Carg14249 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14249
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cytochrome c oxidase subunit 6a, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_045 : 819442 .. 822007 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGTCATTTCAATTATAACTCGGGCATTGGGGATTTGTTGGAGAAAGAGAGAGTCAAAAGAGAATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGATGCTCGTAAGTCTCTCTCTCGGTATTTCTGGATATGTTTTTTTCTTTATGGACGGAAATTTTCTTGTTACTTTTGGCAACTTCGTTTAGCCCATTCATTTTCCTGGCCTATTTTTATGATGAAATTGGGGAAACTAGGATGATGTTAATTATTGAATCGTTTTCAGAAATTTGGACCAAGATAATTTGGTCGGGCGCTCTTTGTTCCTTTTAGATTGCAAGTCTTGCGAGGGGAGGTTTTTTTTTTTCCCTTAAATTTTAAATTCAGATTTAAATGTTAAATCATAGTATGGGATGGGAGTATATACATGACATATTTGACAATTAACTGTAGATAGGGTTTCCAGTCGCTAAAGGAGTAGTTTTGATTTAAAGTTCGTGGTAAGGAAAAAGACAAGAGGGGCAAAAGCTTCCTGTTCCATTACTGAGTGGCAACAATATCATTCTTGATTTCTGTAATTACATAAAAATTCTTTCTAAAGTCTTAGATGTGGCTTGTGGTAGGTTCAGTTTCCTTTTGATTTCACATAAATACGAAATGAAGGAAAGGGAATATGCAGTAAGTTTATTAGACGGTTTAGGGCTTTAGTTAAAAAAAAATTCTTCTCTGGGAAGTTTATACACCTCTAATCCTACGCCTGCCTCTTATTTCTTTATTTCCCCCATTTTTTCTTTCTTTCTTTTCCCCACACAATTCTGGGTTGCGAGTAAGGGGACGAATATTATTCTGTGTTTTGAGGTGATTTCAGTAAATTGTTGGAGCTAAACCAATCTGTGCTGTGAATTTATTTTATATTGTTCCACCATAACATATACTTGATGGTGGCCTTTACTTAGTTGGGTACCAATTATGTATTGTTATTTTTAAATACTATTTCAGACTTATAGTGTACAAACAAGTGGGAGAGAAAAATTTTATGCAGGAGCGCAATGATGCTTGTACTGCCTATGCTTTATCTCTCATACAACCTTTCTTTCTTTATTTCAGTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGTGAGCTACAACTTTAGTCAATTTATAATTTTCCTACCACTTCTCAATATCCTAGTTGCATTATTCATTGTACTCTCATGTGTGGCCAATTCATTTTTGTTTGGGTTTTCATTGTATGCAGGCATACCCATATTTGCACATACGCAATAAGGAGTTCCCATGGGGTAAGTTTCCATTGCATTACAAGTTCTATGACATCTTTTATATCTCTTGGCAGTCGCAATTTGGGTTTTGATGAGGTAACTAGAACTGGATTCTGCAGTGATGTCATGTAGTATATATTTACTGGACGCCAAGCAAACTTACATTCATCTTGTAACTAATATATTTACTGCTAACTTGGCAGCTAGCAACTAATATGCTCATAAATACCTCGTTCAGCTTGCTAACAGTTTTTAGTCCTATTATAACCTTGTCCTTTCATTAACCCAACTCTCACTACTTTTAAATGCTCCATGGTCAAATTTCTAATGGTAGTTCAACAGCTTCCTCTCTGTTGGTCGATCATCTCAAGGGTCTATGGATACTTATGGGATAAAAGTGTTTGTAAGCTGTTTCCAAGAAGTAAACATTTTAGAATAAAAGTTATATGTTTTTGTAACTGTTTTCGACAGTTGCTTCACTCAGTATATTTTAGAAGAACTGCAGTTGAAATGTTAAAATCTTTACAAACGAAAAAGTCATAGCATCATCGTAGTAAAAAGAGCTGGAGATGATGTACCACGGTATTTGTCAGAACTGGTTGAATTTGATCAATGATCTTATATTCGTTCATCTTTGCTCTCTGCTCGTTGCTCATTTGCTCCTTTTCTGTTTATTATTTATTGTGAAAATAATATTGTTTTATTTTCAATCCCTTTTGCATCAGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGAGGACTATTTTGGTTCAAGGGGACATCGAGCATGGTAATTCTACTTCTCATTTGGTTCATATCAGAAAGACTTCGTTGACCCGTTTGGTTGGATTTTTCTTTTTAATGATGCGTGGGCCATTTTGCATTTGTTAAATGCTAGCAGGGTCCTATGTGAATGAATCATGGTTTAATTTCTTGTGTTGTCAACACTATCCTTCCTGATTAATAAGCCAAACTTTCCACCATTCTAAGGCTCAGTTTGCAGTATGCTGTGTTTGGATTGAAATGTGAGTTTGTAAGTAATAATAGTATTTGAGGTGGTGATGTTTACTTGGTAAACTGAAGCAGTTGTTTGGTTTATCAACAAAGTTGGAATAGGAACTTCGATTTATAAATATTAACGATACATTTTTATTT

