Lsi07G011290 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal protein L28
Location	chr07 : 16735850 .. 16739395 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTCCTAAACCCTATTTCCCCTTCAGCCACTCCCTTCCCTCCCATTACCAGCCACTGCACCCCACCCCCGCCGCACGCCGTTCACCCCTTACTATTAGCCGCCGCAGTCTCAGCCTGCCGACGAACTTGCCGCCGCTCCCTCCCTTTCACATTCTCTCACCTCTCCGAGCAATCAGAGTTACTTGCTTTGCTTTTTTTGTTCTTTCTTTCTTTCTCAAATATTTGAAATTCTTGCAAATTCAGAGGTTCCAAAGAGGGCTAAGGTACCGTATCTGAAATTCCGATTAATTTTGCTCCTGCACTTTCTCAATACATGCTTCCTCTAATCTGAATTTCAGATTCTTGTTTCTGGCTTCATTACTTTCTTATTGTGATTTGTTGGAACGGAAATGGAAACTTGGTTTTTATTCATTTCTGGTTTTAGTTTGTGTTCTGTGCAATTTGATCCGTTTTTCTGGATGTGAGTATGATTTTCACTTTGGATCGTTTGGCCGAATGTGACGTTGTTACTAGGCGATTAAGGTGTAGATAGTGATAAGTGGTGACTAAGGTGCATGGCGTCATTTTCCGATTTCCGACGGATTCGACCGAATATTTCTCATATTTTCCCTCTCTGCCGATTTTTTTTTTGCTGATGGATTTTTTGTGCTGCTTCCTAGGTATTTACAGAACGACGGAGTGAAATAAAACAAATAGCTGATGAAAACTTCATTTCATCTCAAATCCTGCTGCTCAAAATACAGTCCCCCTGCACCGAGTGGAATTTCATCGAACTCGATTTTCTTTCTGTAGAAGCTTGTTGGTAGTAATTCAAGCTCATTGTCGCAGATCGTTCTACTTTTGTTCCTATTTTTAGGAGTAGACTTGGATCACGGCTGATTGTACGAGAGAGAGTCAATAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGAGCGAAGCGCGGCATTTATGCTGGCCGTCACATCCAATTCGGCAACCGTGTCAGTGAAGACGGTGGCAACAAGTATGAACCTCTTCTATTTCCTTTATTTTCTTAAAATCTTTGGTCGAGATTCTCGCTGAATATGAATGCATTTACTGACTGAAGAGGAGAGGGGAGAGGAATAGCCATAGAGATGGAAGAGGGGAAACATTTACACTAAAAAACTACTAAGTTAACTATAGCTTCAAAAAATCTGTGATAGAGTAGTTCTTTTATCATGGAAGAACCGATTATTTCTTTCTTCTCAAGTGATTCAGCAGAAGGTTTTAATGAAATCTCCCTTTGAGTTTCTTTATTTTTCTTACTCCCTCTTAATTGGAGAAGTCTTTTGTAAATCTCCCTTATGAGGGCCATCCTTTGTGATTTCATGCCATGAATGAAATTGCTTCTTATCCAAGAAAGAACGATTGCAAGTGAAGGTGCCACAAATGAATTTAGTGCACTCTAAATTGATAGCATCAAGGACATTTGGCAGAAACTTCTTGCTGTTACTATTTCAAAACTTATGTCTTTTCATTCATGCTTCTAATTTTTCTTTTCGAGTAATAGATGATTGTTACTCACAAGTTTTGCTGGAGGAGTTATTGAATATATATCGGTTTTCTGCTCTCATTCACTTTGTGAATTTCCATGTATACCGATGAAAGCGATGTTCTTAGAGTACTGGATCACCAATCATACTGGAACTGGTTATTCATTCATGTAAATATTTAAATATCGGATTATCACCTCAGCAGTCTGAGGTGAATTTTTTCTGTTTTTTGATGCCTTGTCTTGATGATTGTTTGGATTTGGATGTGGGATTGTTTGTGTACAGATTTGGATGTGGGGTTAGCATATGAACCTATTGTGCTACTAGAACTCTTAACGCTGCTTGACTAGGAATTGTAGATCTACAATCAAGTGGAGTTTTTTTGTTTTAGGATAAGGTGGAGATTTTATTTTGATCGTGTAATTTGTTTTGCTGTGAGGTTTTTATGTCCCGCTCCTATATCAGTATATATACATGTGGATTTGGAAGAACCCTTAGGTGGGGAGATGAGGACATGAGTCGGGATTCAGCATGGGTTTGGCTTCCTAAGCTCAATGCCCCCAACATACTGTTTGACAACCCGAATTCAATTAGAGAAACCAACTGGCTTGAACATCAGCCTACTATTCACCCCTCCACCACACACAATTTTCAACTCAAGCTTCCTAGACTTGCACTCCAAACACAACCAGTGACCCAAATGACCCATTAGATCATTATAAGAAGAAAATGAACTGAAAGCTGTGTTTCCTTCATTTTATTGGTTTTTGCTGTATATTTTTAGCCTTTTATTTACATGTCTAGGGCATGCCTCTCGTTCTCTTGTATTCAGAAATTTGAGGCACAATATAATAGTTTCATTTGGTCAACTTGGAGCGTAATTCTCGTATCTTCGGATTCTCAATCTTTTCTTACATTCACCATCTATTTATAACTTTACTGGTGTAAATTGAGCATCTCTTTTGTACTTTTAGTTTATGTAATCTTTTGTTCAACTGAAAATCCTTTTTTAATCCATTGGAATGACCTCATCATTTTGTAAATGATTCGGTTTCCTAAAAAAAAAGGGAAAGTAGTCGTTTTCTTCCATTGTATTGGCTTTATGTCTATATAAAGGGTTCGGTGCCTTTTTCAATTCTTTAGCTCACAGACCTTCATATTGGCATGATCTTATACTGTTTCATTTCGTCATGCGATCATTTTTTCAATATTGGAGTATTTAGCCTGTATGTGCTGGTTCTTATAGATCAAGGAGGAGTTGGAAACCAAATGTCCAAGAGAAGCGGCTTTTCAGTTATATTCTAGACCGGCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAGATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATCGAGAAGATGTATGAAGAACTCGGGCAGACGGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGAACTGAAATTATCTGAGAGGGCAGCAAGAAAGGAGGCGAGAAGACAGATGTATGGCAGTTCAACCAAACACAATCAGATCAAAGAGGGGCGAGAAGACCGCCATGGATCTAGCGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATGCCTAATTATTTCGAGGAGACTTTTTTTTTTCTTTTTCCAACTTGGGAGTTCAAGCCTTGACTTTTTCTTATCCCTTTCCAAAGATTTGTTTCCTCATTTTTCACTGAAAAAGCTTGTGTAGCTTATTTATATTTTGTTTAATGTATACAGTTAGAAATGAGAATTGTTTTTGGAAATTGAGATGTGAAATCTTAAAACTTATTGTTGAATAAGATTTAGCTTAAATATA

