CmaCh04G008500 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G008500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cytochrome c oxidase subunit 6a, mitochondrial-like protein
Location	Cma_Chr04 : 4363716 .. 4366327 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGTTTTGGTGAAAGGGCTCTCGATCGAAATTGCAAGGGTATGGTCATTTCAATTATAACTCGGGCATTGGCGATTTGTTAGAGAAAGAGCGAGTCAAAAGAGAATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCATCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGATGCTCGTAAGTCTCTCTCTCAGTATTTCTGGATATGTTTTTTTCTTTATTGACGGAATTTTTCTTCTTACTTTTGGCAACTTCGTTTAGCCTATTCATTTTCCTGGCCTATTTTTATGATGAAATTGGGGAAACTAGGATGATATTAATTGTTGAATCGTGTTCAGAAATTTGGACCAAGATAATTTGGTCGGGCGCTCTTTCTTCCTTTTAGATTGCAAGTCTTGCAAGGGGAGGTTTTTTTTTTCCCTTAAATTTTAAATTCAGATTTAAATGTTATTATTCAATAGTTTTGTTAAATCATAGTATGGGATGGGAGTGTATACATGACATATTTGACAATTAACTGTAGATAGGGTTTCCAGTCGCTAAGGAGTAGTTTTGAATTAAAGTTCGTGGTAAGGAAAAAGGCAAGAGGGGCAAAAGCTTCCTGTTCCATTACTGAGTGGCAACAATATCATTCTTGATTTCTGTAATTACAAAAAAATCCTTTCTAAAGTCTTATATGTGGCTTGTGGTAGGTTCAGTTTCCTTTTGATTTCACATAAATACGACATGAAGGAAAGGGAATATGCAGTAAGTTTATTAGACGGTTTAGGGCTTCAGTTAAAAAAAATTCTCCTCTGGGAAGTTTATACGCCTCTAATCCTACGCCTGCCTCTTATTTCTTTATTTCCCCCATTTTTTTCTTTCTTTCTTTTCCCCACATAATTCTGGGTTGCGAGTAAGGGGACGAATATTATTCTGTGTTTTGAGGTGATTTCAGTAAATTGTTGGAGCTAAACCAATCTGTGCTGTGAATTTATTTTATATTGATCCACCATAACATATACTTGATGGTGGCCTTTACTTAGTTGGGTACAAATTATGTATTATTATTTTTAAATACTATTTGAGACTTATAGTGTACAAGCAAGTGGGAGAGAAAAATTTTATGCAGGAGCGCAATGATGCTTGTACTGCCTATGCTTTATCTCTCATACAACCTTTCTTTCTTTATTTCAGTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAACCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGTGAGCTACAACTTTAGTCAATTTATAATTTTCCTACCACTTCTCAATATCGTAGTTGCATTATTCATTGTACTCTCATGTGTGGCCAATTCATTTTTGTCTGGGTTTTTATTGTATGCAGGCATACCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTTCCATTGCATTACAAGTTCTATGACATCTTTTATATCTCTTGGCAGTCGCAATTTGGGTTTTGATGAGGTAACTAGAACTGGATGCTGCAGTGATGTCATGTAGTATATATTTACTGGATGCCAAGCAAACTTACAGCTATCTTGTAACTAATATATTTACTGCTAACTTGGCAGCTAGCAACTAATATGCTCATAAATACCTCGTTCTGCTTGCTAACAGTTTTTAGTCCTATTATATAACCTTGTCCTTTCATTAACCCAACTCTCACTACTTTTAAATGCTCCATGGTCAATTTCTAATGGTAGTTCAACAGCTTCCTCTTTCTGTTGGTTGATCATCTCAAGGGTCTATGGATACTTCTGGGATAAACGTGTTTGTAAGCTGTTTCCAAGAAGTAAACATTTTAGACTAAAAGTTATATGTTTTTGTAACTGTTTTCGACAGTTGCTTCTCTCAGTATATTTTAGAAGAACTGCAGTTGAAATGTTAAAATCTTTACAAACGAAAAAGTCATAGCATCATCGTAGGTAAAAGAGCTGGAGATGATGTACCACGGCATTTATCAGAACTGGTTGAATTTGATCGATGATCTTATATTCGTTCATCTTTGCTCTCTGCTCGTTGCTCATTTTCTCCTTTTCTGTTTATTATTTATTGTGAAAATAATACTGTTTTGTTTTCAATCCCTTTTGCATCAGGTCCCGATGGTCTTTTTGAGGTGAAACATCACTGAGGACTATTTTGGTTCAAGGGGACATCGAGCATGGTAATTCTACTTCTCATTTGGTTCATATCAGAAAGACTTCGTTGGCCCGTTTGGTTGGATTTTTCTTTTTAATGTGCGTGGGCCATTTTGCATTTGTTAAATGCTAGCAGGGTCCTGTGTGAATGAATCATGGTTTAATTTCTTGTGTTGTCAAAACTATCCTTCCTGATTAATAAGCCAAACTTTCCACCATTCTAAGGCTCAGTTTGCAGTATGCTGTGTTTGGATTGAAATGTGAGTTTGCAAGTAATAATAGTATTTGAGGTGGTGATGTTTACTTGGTAAACTGAAGCAGTTGTTTGGTTTATCAACAAAGTTGGAACAGGAACTTCGATTTATAAATATTAAC

