CmaCh16G012200 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G012200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L28
Location	Cma_Chr16 : 9225765 .. 9228658 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAGTGGTGATGAATAGGGCGAAGCGCGGCATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTGTCAGTGAAGACGGTGGCAATAAGTATGAACCTCTGTTCTTTCCTTTATTTTTTTCAAAATCTTGCGTCGTTTCTCTCTGAATTCGGTGGCGTGAAACCATTAGTCCCTTTCCCAATATGAGAATAGCTTAACGGTTAAATGATATCATGTTAAGTCCAAACCGCTAGGTGATATTGTTCTCTTTGGACTTTCCCTTTTGAGCTTCCCCTCAAGGTTTTAAGATGCGTCTACTCGGGAGAGGTTTCCACACCCTTGTAAGAAATGTTTCATTCCCCTCTCCAACCAATGTGGGATCTCACAATCCACTCCCTTGGAGGTCAGCATCCTTGCTGACACACTGCCCAGTGTCTGGCTCTGATACCATTTGTAATAGCCTAAGTCCACCGCTAACAAATATTGTCCTCTTTGAGATTTCCCTACTGGGCTTCCCCTCAAGGTTTTAAAATGTGTCTACTATGGAGAGGTTTCCACACCCTTGTAAGAAATGTTTCATTCCCCTCTCCGATCAATGTGGGATCTCACAATCCACCCCCTTGGAGGTCAGCGTTTTCACTGACACACCGCCTAGTGTCTGACTTTAATACCATTTGTAATAGCCTAAGCCCACCGCTAACAGATCTTGTCTTCTTTGAGATTTCCCTGCTGTGCTTCCTCTCAAGGTTTTAAAATGTGTCTACTAGGGAGAGGTTTCCACACCCTTGTAAGGAATGTTTCGTTTCCCTCTCCAACCAATGTGGGATCTCATAATCCACCCCCTTGGAGGTTAGCGTCCTAGCTGACACACGGCCCGATGTCTGGCTCTTATACCATTTGTAATAGCCTAAGCCCACCGCTAGCAGATATTGTCCTATTTGGGATTTCTTTGTTGGACTTCCCCTCAAGGGTTTAAAACGCGTCTACTAGGGAGAAGTTTTCACACCCTTATAAGGAATGTTTCGTTCTCCTCTTCAACCAATGTGGGATTTCACACATCAACCTCTACCCTTTTTTTTCTTCGAACTAGTTCAAATTTCCACACCCACACCCAAAAAAAAAAAAATAATAATAATAAGAGAGAGATCTTTAGTCCCTTTTAATTGCATAGCTTGATTTATTGTTTTTTACAATTGCAAGTGAAGGCGCCATAAATGAATAAATTCATAGCATCAAAGACATTTGGCAGAAAATTCTTGCTGTTACTATTTCAAAACTTACGTCTTTGTGTTCATGCTTCTGATTTTTTCTTATCTGTTTGTTACTGCCTTCTTGATGAGTGTTTGGATTTTGGATGCGGGGTTAGCATATGAGTTAATTGTTCTGCTAAAACTCTTATCCACACTACTTGATTACGAATTGTAGTTAGAATCAAGTGGAGATTTTGTAATTGCTTTGCTCTGAGGTTTTTATGCCCCACTCCTTTTGTCATTCTAAGAACATGTGGAGGAACCCTAAGATAGGGTGATTGGGGGCGTAAAGTTGGGCTTCAGCGCGTGTCTCGCTTCCTAAGCCCAACAGCCCCGACCCTCTGTTTGACATCCCAAGTTCAATTAGAGAAACCAACTGACTCGAACAACATCCTACTATTCAACCCCTCCATCGATCACTATTTCAACCCAAGCTTCCTAAACTTGTGCCCCCAAATACAGAACCTGTGAACCCAAATGATCCATTAGAAGTTGGGAAGAGAAAATGTACTTATAGTTGTGTTTCCTTCTGTGTGTGAACGTTATTGGCTTTTGCTGTATATTTGTAGCCTTATATTTACATGTCAAGGGTATGCCTCTCTTGCTCTTGTATTCAGAAATTCGAGAGCACAATATAATAATTTCGTTTTCTTCCTTTGTTTCGGCCTTATGTCATATAAGGGTTCGGTGCGTTTTACGATTATTTACGATTATTTTGTCATGCTATCAATTTTCAATTTTGGAGTATTAGCCGTAATGTGCTGGTGCTTATAGGTCAAGAAGGAGCTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGACGAGAAGACGGATGTATGGTAGTTCGACCCAACGTGATCAGATCGAAGAGGGACAAGCAGACCGCGTTGGATCTAGTGAGGAAGTTGCAGGTTCCGAAGGAGGCTCCCATGGTGATGATATGGTCCACAGCAATGGGTTGCCAACGCCTAATTAATTATAGGACTTTTTTTCCAACCAAGGAGTTCAAGCCTCGACTCGTTCCCTACCTTTTCCAAGATTTGTTTCCTCTCATTTTCACTTGGTTTAATGTTTAATGTATTCAGATAGAAATGAGAATTGTTTTTTGGAAATTGAGATGTGAAATCTTAGAACCATTTATTGTTCAATAAGATTGGCTTAATGTATGAAAAAGATCGTCTCATATTTTGTACTACCCTATCACTCAGAAGATGGGGATGGGGAAGGCTTTTGGTCCTTCTCTTTCCATGTACATCTCTTTTTCTATATCCATCGCTACATGATCA