mRNA sequence

CCATTCCTAAACCCTATTTCCCCTTCAGCCACTCCCTTCCCTCCCATTACCAGCCACTGCACCCCACCCCCGCCGCACGCCGTTCACCCCTTACTATTAGCCGCCGCAGTCTCAGCCTGCCGACGAACTTGCCGCCGCTCCCTCCCTTTCACATTCTCTCACCTCTCCGAGCAATCAGAGTTACTTGCTTTGCTTTTTTTGTTCTTTCTTTCTTTCTCAAATATTTGAAATTCTTGCAAATTCAGAGGTTCCAAAGAGGGCTAAGGTATTTACAGAACGACGGAGTGAAATAAAACAAATAGCTGATGAAAACTTCATTTCATCTCAAATCCTGCTGCTCAAAATACAGTCCCCCTGCACCGAGTGGAATTTCATCGAACTCGATTTTCTTTCTGTAGAAGCTTGTTGGTAGTAATTCAAGCTCATTGTCGCAGATCGTTCTACTTTTGTTCCTATTTTTAGGAGTAGACTTGGATCACGGCTGATTGTACGAGAGAGAGTCAATAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGAGCGAAGCGCGGCATTTATGCTGGCCGTCACATCCAATTCGGCAACCGTGTCAGTGAAGACGGTGGCAACAAATCAAGGAGGAGTTGGAAACCAAATGTCCAAGAGAAGCGGCTTTTCAGTTATATTCTAGACCGGCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAGATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATCGAGAAGATGTATGAAGAACTCGGGCAGACGGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGAACTGAAATTATCTGAGAGGGCAGCAAGAAAGGAGGCGAGAAGACAGATGTATGGCAGTTCAACCAAACACAATCAGATCAAAGAGGGGCGAGAAGACCGCCATGGATCTAGCGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATGCCTAATTATTTCGAGGAGACTTTTTTTTTTCTTTTTCCAACTTGGGAGTTCAAGCCTTGACTTTTTCTTATCCCTTTCCAAAGATTTGTTTCCTCATTTTTCACTGAAAAAGCTTGTGTAGCTTATTTATATTTTGTTTAATGTATACAGTTAGAAATGAGAATTGTTTTTGGAAATTGAGATGTGAAATCTTAAAACTTATTGTTGAATAAGATTTAGCTTAAATATA