mRNA sequence

GGAAGTTTTGGTGAAAGGGCTCTCGATCGAAATTGCAAGGGTATGGTCATTTCAATTATAACTCGGGCATTGGCGATTTGTTAGAGAAAGAGCGAGTCAAAAGAGAATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCATCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGATGCTCTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAACCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATACCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTCCCGATGGTCTTTTTGAGGTGAAACATCACTGAGGACTATTTTGGTTCAAGGGGACATCGAGCATGGTAATTCTACTTCTCATTTGGTTCATATCAGAAAGACTTCGTTGGCCCGTTTGGTTGGATTTTTCTTTTTAATGTGCGTGGGCCATTTTGCATTTGTTAAATGCTAGCAGGGTCCTGTGTGAATGAATCATGGTTTAATTTCTTGTGTTGTCAAAACTATCCTTCCTGATTAATAAGCCAAACTTTCCACCATTCTAAGGCTCAGTTTGCAGTATGCTGTGTTTGGATTGAAATGTGAGTTTGCAAGTAATAATAGTATTTGAGGTGGTGATGTTTACTTGGTAAACTGAAGCAGTTGTTTGGTTTATCAACAAAGTTGGAACAGGAACTTCGATTTATAAATATTAAC

Coding sequence (CDS)

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCTGCCATCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGATGCTCTTGAAACGGCAAAATGGGAGAAGATTACTTATGCAGGCATTGCAGCCTGCACCACTTTAGCATTCTATAACCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATACCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTCCCGATGGTCTTTTTGAGGTGAAACATCACTGA

Protein sequence

MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH

Homology

[Close]

BLAST of CmaCh04G008500 vs. Swiss-Prot
Match: COX6A_ARATH (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-33
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]

BLAST of CmaCh04G008500 vs. TrEMBL
Match: A0A0A0L3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.3e-45
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 3  MATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNL 62
          MA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          SKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 96

[Close]

BLAST of CmaCh04G008500 vs. TrEMBL
Match: A0A0D2NVS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G034000 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-40
Identity = 81/99 (81.82%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAH-DDALETAKWEKITYAGIAACTTLAF 60
          MAMA++RS LLRAA+RG SR +A PKRGFASS+H DDA ETAKWEKITY G+A CT LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFETKEH 99

[Close]

BLAST of CmaCh04G008500 vs. TrEMBL
Match: A0A0B0PN89_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13220 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.3e-40
Identity = 81/99 (81.82%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAH-DDALETAKWEKITYAGIAACTTLAF 60
          MAMA++RS LLRAA+RG SR +A PKRGFASS+H DDA ETAKWEKITY G+A CT LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFERKEH 99

[Close]

