Csa3G005030 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G005030
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	50S ribosomal protein L28; contains IPR001383 (Ribosomal protein L28), IPR026569 (Ribosomal protein L28/L24)
Location	Chr3 : 674342 .. 678312 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAGTATGACCCTCTTGTATACTCTTTATCTTTCTTAGAATCATTGGTTGATTTTTCTCTCTGAATTTGAATACATTTTACTTATTTTCTGAATTCTATGGTGTTAGACCAGTAGAATATGAGTTAAGGCATTAACATCTACTTCTTCTTTCTATGAGCTCTTGCATATTCAAATTTGCATGCCCTCATTGTACTGCAAAAGAGTGAGAGCTCATTGATAATATTATATTACAGAAAGGAAAAACCTCATGAGATGGATTACAAAAGATGTATCCAATTGGAAAGGAAGGAGGAAAGGAATAGCTATAGGGATGGAAGAGGGGAACGTTTACACTAAAAAACTAAATGTTAATTATAACTTATTTTTGCACTGTCTCTCTACTGGGTAAGCTTGGAACACTTTGTTAGAATTTTTTATTTGGAGCTTTGTCTTCGTAGTAAGATTGATAGTTGGTTGATTGAAGGGCTCAACATTAGAGGTTATAGCTCAAAAGGAAACATCTTATGGAGATGTGCTACTCGGTCCCTTTTGAGGTGCATTTGGAAAGAAAGGAGTAGTAGAATTTTTTAAGATAGCTATAATTCTTTTGATTCTTTTTGGACTGTGTTGCAACACAACTTCTTGGTGGAGTACAAATTACACCAAACACTTTTGTAATTATAACCTTTCTATGATATTCAACAACTGGAAGGCGATCATTTTTTGGTTTCTTTTGGGGAGTCTTGTGCCTTGCTCTTAGGTTCTTCTCTTTTGTTATAGGAATATACATGTTTCTTATAAGAAGAAAAATCTGGGATAGTGTAGTTCTTTCTCTTGGAAGATTCAATTGTTTCTTTCTTGTCAATTGATCCATCAGAAGGCTCTTATGAAATCTCCCTTTTAATTTATTGTTTTTTTTCTCTCAGTACCTTTTAGTTGGTGAAGTCTTTTGTAAATCCCCCCAATGGGATCCCATCTTTTATAATTTCACACCGTTGATGAAATCGTTTCTTATCCAAAACAAAAAATCACGGCAGGTGAAGGTACCCTAAATAAATTCATTGCACTTCAAATCATGATTTTTTCTTTTCAAGAAGAGAAGATTGTTGCTTCTAAGTTTTGCTGAAGTTATTTGATAGGACTTGGTCAACATTTTTATTTATCCCACGTATCAAGGGAAGTTTTGACTTTGAGAGCATCCTGTCTCTCCCAATTCTCCTCAGAGAACCACAACAAAATCACAGCCAAAAAGATCCCCTATGTAACAACACTCCCCTCTATGACACCCTCCTCCCTCTACTTGTTACACATTATATTCCATTTTTCTTCTTCACATGCCTGCTCATAGACCATAGTGATTTGGGGCTTATCATTATTGAATTTATTGTTTTTCTGCTCTCCTTCACTTTGTATGAATAGCCACGCGTGCCGATGAAAGCAATGTTCATAGATTGCTGGATCACTAACCATAACTGGAATTGGGTATTCATTGATGTAAGTTTGAAATAACGAATTGTCATGACAGCTGTTTAAGGTGAATTTTATCTTCTTCTTTTTTATGCCTCATTTTGATAAATGTTTGCATTTGGATGTGGGGTAAGCATGAGTTTATTGTGCTTCTAGAACTCTTATACACACTGCTTGATTAGGAAAGTTCTAGAATCAAGTGGAGATTTTATTTTAATCAAATAACGTGTTTTTTATGTCCCGCTCCTATATCAATCCTCATGTATGTGGAAGATCCCTCAGGAAGGATGATTAGGGCATCAGGTGGGATTTAGTGTGTAGGTTTGGCTTCCTAAGGCAACCTTCTATTTGACAACCTAGGTTTGATTGGAGAAACTAACCGGCTTGAACAATGGCTTACCATCACAATTTTCAATCCAAGCTTTCTAGACTTGCTCTTCAAACACAGAACCTGTGGCCCAGATGGTTAGATTTTAAGAAGAGAAAATGAACTTAAGGTTGTGTTACCTTCTAGAGGTAATTAGCTATTGGTAGTGGAGCTTCAGCATTGGTTTGCAAGCACTCACCGTCAATGTCTTAAAAAACTATCGAGGCTTACACCTTGAGGCGCTCGCCTCAAGGCAAGGCTCTAAGTTTTAGTCTCAAGACATACGCCTTTGTTGAATCATAAGAGGTGTACTCTTCTCACAAATGTGGTTTATGCCTTTGGGAAAAGACATGGAAGCTTAAAATCTCTAGCCCCGCCTAGGAAAAATGATAGCAATTTGTCTAATTCTTAAAAAATATTAAGGTTTGAGCTAGGACAATTTGAACTAGGAATATTTTGACATCCTCATCAGCGTTAATATTGCTATTATTAGTGATGATGAAGATGTCCTTTTAGAACTTTTTTTATTAAGTGAAAATTATGGAGGTGAAGTTTCTTTTTGCACTTTTATATAACTATCAATGTTTAGTAATACTTGATCATACCAATTTAGGTTTTGTTGTATTTAATTCATTATTTGAGGCTTACGCCTTATACTGCCTTGAGGCGTCGCCTCTTGGAGAGGAAAAGCCTCAAGGCCGCCTTTAGCCTTTTAAAACATTGCTCACCGTCCTTCCATTTTTTGAACCAATTATTAGATTATTTCTAAGGTTCATTTCTTCTTTTTCATTATATTCATGAGAAGTTGTTTTCTGTTTAAAAATTCGGTTTTCTTTTGCATGGCTTTGTTGGTTTTTGTTGTATTTTTGTAGACTCTTGTGTACATTTCTCGGGTATGCCTCTCTCTCTTATATTCTGATATTTGAGGGTGATATTATAATTTCGTGTACTTCCTTTGTATTGGCTTTATGTTATATAATAAGAGTTTGGTGCCTTTTATTAGTTCTTTTGCTCACAGACATGCATATTGACATATGATCGTATCCCCTTCCTCTTGTATTTCTCTTTAATGTTTCTTGTATTTGGACGTTATACTCTTCTCATTGCATCAATAAAAGGTTCCTTTTTTGTTTTTCGAAGAAAAAAAGGAAACCTTCATATTGACATGTGATCTTATACCGTTTCATATTGTCATGCAATCACTTTTTTTTTTTCAATTTTGGAGTATTTAGCCTTTATGTGTGCTGGTGCTTATAGATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTTAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAATTGCTTACAGGAGACTTTTTCTTCTTCTCAACTTGAGAGTTCAAGCTTTGACTTTTTATCCTCTCTTTCCAAAGATTTGTTTCTTCATTTTTCACTATAACCTTTTGTAGCTTATATTTGTATTTTGTTTAATATATACAGTTAGAAAAGAGAATTGTTTTTGGAAATTGAGATGGGAAATCTTCAAACTTTTTGTTCAATAAGATTAGCCGTAGGCTCTGAGATTTGAAGTTTGTG

