Carg05850 (gene) Silver-seed gourd

NameCarg05850
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptioncytochrome c oxidase subunit 6a, mitochondrial
LocationCucurbita_argyrosperma_scaffold_033 : 1420799 .. 1422387 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACTCCGCTCAGCCTAAGCGCGGCTTCGCTTCCTCTGCTCACGACGATGCTCGTAAGTCTCTTTATCTCTCTCTCGGTATTTCGGATTGTGATCGTGTATGCGCTACAAACACGTCTCTCTCAATTTGCTTTTCTTTATTGACGGAATTTTTGCTTGTTGCTTTTGGCAACTTTGTTTAACCGGTTATATGTTTGATTTCATTCATTTGCCTGCGCTATTTTCATCTGACGAAATGGAGGAAAACAAGGATGATGTTGATTATTGAATCATGTTAAGAAATTTAGTCCAAAATGATTTGATCCGATGATTTTTGTTCCTTCATGATTGGAAATCTCGCGGAAGGAGGTGTTTTGAAATTTGAATTCTGATTTAAATGTTGGTATTCTATATGTTGTTCAATCATCGAGCGGGAGTATATGCATGACACATTTGAGAATTAACGTGGATGAGGTTTCCAGTCGCTAAGAAGTTAATTTGATTTAAAGCTGATGGGAAAGAAGAAAACAAGAGGGGCAAACATATTTCTTGAACCATTACTGAGTGGCAGCAGCATAATTCTTGATTTCTAGGCTTAATTTACTTCTGATTTCGCATAAATAAGACATGAACGAAAGGAAACGTAAACTCAGTAAATTATTAGAGGGTTTAGGGCTTTTTAATAAAACAATTCTTCCCCAGGATGAAGGTAGTGGAAGTTTCTCCACCTCTAACCTTACGCCTGCTTTTTTTTTGTTCTTTTGGTAACCGGGAGTCAGAACTGTGCTCCTCTTAGCCAGGCACCCACATCTACCTCAAGGCCCAGATTTAAGGAGACATCAAAGGTTTTTAGTATTATGCTCACCCGAAGGTTCGAACTTGGGACCTCTAAGTTGGTATGACCGAGAGGCCGCAAACCTCTTGCCAACGGGACCATTCCTTGTGGGCTTTACCGCTTCTTTATTTTCGCCCATTTTTTTCTCTCACGTTTCTGGGTGGGGTTGGGGGAGGGGGACAGATATTCTTCTGTTTTAGGGGTGGGTTTTTGTAAACTGTTTTGAGATAAGCTAATTCAGTGTTGTGAATTTATTTTCTAGTAACCCACCGTAACTTATACTTCATAGCTCTTTACGTTGTTTGGGTACAATTACTTATTGTTTTTTCTAAATACTATTGCAGAAGGAAAAACCGTATGCAGGAGTGCAATGATGCTTGTGCTCCCTATATTTTATCTCTCATACAAACTCTCTTTCTTTATGTCAGGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGTGAGCTATAGCTTCAGTCAATTTATAATTTTTCCTCCACTTCTCAATACATTAGTTGCATTATGCATTGTTTCTCATTTGTGGCCCATTTTGTTTGGGTTTTCATCGTTTGCAGGCATATCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACGTCATTACTAGT

mRNA sequence

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACTCCGCTCAGCCTAAGCGCGGCTTCGCTTCCTCTGCTCACGACGATGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGCATATCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACGTCATTACTAGT

Coding sequence (CDS)

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACTCCGCTCAGCCTAAGCGCGGCTTCGCTTCCTCTGCTCACGACGATGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGCATATCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACGTCATTACTAG

Protein sequence

MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPRHY
BLAST of Carg05850 vs. NCBI nr
Match: XP_022929363.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 183.0 bits (463), Expect = 4.8e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHYEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

BLAST of Carg05850 vs. NCBI nr
Match: XP_023551866.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.6 bits (457), Expect = 2.4e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY
Sbjct: 1  MAMATIRSNLLRAALRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHYEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

BLAST of Carg05850 vs. NCBI nr
Match: XP_022984430.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 178.7 bits (452), Expect = 9.1e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMA IRSNLLRAAFRGASRN AQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY
Sbjct: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHYEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

BLAST of Carg05850 vs. NCBI nr
Match: XP_011650608.1 (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 2.9e-40
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMA+IRSNLLRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPY+HIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWG 88