mRNA sequence

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAGTGGTGATGAATAGGGCGAAGCGCGGCATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTGTCAGTGAAGACGGTGGCAATAAGTCAAGAAGGAGCTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGACGAGAAGACGGATGTATGGTAGTTCGACCCAACGTGATCAGATCGAAGAGGGACAAGCAGACCGCGTTGGATCTAGTGAGGAAGTTGCAGGTTCCGAAGGAGGCTCCCATGGTGATGATATGGTCCACAGCAATGGGTTGCCAACGCCTAATTAATTATAGGACTTTTTTTCCAACCAAGGAGTTCAAGCCTCGACTCGTTCCCTACCTTTTCCAAGATTTGTTTCCTCTCATTTTCACTTGGTTTAATGTTTAATGTATTCAGATAGAAATGAGAATTGTTTTTTGGAAATTGAGATGTGAAATCTTAGAACCATTTATTGTTCAATAAGATTGGCTTAATGTATGAAAAAGATCGTCTCATATTTTGTACTACCCTATCACTCAGAAGATGGGGATGGGGAAGGCTTTTGGTCCTTCTCTTTCCATGTACATCTCTTTTTCTATATCCATCGCTACATGATCA

Coding sequence (CDS)

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAGTGGTGATGAATAGGGCGAAGCGCGGCATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTGTCAGTGAAGACGGTGGCAATAAGTCAAGAAGGAGCTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGACGAGAAGACGGATGTATGGTAGTTCGACCCAACGTGATCAGATCGAAGAGGGACAAGCAGACCGCGTTGGATCTAGTGAGGAAGTTGCAGGTTCCGAAGGAGGCTCCCATGGTGATGATATGGTCCACAGCAATGGGTTGCCAACGCCTAATTAA

Protein sequence

MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSSTQRDQIEEGQADRVGSSEEVAGSEGGSHGDDMVHSNGLPTPN

Homology

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BLAST of CmaCh16G012200 vs. Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 30  KKCIPDSKV----VMNRAKRGIFAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G++ G  +QFGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLK 114
           +R I +K+T   L+ I K GGID YL K
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTK 138

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BLAST of CmaCh16G012200 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-10
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1


Query: 43  AKRGIFAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A++    G+  Q GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

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BLAST of CmaCh16G012200 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-09
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 43  AKRGIFAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDAFLLSTPNRKLPTE 80

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BLAST of CmaCh16G012200 vs. Swiss-Prot
Match: RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 41  NRAKRGIFAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRC 100
           ++ ++ ++ G   + GN      G+K+RR W PN   K L+S +L+    + VT+  LR 
Sbjct: 25  SKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRT 84