Coding sequence (CDS)

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGAGCGAAGCGCGGCATTTATGCTGGCCGTCACATCCAATTCGGCAACCGTGTCAGTGAAGACGGTGGCAACAAATCAAGGAGGAGTTGGAAACCAAATGTCCAAGAGAAGCGGCTTTTCAGTTATATTCTAGACCGGCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAGATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATCGAGAAGATGTATGAAGAACTCGGGCAGACGGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGAACTGAAATTATCTGAGAGGGCAGCAAGAAAGGAGGCGAGAAGACAGATGTATGGCAGTTCAACCAAACACAATCAGATCAAAGAGGGGCGAGAAGACCGCCATGGATCTAGCGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATGCCTAA

Protein sequence

MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSSTKHNQIKEGREDRHGSSEEAASSEGGSHGDDGPQQRVANA

Homology

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BLAST of Lsi07G011290 vs. Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 4.1e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 30  KKCIPDSKV----VMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G+Y G  +QFGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLK 114
           +R I +K+T   L+ I K GGID YL K
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTK 138

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BLAST of Lsi07G011290 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.0e-10
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A++    G+  Q GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

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BLAST of Lsi07G011290 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDAFLLSTPNRKLPTE 80

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BLAST of Lsi07G011290 vs. Swiss-Prot
Match: RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-09
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 41  NRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRC 100
           ++ ++ +Y G   + GN      G+K+RR W PN   K L+S +L+    + VT+  LR 
Sbjct: 25  SKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRT 84

Query: 101 IDKAGGIDEYLLKT 115
           IDK GG+DEYL+K+
Sbjct: 85  IDKEGGLDEYLVKS 98

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BLAST of Lsi07G011290 vs. Swiss-Prot
Match: RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 50  GRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +Q GN VS    NKSRR W PN+QE  L S  L R +R++++T+ +R I+  GG+D 
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGLDA 68

Query: 110 YLLKTPYHKMDTEIGLFWKAKIEKMYE 137
            LL  P  +++ +     K +I+K  E
Sbjct: 69  ALLDIPDARLNQDARRV-KKQIQKAIE 93

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BLAST of Lsi07G011290 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.5e-101
Identity = 195/220 (88.64%), Postives = 205/220 (93.18%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TKHNQIKEGREDRHGSSEE-AASSEGGSHGDDGPQQRVAN 220
            K NQIKEG E  +GSSEE AASSEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

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BLAST of Lsi07G011290 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.9e-88
Identity = 171/206 (83.01%), Postives = 183/206 (88.83%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF+ELKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TKHNQIKEGREDRHGSSEEAASSEGG 207
            K  +I E R    G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

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BLAST of Lsi07G011290 vs. TrEMBL
Match: A0A0B0N4M4_GOSAR (54S ribosomal L24, mitochondrial OS=Gossypium arboreum GN=F383_01611 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.3e-86
Identity = 168/206 (81.55%), Postives = 181/206 (87.86%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILD  IRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDHQIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLAERAARRDARRQMYGWS 180

Query: 181 TKHNQIKEGREDRHGSSEEAASSEGG 207
            K  +I E R    G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

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BLAST of Lsi07G011290 vs. TrEMBL
Match: A0A067FV36_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.3e-86
Identity = 163/222 (73.42%), Postives = 195/222 (87.84%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRV 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS++VMNRAKRG++AG+HIQFGNRV
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR+WKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           DTE+GL+WK KIEK+YEELGQTEV FF+PE+EAK EQ F+++KL++RAAR+E RRQMYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STKHNQIKEGREDRHGSSEEAAS-SEGGSHGDDGPQQRVANA 221
           S+K  QI++G  D   ++EEAA     G   +  P+  VAN+
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVANS 222

[Close]

BLAST of Lsi07G011290 vs. TrEMBL
Match: V4UM17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.3e-86
Identity = 163/222 (73.42%), Postives = 195/222 (87.84%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRV 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS++VMNRAKRG++AG+HIQFGNRV
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR+WKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           DTE+GL+WK KIEK+YEELGQTEV FF+PE+EAK EQ F+++KL++RAAR+E RRQMYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STKHNQIKEGREDRHGSSEEAAS-SEGGSHGDDGPQQRVANA 221
           S+K  QI++G  D   ++EEAA     G   +  P+  VAN+
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVANS 222

[Close]

BLAST of Lsi07G011290 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family)

HSP 1 Score: 277.7 bits (709), Expect = 6.1e-75
Identity = 141/212 (66.51%), Postives = 165/212 (77.83%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+KVVM RAKRG+YAGRHIQ+GNRVS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GL+WK K+E  Y ELGQ EV FF+PEDEAK EQGF++L ++++ AR+EARR      
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARR------ 180

Query: 181 TKHNQIKEGREDRHGSSEEAASSEGGSHGDDG 213
           T   +    + D   S E    SE     D+G
Sbjct: 181 TFRKKGGGNKGDEEASIEGGGGSESHQEDDNG 206

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BLAST of Lsi07G011290 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 2.1e-101
Identity = 195/220 (88.64%), Postives = 205/220 (93.18%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TKHNQIKEGREDRHGSSEE-AASSEGGSHGDDGPQQRVAN 220
            K NQIKEG E  +GSSEE AASSEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

[Close]

BLAST of Lsi07G011290 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo])

HSP 1 Score: 364.0 bits (933), Expect = 1.8e-97
Identity = 192/221 (86.88%), Postives = 204/221 (92.31%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVK+SLKK +PDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIE +YEELG+ EVVFFSPEDEAKFEQ F++LKLSERAARKEARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 T-KHNQIKEGREDRHGSSEEAASSEGGSHG-DDGPQQRVAN 220
           T K NQIKEG ED + SSEEAASSEGGSHG DD  QQ VAN
Sbjct: 181 TNKLNQIKEGGEDTNVSSEEAASSEGGSHGDDDSHQQWVAN 221

[Close]

BLAST of Lsi07G011290 vs. NCBI nr
Match: gi|823122027|ref|XP_012469124.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii])

HSP 1 Score: 333.6 bits (854), Expect = 2.7e-88
Identity = 171/206 (83.01%), Postives = 183/206 (88.83%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF+ELKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TKHNQIKEGREDRHGSSEEAASSEGG 207
            K  +I E R    G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

[Close]

BLAST of Lsi07G011290 vs. NCBI nr
Match: gi|1009136027|ref|XP_015885311.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 330.5 bits (846), Expect = 2.3e-87
Identity = 164/200 (82.00%), Postives = 183/200 (91.50%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMK I+KKVGE N+APGVK+SLKKCIPDSK+VMNRAKRGI+AGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKNIMKKVGEKNMAPGVKESLKKCIPDSKIVMNRAKRGIFAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYSKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEK+YEELGQ EVVFFSPEDE KFEQ F+EL+L+E+AA+KEAR+QM+G S
Sbjct: 121 TEMGLFWKAKIEKLYEELGQKEVVFFSPEDETKFEQEFKELRLNEKAAQKEARKQMFGWS 180