BLAST of Carg05850 vs. NCBI nr
Match: XP_022136571.1 (cytochrome c oxidase subunit 6a, mitochondrial [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 3.8e-40
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDD RETAKWEKITYAGI++C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

BLAST of Carg05850 vs. TAIR10
Match: AT4G37830.1 (cytochrome c oxidase-related)

HSP 1 Score: 119.8 bits (299), Expect = 9.1e-28
Identity = 60/89 (67.42%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GI SC+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

BLAST of Carg05850 vs. Swiss-Prot
Match: sp|Q9T070|COX6A_ARATH (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-26
Identity = 60/89 (67.42%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GI SC+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

BLAST of Carg05850 vs. TrEMBL
Match: tr|A0A1S3BPM0|A0A1S3BPM0_CUCME (cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491837 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.3e-40
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMA+IRSN LRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

BLAST of Carg05850 vs. TrEMBL
Match: tr|A0A0A0L3I0|A0A0A0L3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 0

Query: 3  MATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNL 62
          MA+IRSNLLRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHYEEPPAYPYLHIRNKEFPWG 89
          SKGHPH+EEPPAYPY+HIRNKEFPWG
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWG 86

BLAST of Carg05850 vs. TrEMBL
Match: tr|A0A059AMS2|A0A059AMS2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00649 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60
          MAMA +RS LLR++ RG +R S+ PKR FASSAHDDA ETAKWEKITYAGIV+C+ILA Y
Sbjct: 1  MAMAMVRSALLRSSLRGGARPSSVPKRNFASSAHDDAHETAKWEKITYAGIVTCTILAIY 60

Query: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHYEEP AYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPAAYPYLHIRNKEFPWG 88

BLAST of Carg05850 vs. TrEMBL
Match: tr|A0A2P5R238|A0A2P5R238_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22201 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.9e-33
Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAF 60
          MAMA++RS LLRAA RG SR +A PKRGFASS+ HDDA ETAKWEKITY G  +C++LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRRTAPPKRGFASSSHHDDAYETAKWEKITYLGAATCTVLAI 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWGKL 91
          YNLSKGHPH+EEPPAYPYLHIRNKEFPWG +
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGSI 91

BLAST of Carg05850 vs. TrEMBL
Match: tr|A0A0B0PN89|A0A0B0PN89_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum OX=29729 GN=F383_13220 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.1e-33
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 0

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAF 60
          MAMA++RS LLRAA RG SR +A PKRGFASS+ HDDA ETAKWEKITY G+ +C++LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWG 89
          YNLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022929363.14.8e-43100.00cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata][more]
XP_023551866.12.4e-4298.86cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo][more]
XP_022984430.19.1e-4297.73cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima][more]
XP_011650608.12.9e-4093.18PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sa... [more]
XP_022136571.13.8e-4092.05cytochrome c oxidase subunit 6a, mitochondrial [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT4G37830.19.1e-2867.42cytochrome c oxidase-related[more]
Match NameE-valueIdentityDescription
sp|Q9T070|COX6A_ARATH1.6e-2667.42Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BPM0|A0A1S3BPM0_CUCME3.3e-4093.18cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A0A0L3I0|A0A0A0L3I0_CUCSA1.6e-3993.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1[more]
tr|A0A059AMS2|A0A059AMS2_EUCGR1.3e-3380.68Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00649 PE=3 SV... [more]
tr|A0A2P5R238|A0A2P5R238_GOSBA3.9e-3376.92Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22201 PE=3 SV... [more]
tr|A0A0B0PN89|A0A0B0PN89_GOSAR5.1e-3378.65Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005751mitochondrial respiratory chain complex IV
GO:0005743mitochondrial inner membrane
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf
IPR001349Cyt_c_oxidase_su6a
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0015992 proton transport
cellular_component GO:0005751 mitochondrial respiratory chain complex IV
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0004129 cytochrome-c oxidase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05850-RACarg05850-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001349Cytochrome c oxidase, subunit VIaPFAMPF02046COX6Acoord: 34..88
e-value: 1.8E-5
score: 25.0
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 8..88
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3DG3DSA:4.10.95.10coord: 29..90
e-value: 7.6E-9
score: 37.5
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILYSSF81411Mitochondrial cytochrome c oxidase subunit VIacoord: 30..88
NoneNo IPR availablePANTHERPTHR11504:SF0CYTOCHROME C OXIDASE SUBUNIT 6A-LIKE-RELATEDcoord: 8..88