BLAST of CmaCh04G008500 vs. TrEMBL
Match: A0A059AMS2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00649 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.5e-39
Identity = 79/98 (80.61%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMA +RS LLR+++RG +R S+ PKR FASSAHDDA ETAKWEKITYAGI  CT LA Y
Sbjct: 1  MAMAMVRSALLRSSLRGGARPSSVPKRNFASSAHDDAHETAKWEKITYAGIVTCTILAIY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEP AYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPAAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CmaCh04G008500 vs. TrEMBL
Match: A0A0B0PEW8_GOSAR (Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreum GN=F383_28800 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.0e-39
Identity = 80/99 (80.81%), Postives = 85/99 (85.86%), Query Frame = 1


Query: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MAMA++RS LLR A+RG SR  A PKRGF+SS  HDDA ETAKWEKITY GI  CT LAF
Sbjct: 1  MAMASVRSGLLRTALRGGSRPPAPPKRGFSSSPNHDDAYETAKWEKITYLGILTCTGLAF 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPH+EEPP YPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 YNLSKGHPHYEEPPPYPYLHIRNKEFPWGPDGLFEVKHH 99

[Close]

BLAST of CmaCh04G008500 vs. TAIR10
Match: AT4G37830.1 (AT4G37830.1 cytochrome c oxidase-related)

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-34
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 1


Query: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSA-HDDALETAKWEKITYAGIAACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]

BLAST of CmaCh04G008500 vs. NCBI nr
Match: gi|778676558|ref|XP_011650608.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 7.3e-46
Identity = 89/98 (90.82%), Postives = 93/98 (94.90%), Query Frame = 1


Query: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CmaCh04G008500 vs. NCBI nr
Match: gi|659098495|ref|XP_008450167.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 1


Query: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
          MAMA+IRSN LRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]

BLAST of CmaCh04G008500 vs. NCBI nr
Match: gi|700201190|gb|KGN56323.1| (hypothetical protein Csa_3G115610 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-45
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 3  MATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFYNL 62
          MA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          SKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 96

[Close]

BLAST of CmaCh04G008500 vs. NCBI nr
Match: gi|823139668|ref|XP_012469699.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial-like [Gossypium raimondii])

HSP 1 Score: 171.8 bits (434), Expect = 6.0e-40
Identity = 81/99 (81.82%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAH-DDALETAKWEKITYAGIAACTTLAF 60
          MAMA++RS LLRAA+RG SR +A PKRGFASS+H DDA ETAKWEKITY G+A CT LA 
Sbjct: 1  MAMASVRSGLLRAALRGGSRPTAPPKRGFASSSHHDDAYETAKWEKITYLGVATCTVLAI 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 99
          YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFE K H
Sbjct: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFETKEH 99

[Close]

BLAST of CmaCh04G008500 vs. NCBI nr
Match: gi|778676556|ref|XP_011650607.1| (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-39
Identity = 89/141 (63.12%), Postives = 93/141 (65.96%), Query Frame = 1


Query: 1   MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60
           MAMA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFY
Sbjct: 1   MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61  NLSKGHPHHEEPP-------------------------------------------AYPY 99
           NLSKGHPHHEEPP                                           AYPY
Sbjct: 61  NLSKGHPHHEEPPVSYNFSQFILFPQVLSTLVELWNYVLYSHVLTIYFCLGFHCMQAYPY 120

The following BLAST results are available for this feature:

BLAST of CmaCh04G008500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COX6A_ARATH	1.9e-33	70.71	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A ...	[more]

BLAST of CmaCh04G008500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3I0_CUCSA	4.3e-45	90.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G115610 PE=3 SV=1	[more]
A0A0D2NVS1_GOSRA	4.2e-40	81.82	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G034000 PE=3 SV=1	[more]
A0A0B0PN89_GOSAR	9.3e-40	81.82	Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu...	[more]
A0A059AMS2_EUCGR	3.5e-39	80.61	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00649 PE=3 SV=1	[more]
A0A0B0PEW8_GOSAR	6.0e-39	80.81	Cytochrome c oxidase subunit 6a, mitochondrial-like protein OS=Gossypium arboreu...	[more]

