Carg05850 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACTCCGCTCAGCCTAAGCGCGGCTTCGCTTCCTCTGCTCACGACGATGCTCGTAAGTCTCTTTATCTCTCTCTCGGTATTTCGGATTGTGATCGTGTATGCGCTACAAACACGTCTCTCTCAATTTGCTTTTCTTTATTGACGGAATTTTTGCTTGTTGCTTTTGGCAACTTTGTTTAACCGGTTATATGTTTGATTTCATTCATTTGCCTGCGCTATTTTCATCTGACGAAATGGAGGAAAACAAGGATGATGTTGATTATTGAATCATGTTAAGAAATTTAGTCCAAAATGATTTGATCCGATGATTTTTGTTCCTTCATGATTGGAAATCTCGCGGAAGGAGGTGTTTTGAAATTTGAATTCTGATTTAAATGTTGGTATTCTATATGTTGTTCAATCATCGAGCGGGAGTATATGCATGACACATTTGAGAATTAACGTGGATGAGGTTTCCAGTCGCTAAGAAGTTAATTTGATTTAAAGCTGATGGGAAAGAAGAAAACAAGAGGGGCAAACATATTTCTTGAACCATTACTGAGTGGCAGCAGCATAATTCTTGATTTCTAGGCTTAATTTACTTCTGATTTCGCATAAATAAGACATGAACGAAAGGAAACGTAAACTCAGTAAATTATTAGAGGGTTTAGGGCTTTTTAATAAAACAATTCTTCCCCAGGATGAAGGTAGTGGAAGTTTCTCCACCTCTAACCTTACGCCTGCTTTTTTTTTGTTCTTTTGGTAACCGGGAGTCAGAACTGTGCTCCTCTTAGCCAGGCACCCACATCTACCTCAAGGCCCAGATTTAAGGAGACATCAAAGGTTTTTAGTATTATGCTCACCCGAAGGTTCGAACTTGGGACCTCTAAGTTGGTATGACCGAGAGGCCGCAAACCTCTTGCCAACGGGACCATTCCTTGTGGGCTTTACCGCTTCTTTATTTTCGCCCATTTTTTTCTCTCACGTTTCTGGGTGGGGTTGGGGGAGGGGGACAGATATTCTTCTGTTTTAGGGGTGGGTTTTTGTAAACTGTTTTGAGATAAGCTAATTCAGTGTTGTGAATTTATTTTCTAGTAACCCACCGTAACTTATACTTCATAGCTCTTTACGTTGTTTGGGTACAATTACTTATTGTTTTTTCTAAATACTATTGCAGAAGGAAAAACCGTATGCAGGAGTGCAATGATGCTTGTGCTCCCTATATTTTATCTCTCATACAAACTCTCTTTCTTTATGTCAGGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGTGAGCTATAGCTTCAGTCAATTTATAATTTTTCCTCCACTTCTCAATACATTAGTTGCATTATGCATTGTTTCTCATTTGTGGCCCATTTTGTTTGGGTTTTCATCGTTTGCAGGCATATCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACGTCATTACTAGT ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACTCCGCTCAGCCTAAGCGCGGCTTCGCTTCCTCTGCTCACGACGATGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGCATATCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACGTCATTACTAGT ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACTCCGCTCAGCCTAAGCGCGGCTTCGCTTCCTCTGCTCACGACGATGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGCATATCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACGTCATTACTAG MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPRHY
BLAST of Carg05850 vs. NCBI nr
Match: XP_022929363.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 183.0 bits (463), Expect = 4.8e-43 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of Carg05850 vs. NCBI nr
Match: XP_023551866.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 180.6 bits (457), Expect = 2.4e-42 Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0
BLAST of Carg05850 vs. NCBI nr
Match: XP_022984430.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 178.7 bits (452), Expect = 9.1e-42 Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0
BLAST of Carg05850 vs. NCBI nr
Match: XP_011650608.1 (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus]) HSP 1 Score: 173.7 bits (439), Expect = 2.9e-40 Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 0
BLAST of Carg05850 vs. NCBI nr
Match: XP_022136571.1 (cytochrome c oxidase subunit 6a, mitochondrial [Momordica charantia]) HSP 1 Score: 173.3 bits (438), Expect = 3.8e-40 Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0
BLAST of Carg05850 vs. TAIR10
Match: AT4G37830.1 (cytochrome c oxidase-related) HSP 1 Score: 119.8 bits (299), Expect = 9.1e-28 Identity = 60/89 (67.42%), Postives = 67/89 (75.28%), Query Frame = 0
BLAST of Carg05850 vs. Swiss-Prot
Match: sp|Q9T070|COX6A_ARATH (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 1.6e-26 Identity = 60/89 (67.42%), Postives = 67/89 (75.28%), Query Frame = 0
BLAST of Carg05850 vs. TrEMBL
Match: tr|A0A1S3BPM0|A0A1S3BPM0_CUCME (cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491837 PE=3 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 3.3e-40 Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0
BLAST of Carg05850 vs. TrEMBL
Match: tr|A0A0A0L3I0|A0A0A0L3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39 Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 0
BLAST of Carg05850 vs. TrEMBL
Match: tr|A0A059AMS2|A0A059AMS2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00649 PE=3 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33 Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 0
BLAST of Carg05850 vs. TrEMBL
Match: tr|A0A2P5R238|A0A2P5R238_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22201 PE=3 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 3.9e-33 Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = 0
BLAST of Carg05850 vs. TrEMBL
Match: tr|A0A0B0PN89|A0A0B0PN89_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum OX=29729 GN=F383_13220 PE=3 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 5.1e-33 Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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