Query: 181 TKHNQIKEGREDRHGSSEEA 201
            K  Q++EG      + EEA
Sbjct: 181 GKLKQMEEGEAKNEETKEEA 200

[Close]

BLAST of Lsi07G011290 vs. NCBI nr
Match: gi|728825208|gb|KHG06146.1| (54S ribosomal L24, mitochondrial [Gossypium arboreum])

HSP 1 Score: 327.4 bits (838), Expect = 1.9e-86
Identity = 168/206 (81.55%), Postives = 181/206 (87.86%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILD  IRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDHQIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLAERAARRDARRQMYGWS 180

Query: 181 TKHNQIKEGREDRHGSSEEAASSEGG 207
            K  +I E R    G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

The following BLAST results are available for this feature:

BLAST of Lsi07G011290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM24_YEAST	4.1e-12	42.05	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
RL28_MAGMM	5.0e-10	45.07	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
RL28_GLUDA	3.2e-09	40.00	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
RM24_SCHPO	5.5e-09	39.19	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
RL28_RHOCS	2.1e-08	39.08	50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]

BLAST of Lsi07G011290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1P8_CUCSA	1.5e-101	88.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1	[more]
A0A0D2PMQ4_GOSRA	1.9e-88	83.01	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1	[more]
A0A0B0N4M4_GOSAR	1.3e-86	81.55	54S ribosomal L24, mitochondrial OS=Gossypium arboreum GN=F383_01611 PE=3 SV=1	[more]
A0A067FV36_CITSI	2.3e-86	73.42	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1	[more]
V4UM17_9ROSI	2.3e-86	73.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1	[more]

BLAST of Lsi07G011290 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31460.1	6.1e-75	66.51	Ribosomal L28 family	[more]

BLAST of Lsi07G011290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456779\|ref\|XP_004146126.1\|	2.1e-101	88.64	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus]	[more]
gi\|659095444\|ref\|XP_008448584.1\|	1.8e-97	86.88	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo]	[more]
gi\|823122027\|ref\|XP_012469124.1\|	2.7e-88	83.01	PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii]	[more]
gi\|1009136027\|ref\|XP_015885311.1\|	2.3e-87	82.00	PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba]	[more]
gi\|728825208\|gb\|KHG06146.1\|	1.9e-86	81.55	54S ribosomal L24, mitochondrial [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR026569	Ribo_L28/L24
IPR001383	Ribosomal_L28

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006457	protein folding
biological_process	GO:0006950	response to stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011290.1	Lsi07G011290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 42..110 score: 14
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 23..177 score: 1.1
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 46..103 score: 3.9
None	No IPR available	GENE3D	G3DSA:2.30.170.40		coord: 43..118 score: 6.6
None	No IPR available	unknown	SSF143800	L28p-like	coord: 43..119 score: 8.83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G011290	Csa3G005030	Cucumber (Chinese Long) v2	culsiB228
Lsi07G011290	CSPI03G00990	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G011290	Cucsa.322380	Cucumber (Gy14) v1	cgylsiB530
Lsi07G011290	CmaCh16G012200	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G011290	CmoCh16G012630	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G011290	Cla008867	Watermelon (97103) v1	lsiwmB429
Lsi07G011290	MELO3C013792	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G011290	ClCG10G000990	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G011290	MELO3C013792.2	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G011290	Cla97C10G185610	Watermelon (97103) v2	lsiwmbB395
Lsi07G011290	BhiUN179G4	Wax gourd	lsiwgoB575
Lsi07G011290	Cp4.1LG14g10040	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G011290	CsGy3G000940	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G011290	Carg19495	Silver-seed gourd	carlsiB389
Lsi07G011290	Carg23563	Silver-seed gourd	carlsiB958
Lsi07G011290	CsaV3_3G001030	Cucumber (Chinese Long) v3	cuclsiB250

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G011290	Silver-seed gourd	carlsiB621
Lsi07G011290	Cucurbita maxima (Rimu)	cmalsiB772
Lsi07G011290	Cucurbita moschata (Rifu)	cmolsiB763
Lsi07G011290	Cucurbita pepo (Zucchini)	cpelsiB725