mRNA sequence

ACGGTCATTTCAATTATAACTCGGGCATTGGGGATTTGTTGGAGAAAGAGAGAGTCAAAAGAGAATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGATGCTCTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATACCCATATTTGCACATACGCAATAAGGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGAGGACTATTTTGGTTCAAGGGGACATCGAGCATGGTAATTCTACTTCTCATTTGGTTCATATCAGAAAGACTTCGTTGACCCGTTTGGTTGGATTTTTCTTTTTAATGATGCGTGGGCCATTTTGCATTTGTTAAATGCTAGCAGGGTCCTATGTGAATGAATCATGGTTTAATTTCTTGTGTTGTCAACACTATCCTTCCTGATTAATAAGCCAAACTTTCCACCATTCTAAGGCTCAGTTTGCAGTATGCTGTGTTTGGATTGAAATGTGAGTTTGTAAGTAATAATAGTATTTGAGGTGGTGATGTTTACTTGGTAAACTGAAGCAGTTGTTTGGTTTATCAACAAAGTTGGAATAGGAACTTCGATTTATAAATATTAACGATACATTTTTATTT

Coding sequence (CDS)

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCTTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGATGCTCTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATACCCATATTTGCACATACGCAATAAGGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAGGTGAAACATCACTGA

Protein sequence

MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

Homology

[Close]

BLAST of Carg14249 vs. NCBI nr
Match: XP_022941809.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 4.3e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Carg14249 vs. NCBI nr
Match: XP_023001309.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 2.1e-49
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Carg14249 vs. NCBI nr
Match: XP_023545456.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 2.1e-49
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          M+MATIRSNLLRAAFRGASRNSAQPKRGF+SSAHDDALETAKWEKITYAGIAACTTLAFY
Sbjct: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Carg14249 vs. NCBI nr
Match: XP_022929363.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 195.3 bits (495), Expect = 9.8e-47
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGI +C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Carg14249 vs. NCBI nr
Match: XP_022136571.1 (cytochrome c oxidase subunit 6a, mitochondrial [Momordica charantia])

HSP 1 Score: 194.5 bits (493), Expect = 1.7e-46
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFETKEH 98

[Close]

BLAST of Carg14249 vs. TAIR10
Match: AT4G37830.1 (cytochrome c oxidase-related)

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-34
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]

BLAST of Carg14249 vs. Swiss-Prot
Match: sp|Q9T070|COX6A_ARATH (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-33
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]

BLAST of Carg14249 vs. TrEMBL
Match: tr|A0A1S3BPM0|A0A1S3BPM0_CUCME (cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491837 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.1e-45
Identity = 89/98 (90.82%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMA+IRSN LRAA RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of Carg14249 vs. TrEMBL
Match: tr|A0A0A0L3I0|A0A0A0L3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-44
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 3  MATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNL 62
          MA+IRSNLLRAA RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          SKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 96

[Close]

BLAST of Carg14249 vs. TrEMBL
Match: tr|A0A0D2NVS1|A0A0D2NVS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G034000 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-39
Identity = 81/99 (81.82%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MAMA++RS LLRAA RG SR +A PKRGFASS+ HDDA ETAKWEKITY G+A CT LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFETKEH 99

[Close]

BLAST of Carg14249 vs. TrEMBL
Match: tr|A0A0B0PN89|A0A0B0PN89_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum OX=29729 GN=F383_13220 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.2e-39
Identity = 81/99 (81.82%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MAMA++RS LLRAA RG SR +A PKRGFASS+ HDDA ETAKWEKITY G+A CT LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFERKEH 99

[Close]

BLAST of Carg14249 vs. TrEMBL
Match: tr|A0A1U8NPE8|A0A1U8NPE8_GOSHI (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Gossypium hirsutum OX=3635 GN=LOC107950514 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-39
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MAMA++RS LLRAA RG SR +A PKRGFASS+ HDDA ETAKWEKITY G A CT LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGAATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFETKEH 99

The following BLAST results are available for this feature:

BLAST of Carg14249 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941809.1	4.3e-50	100.00	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata]	[more]
XP_023001309.1	2.1e-49	98.98	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]	[more]
XP_023545456.1	2.1e-49	97.96	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
XP_022929363.1	9.8e-47	93.88	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata]	[more]
XP_022136571.1	1.7e-46	93.88	cytochrome c oxidase subunit 6a, mitochondrial [Momordica charantia]	[more]

BLAST of Carg14249 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37830.1	1.0e-34	70.71	cytochrome c oxidase-related	[more]

BLAST of Carg14249 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9T070\|COX6A_ARATH	1.9e-33	70.71	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg14249 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPM0\|A0A1S3BPM0_CUCME	2.1e-45	90.82	cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0L3I0\|A0A0A0L3I0_CUCSA	1.0e-44	90.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1	[more]
tr\|A0A0D2NVS1\|A0A0D2NVS1_GOSRA	1.0e-39	81.82	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G034000 PE=3 ...	[more]
tr\|A0A0B0PN89\|A0A0B0PN89_GOSAR	2.2e-39	81.82	Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu...	[more]
tr\|A0A1U8NPE8\|A0A1U8NPE8_GOSHI	2.9e-39	81.82	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Gossypium hirsutum OX=363...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005751	mitochondrial respiratory chain complex IV
GO:0005743	mitochondrial inner membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004129	cytochrome-c oxidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR001349	Cyt_c_oxidase_su6a
IPR036418	Cyt_c_oxidase_su6a_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0015992	proton transport
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14249-RA	Carg14249-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	GENE3D	G3DSA:4.10.95.10		coord: 29..95 e-value: 3.0E-9 score: 38.8
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	SUPERFAMILY	SSF81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..97
IPR001349	Cytochrome c oxidase, subunit VIa	PFAM	PF02046	COX6A	coord: 38..88 e-value: 1.8E-5 score: 25.1
IPR001349	Cytochrome c oxidase, subunit VIa	PIRSF	PIRSF000277	COX_VIa	coord: 1..98 e-value: 2.2E-22 score: 77.3
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 8..98
None	No IPR available	PANTHER	PTHR11504:SF0	CYTOCHROME C OXIDASE SUBUNIT 6A-LIKE-RELATED	coord: 8..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14249	Csa3G115610	Cucumber (Chinese Long) v2	carcuB0955
Carg14249	MELO3C014946	Melon (DHL92) v3.5.1	carmeB0923
Carg14249	CSPI03G06960	Wild cucumber (PI 183967)	carcpiB0978
Carg14249	Cucsa.260150	Cucumber (Gy14) v1	carcgyB1061
Carg14249	CmaCh04G008500	Cucurbita maxima (Rimu)	carcmaB1288
Carg14249	CmaCh16G007350	Cucurbita maxima (Rimu)	carcmaB1286
Carg14249	CmoCh04G009100	Cucurbita moschata (Rifu)	carcmoB1259
Carg14249	Lsi05G008050	Bottle gourd (USVL1VR-Ls)	carlsiB857
Carg14249	Cp4.1LG01g09060	Cucurbita pepo (Zucchini)	carcpeB1302
Carg14249	Cp4.1LG14g00910	Cucurbita pepo (Zucchini)	carcpeB1301
Carg14249	CsGy3G007080	Cucumber (Gy14) v2	carcgybB0928
Carg14249	MELO3C014946.2	Melon (DHL92) v3.6.1	carmedB0929
Carg14249	CsaV3_3G007040	Cucumber (Chinese Long) v3	carcucB0980
Carg14249	Bhi11G000745	Wax gourd	carwgoB1084

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg14249	Carg05850	Silver-seed gourd	carcarB646

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14249	Watermelon (97103) v2	carwmbB0988
Carg14249	Wax gourd	carwgoB1085
Carg14249	Cucumber (Gy14) v2	carcgybB0932
Carg14249	Cucumber (Gy14) v1	carcgyB1058
Carg14249	Cucurbita maxima (Rimu)	carcmaB1287
Carg14249	Cucurbita maxima (Rimu)	carcmaB1289
Carg14249	Cucurbita moschata (Rifu)	carcmoB1258
Carg14249	Cucurbita pepo (Zucchini)	carcpeB1300
Carg14249	Cucurbita pepo (Zucchini)	carcpeB1304
Carg14249	Bottle gourd (USVL1VR-Ls)	carlsiB855
Carg14249	Melon (DHL92) v3.5.1	carmeB0926
Carg14249	Melon (DHL92) v3.6.1	carmedB0932
Carg14249	Watermelon (Charleston Gray)	carwcgB0914
Carg14249	Watermelon (Charleston Gray)	carwcgB0915
Carg14249	Watermelon (97103) v1	carwmB0942