mRNA sequence

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTTAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAA

Coding sequence (CDS)

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTTAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAA

Protein sequence

MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSSAKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV*

Homology

[Close]

BLAST of Csa3G005030 vs. Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 4.1e-12
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 1


Query: 30  KKCIPDSKI----VMGRANRGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++N+G+Y G  ++FGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTELG-LFWKSKIETL 135
           +R I +K+T   L+ I K GGID YL K    ++  ELG   WK +   L
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTKEKSARI-KELGPTGWKLRYRVL 159

[Close]

BLAST of Csa3G005030 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 43  ANRGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A +    G+  + GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

[Close]

BLAST of Csa3G005030 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1


Query: 50  GRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++  GG+D 
Sbjct: 9   GKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVEHNGGLDA 68

Query: 110 YLLKTPYHKMDTE 123
           +LL TP  K+ TE
Sbjct: 69  FLLSTPNRKLPTE 80

[Close]

BLAST of Csa3G005030 vs. Swiss-Prot
Match: RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 41/146 (28.08%), Postives = 66/146 (45.21%), Query Frame = 1


Query: 45  RGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKA 104
           + +Y G     GN      G+K+RR W PN   K L+S +L+    + VT+  LR IDK 
Sbjct: 29  QNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKE 88

Query: 105 GGIDEYLLKTPYHKMDTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKE---- 164
           GG+DEYL+K+   ++ + LGL        +  +LG    +      +   ++R+ E    
Sbjct: 89  GGLDEYLVKSTPSRLKS-LGLRGVELRALVLHKLGAKNPILEKLPSDSGAQKRYLEKVKD 148

Query: 165 --LKLSERAARREARRQMYGSSAKLN 185
             LKL+      +  + + G    +N
Sbjct: 149 VVLKLNRSKKLYQQIKSLVGKERSVN 173

[Close]

BLAST of Csa3G005030 vs. Swiss-Prot
Match: RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmB PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.1e-08
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 50  GRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ ++ GN VS    NKSRR W PN+QE  L S  L R +R++++T+ +R I+  GG+D 
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGLDA 68

Query: 110 YLLKTPYHKMDTE 123
            LL  P  +++ +
Sbjct: 69  ALLDIPDARLNQD 80

[Close]

BLAST of Csa3G005030 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 5.2e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 222
           AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 221

[Close]

BLAST of Csa3G005030 vs. TrEMBL
Match: A0A059AZQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 9.6e-93
Identity = 169/215 (78.60%), Postives = 187/215 (86.98%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK+LK+VGENNLAPGVK++L+KCIP S+IVMGRA+RGI+AGRHIRFGN+VS
Sbjct: 1   MAFRGKEMMKKVLKRVGENNLAPGVKETLEKCIPKSQIVMGRAHRGIFAGRHIRFGNQVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GL+WKSKIE LYEELGKMEVVFFSPEDE KFEQ FK+LKL ERAARR+ RRQMYG+S
Sbjct: 121 TEMGLYWKSKIEKLYEELGKMEVVFFSPEDETKFEQGFKQLKLEERAARRDFRRQMYGTS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQ 216
            K     EG      + EE+    +G  H DD  Q
Sbjct: 181 GKEKLAGEGQASDQATQEESPRIGDGHWHADDHDQ 215

[Close]

BLAST of Csa3G005030 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 8.4e-89
Identity = 164/206 (79.61%), Postives = 182/206 (88.35%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSK+VM RA RG+YAGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+MEVVFFSPEDE KFEQ FKELKL+ERAARR+ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEG 207
            KL +I E     +G+      SS+G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

[Close]

BLAST of Csa3G005030 vs. TrEMBL
Match: A0A068VCA3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00009057001 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 7.1e-88
Identity = 161/221 (72.85%), Postives = 189/221 (85.52%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRV 60
           M+FR +EM+K+I+KK+G E NLAPG+KD LKK +P+SK+VMGRA RG+YAGRHI+FGN+V
Sbjct: 1   MSFRSREMVKRIVKKIGGEKNLAPGLKDELKKSVPNSKVVMGRAQRGLYAGRHIQFGNQV 60

Query: 61  SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           S DGGNKSRR+WKPNVQ+KRLFSYILDRHI+VKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SHDGGNKSRRSWKPNVQDKRLFSYILDRHIKVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGS 180
           DTE+GL+WK+KIE LYEELG+MEVVFFSPEDE KFE++F+ELKL +RAARREARR+MYG 
Sbjct: 121 DTEMGLYWKAKIEKLYEELGEMEVVFFSPEDEAKFEEQFRELKLEQRAARREARRKMYGW 180

Query: 181 SAKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 221
           S K   I EG     G+ +EAA   EG S   D H+  VAN
Sbjct: 181 SGKSEAIDEGRADAEGTHQEAARHGEGSSDA-DIHEPQVAN 220

[Close]

BLAST of Csa3G005030 vs. TrEMBL
Match: E0CQ81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14510 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 7.1e-88
Identity = 166/220 (75.45%), Postives = 191/220 (86.82%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFR +EMMKKI+KK+G+N L    ++SLKK +PDSK+VMGRA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRSREMMKKIVKKMGDNKL----EESLKKYVPDSKVVMGRAKRGIYAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+M+VVFFSPEDEVKFEQ FKELKL+ERAARREARR +YG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGEMDVVFFSPEDEVKFEQGFKELKLAERAARREARRHIYGGS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 221
            K  Q++EGG     ++E AA   EG SH  D+ ++ VAN
Sbjct: 181 GKQVQLEEGGADIQETNEVAARVLEGSSH-VDAPERLVAN 215

[Close]

BLAST of Csa3G005030 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family)

