB349
CmaCh16G007350	CsaV3_3G007040	Cucumber (Chinese Long) v3	cmacucB0382
CmaCh16G007350	Cla97C10G191520	Watermelon (97103) v2	cmawmbB336
CmaCh16G007350	Bhi11G000745	Wax gourd	cmawgoB0411
CmaCh16G007350	CsGy3G007080	Cucumber (Gy14) v2	cgybcmaB341
CmaCh16G007350	Carg05850	Silver-seed gourd	carcmaB1409
CmaCh16G007350	Carg14249	Silver-seed gourd	carcmaB1286

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G007350	CmaCh04G008500	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G007350	Watermelon (97103) v2	cmawmbB335
CmaCh16G007350	Cucurbita moschata (Rifu)	cmacmoB322