BLAST of CmaCh04G008500 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37830.1	1.0e-34	70.71	cytochrome c oxidase-related	[more]

BLAST of CmaCh04G008500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676558\|ref\|XP_011650608.1\|	7.3e-46	90.82	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sa...	[more]
gi\|659098495\|ref\|XP_008450167.1\|	1.2e-45	90.82	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo]	[more]
gi\|700201190\|gb\|KGN56323.1\|	6.2e-45	90.63	hypothetical protein Csa_3G115610 [Cucumis sativus]	[more]
gi\|823139668\|ref\|XP_012469699.1\|	6.0e-40	81.82	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial-like [Gossypium raimon...	[more]
gi\|778676556\|ref\|XP_011650607.1\|	1.3e-39	63.12	PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial isoform X1 [Cucumis sa...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001349	Cyt_c_oxidase_su6a

Vocabulary: **Molecular Function**
Term	Definition
GO:0004129	cytochrome-c oxidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005743	mitochondrial inner membrane
GO:0005751	mitochondrial respiratory chain complex IV

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015992	proton transport
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G008500.1	CmaCh04G008500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001349	Cytochrome c oxidase, subunit VIa	GENE3D	G3DSA:4.10.95.10		coord: 31..93 score: 4.5
IPR001349	Cytochrome c oxidase, subunit VIa	PIR	PIRSF000277	COX_VIa	coord: 1..98 score: 1.4
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..98 score: 2.6
IPR001349	Cytochrome c oxidase, subunit VIa	PFAM	PF02046	COX6A	coord: 38..88 score: 1.
IPR001349	Cytochrome c oxidase, subunit VIa	unknown	SSF81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..97 score: 1.57

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G008500	Cucsa.260150	Cucumber (Gy14) v1	cgycmaB0721
CmaCh04G008500	Csa3G115610	Cucumber (Chinese Long) v2	cmacuB702
CmaCh04G008500	MELO3C014946	Melon (DHL92) v3.5.1	cmameB689
CmaCh04G008500	CSPI03G06960	Wild cucumber (PI 183967)	cmacpiB710
CmaCh04G008500	CmoCh16G007950	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G008500	CmoCh04G009100	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G008500	Lsi05G008050	Bottle gourd (USVL1VR-Ls)	cmalsiB692
CmaCh04G008500	Cp4.1LG01g09060	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G008500	Cp4.1LG14g00910	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G008500	MELO3C014946.2	Melon (DHL92) v3.6.1	cmamedB781
CmaCh04G008500	CsaV3_3G007040	Cucumber (Chinese Long) v3	cmacucB0837
CmaCh04G008500	Cla97C10G191520	Watermelon (97103) v2	cmawmbB716
CmaCh04G008500	Bhi11G000745	Wax gourd	cmawgoB0815
CmaCh04G008500	CsGy3G007080	Cucumber (Gy14) v2	cgybcmaB416
CmaCh04G008500	Carg05850	Silver-seed gourd	carcmaB1414
CmaCh04G008500	Carg14249	Silver-seed gourd	carcmaB1288

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G008500	CmaCh16G007350	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G008500	Watermelon (97103) v2	cmawmbB718
CmaCh04G008500	Wax gourd	cmawgoB0822
CmaCh04G008500	Cucurbita maxima (Rimu)	cmacmaB546
CmaCh04G008500	Cucurbita moschata (Rifu)	cmacmoB727
CmaCh04G008500	Melon (DHL92) v3.5.1	cmameB710
CmaCh04G008500	Watermelon (Charleston Gray)	cmawcgB614
CmaCh04G008500	Watermelon (Charleston Gray)	cmawcgB639
CmaCh04G008500	Cucurbita pepo (Zucchini)	cmacpeB702
CmaCh04G008500	Cucurbita pepo (Zucchini)	cmacpeB741
CmaCh04G008500	Bottle gourd (USVL1VR-Ls)	cmalsiB639
CmaCh04G008500	Melon (DHL92) v3.6.1	cmamedB804