HSP 1 Score: 296.2 bits (757), Expect = 1.7e-80
Identity = 143/216 (66.20%), Postives = 169/216 (78.24%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+K+VMGRA RG+YAGRHI++GNRVS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GL+WK+K+E  Y ELG+MEV FF+PEDE K EQ FK+L ++++ ARREARR      
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTF---- 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQ 217
                     +KG G+  +  AS EGG  G +SHQ+
Sbjct: 181 ---------RKKGGGNKGDEEASIEGGG-GSESHQE 202

[Close]

BLAST of Csa3G005030 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 7.5e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 222
           AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 221

[Close]

BLAST of Csa3G005030 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo])

HSP 1 Score: 402.9 bits (1034), Expect = 3.6e-109
Identity = 205/223 (91.93%), Postives = 212/223 (95.07%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVK+SLKK +PDSKIVMGRANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TELGLFWK+KIETLYEELGKMEVVFFSPEDE KFEQRFK+LKLSERAAR+EARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 A-KLNQIKEGGEKGNGSSEEAAASSEGGSHG-DDSHQQWVANV 222
             KLNQIKEGGE  N SSEE AASSEGGSHG DDSHQQWVANV
Sbjct: 181 TNKLNQIKEGGEDTNVSSEE-AASSEGGSHGDDDSHQQWVANV 222

[Close]

BLAST of Csa3G005030 vs. NCBI nr
Match: gi|702438258|ref|XP_010070462.1| (PREDICTED: uncharacterized protein LOC104457224 [Eucalyptus grandis])

HSP 1 Score: 347.8 bits (891), Expect = 1.4e-92
Identity = 169/215 (78.60%), Postives = 187/215 (86.98%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK+LK+VGENNLAPGVK++L+KCIP S+IVMGRA+RGI+AGRHIRFGN+VS
Sbjct: 1   MAFRGKEMMKKVLKRVGENNLAPGVKETLEKCIPKSQIVMGRAHRGIFAGRHIRFGNQVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GL+WKSKIE LYEELGKMEVVFFSPEDE KFEQ FK+LKL ERAARR+ RRQMYG+S
Sbjct: 121 TEMGLYWKSKIEKLYEELGKMEVVFFSPEDETKFEQGFKQLKLEERAARRDFRRQMYGTS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQ 216
            K     EG      + EE+    +G  H DD  Q
Sbjct: 181 GKEKLAGEGQASDQATQEESPRIGDGHWHADDHDQ 215

[Close]

BLAST of Csa3G005030 vs. NCBI nr
Match: gi|747070067|ref|XP_011081840.1| (PREDICTED: uncharacterized protein LOC105164778 [Sesamum indicum])

HSP 1 Score: 339.0 bits (868), Expect = 6.4e-90
Identity = 167/221 (75.57%), Postives = 191/221 (86.43%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRV 60
           MAFR +EMMKKILKKVG E NLAPGVK+ LKK +PDSK+VMGRA+RG+YAGRHI+FGNRV
Sbjct: 1   MAFRSREMMKKILKKVGGEQNLAPGVKEQLKKSVPDSKVVMGRAHRGLYAGRHIQFGNRV 60

Query: 61  SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR WKPNVQEKRLFSYILDRHIRVKV+THALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRTWKPNVQEKRLFSYILDRHIRVKVSTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGS 180
           DTE+GLFWK+KIE +Y++LG+MEVVFFSPEDE  FE++FKELKL  +AARREARR+MYGS
Sbjct: 121 DTEMGLFWKTKIEKMYQDLGEMEVVFFSPEDEANFEEQFKELKLEMKAARREARRKMYGS 180

Query: 181 SAKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 221
           +A    IK+G + G  S  E A+ SE GS   D H+  VAN
Sbjct: 181 TATQESIKDGEDVGEAS--EGASRSEDGSSHADLHEPMVAN 219

[Close]

BLAST of Csa3G005030 vs. NCBI nr
Match: gi|1009136027|ref|XP_015885311.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 339.0 bits (868), Expect = 6.4e-90
Identity = 163/200 (81.50%), Postives = 182/200 (91.00%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMK I+KKVGE N+APGVK+SLKKCIPDSKIVM RA RGI+AGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKNIMKKVGEKNMAPGVKESLKKCIPDSKIVMNRAKRGIFAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYSKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GLFWK+KIE LYEELG+ EVVFFSPEDE KFEQ FKEL+L+E+AA++EAR+QM+G S
Sbjct: 121 TEMGLFWKAKIEKLYEELGQKEVVFFSPEDETKFEQEFKELRLNEKAAQKEARKQMFGWS 180

Query: 181 AKLNQIKEGGEKGNGSSEEA 201
            KL Q++EG  K   + EEA
Sbjct: 181 GKLKQMEEGEAKNEETKEEA 200

The following BLAST results are available for this feature:

BLAST of Csa3G005030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM24_YEAST	4.1e-12	39.09	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
RL28_MAGMM	3.3e-09	43.66	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
RL28_GLUDA	5.6e-09	42.47	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
RM24_SCHPO	1.2e-08	28.08	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
RL28_RHOCS	6.1e-08	39.73	50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]

BLAST of Csa3G005030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1P8_CUCSA	5.2e-123	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1	[more]
A0A059AZQ3_EUCGR	9.6e-93	78.60	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1	[more]
A0A0D2PMQ4_GOSRA	8.4e-89	79.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1	[more]
A0A068VCA3_COFCA	7.1e-88	72.85	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00009057001 PE=3 SV=1	[more]
E0CQ81_VITVI	7.1e-88	75.45	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14510 PE=3 SV=...	[more]

BLAST of Csa3G005030 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31460.1	1.7e-80	66.20	Ribosomal L28 family	[more]

BLAST of Csa3G005030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456779\|ref\|XP_004146126.1\|	7.5e-123	100.00	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus]	[more]
gi\|659095444\|ref\|XP_008448584.1\|	3.6e-109	91.93	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo]	[more]
gi\|702438258\|ref\|XP_010070462.1\|	1.4e-92	78.60	PREDICTED: uncharacterized protein LOC104457224 [Eucalyptus grandis]	[more]
gi\|747070067\|ref\|XP_011081840.1\|	6.4e-90	75.57	PREDICTED: uncharacterized protein LOC105164778 [Sesamum indicum]	[more]
gi\|1009136027\|ref\|XP_015885311.1\|	6.4e-90	81.50	PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001383	Ribosomal_L28
IPR026569	Ribo_L28/L24

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006457	protein folding
biological_process	GO:0006950	response to stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU092799	cucumber EST collection version 3.0	transcribed_cluster
CU103361	cucumber EST collection version 3.0	transcribed_cluster
CU120052	cucumber EST collection version 3.0	transcribed_cluster
CU163012	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G005030.1	Csa3G005030.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU092799	CU092799	transcribed_cluster
CU163012	CU163012	transcribed_cluster
CU103361	CU103361	transcribed_cluster
CU120052	CU120052	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 40..110 score: 14
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 23..177 score: 1.9
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 48..103 score: 1.8
None	No IPR available	GENE3D	G3DSA:2.30.170.40		coord: 44..118 score: 2.1
None	No IPR available	unknown	SSF143800	L28p-like	coord: 43..119 score: 2.55

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G005030	Cla008867	Watermelon (97103) v1	cuwmB200
Csa3G005030	MELO3C013792	Melon (DHL92) v3.5.1	cumeB243
Csa3G005030	ClCG10G000990	Watermelon (Charleston Gray)	cuwcgB189
Csa3G005030	Lsi07G011290	Bottle gourd (USVL1VR-Ls)	culsiB228
Csa3G005030	MELO3C013792.2	Melon (DHL92) v3.6.1	cumedB224
Csa3G005030	Cla97C10G185610	Watermelon (97103) v2	cuwmbB181
Csa3G005030	BhiUN179G4	Wax gourd	cuwgoB337
Csa3G005030	CSPI03G00990	Wild cucumber (PI 183967)	cpicuB120
Csa3G005030	Cucsa.322380	Cucumber (Gy14) v1	cgycuB458
Csa3G005030	CmaCh16G012200	Cucurbita maxima (Rimu)	cmacuB326
Csa3G005030	CmoCh16G012630	Cucurbita moschata (Rifu)	cmocuB316
Csa3G005030	Cp4.1LG14g10040	Cucurbita pepo (Zucchini)	cpecuB212
Csa3G005030	CsGy3G000940	Cucumber (Gy14) v2	cgybcuB109
Csa3G005030	Carg19495	Silver-seed gourd	carcuB0462
Csa3G005030	Carg23563	Silver-seed gourd	carcuB1064

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G005030	Silver-seed gourd	carcuB0701
Csa3G005030	Cucurbita maxima (Rimu)	cmacuB817
Csa3G005030	Cucurbita moschata (Rifu)	cmocuB809
Csa3G005030	Cucurbita pepo (Zucchini)	cpecuB863