Query: 101 IDKAGGIDEYLLKT 115
           IDK GG+DEYL+K+
Sbjct: 85  IDKEGGLDEYLVKS 98

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BLAST of CmaCh16G012200 vs. Swiss-Prot
Match: RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmB PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 50  GRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +Q GN VS    NKSRR W PN+QE  L S  L R +R++++T+ +R I+  GG+D 
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGLDA 68

Query: 110 YLLKTPYHKMDTEIGLFWKAKIEKLYE 137
            LL  P  +++ +     K +I+K  E
Sbjct: 69  ALLDIPDARLNQDARRV-KKQIQKAIE 93

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BLAST of CmaCh16G012200 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 3.2e-96
Identity = 182/212 (85.85%), Postives = 196/212 (92.45%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VM RA RGI+AGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180
           TE+GLFWK+KIE LYEELG+MEVVFFSPEDE KFEQ F++LKLSERAAR+E RR+MYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TQRDQIEEGQADRVGSSEE-VAGSEGGSHGDD 212
            + +QI+EG     GSSEE  A SEGGSHGDD
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDD 212

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BLAST of CmaCh16G012200 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.2e-87
Identity = 169/214 (78.97%), Postives = 191/214 (89.25%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSKVVMNRAKRG++AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180
           TE+GLFWKAKIEK+YEELGQMEVVFFSPEDEAKFEQGF++LKL+ERAAR++ RR+MYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TQRDQIEEGQA-DRVGSSEEVAGSEGGSHGDDMV 214
            + ++IE  ++ D  G++      E  S GD +V
Sbjct: 181 GKLEEIENRRSHDGTGNA-----GEDSSDGDVLV 209

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BLAST of CmaCh16G012200 vs. TrEMBL
Match: V4UM17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.2e-87
Identity = 159/202 (78.71%), Postives = 187/202 (92.57%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRV 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS++VMNRAKRG+FAG+HIQFGNRV
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR+WKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGS 180
           DTE+GL+WK KIEKLYEELGQ EV FF+PE+EAK EQ F+D+KL++RAAR+E RR+MYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STQRDQIEEGQADRVGSSEEVA 202
           S+++ QIE+G AD   ++EE A
Sbjct: 181 SSKQKQIEQGSADTQETAEEAA 202

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BLAST of CmaCh16G012200 vs. TrEMBL
Match: A0A067FV36_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.2e-87
Identity = 159/202 (78.71%), Postives = 187/202 (92.57%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRV 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS++VMNRAKRG+FAG+HIQFGNRV
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR+WKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGS 180
           DTE+GL+WK KIEKLYEELGQ EV FF+PE+EAK EQ F+D+KL++RAAR+E RR+MYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STQRDQIEEGQADRVGSSEEVA 202
           S+++ QIE+G AD   ++EE A
Sbjct: 181 SSKQKQIEQGSADTQETAEEAA 202

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BLAST of CmaCh16G012200 vs. TrEMBL
Match: A0A059AZQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 7.9e-87
Identity = 165/212 (77.83%), Postives = 186/212 (87.74%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60
           MAFRGKEMMKK+LK+VGENNLAPGVK++L+KCIP S++VM RA RGIFAGRHI+FGN+VS
Sbjct: 1   MAFRGKEMMKKVLKRVGENNLAPGVKETLEKCIPKSQIVMGRAHRGIFAGRHIRFGNQVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180
           TE+GL+WK+KIEKLYEELG+MEVVFFSPEDE KFEQGF+ LKL ERAAR++ RR+MYG+S
Sbjct: 121 TEMGLYWKSKIEKLYEELGKMEVVFFSPEDETKFEQGFKQLKLEERAARRDFRRQMYGTS 180

Query: 181 TQRDQIEEGQA-DRVGSSEEVAGSEGGSHGDD 212
            +     EGQA D+    E     +G  H DD
Sbjct: 181 GKEKLAGEGQASDQATQEESPRIGDGHWHADD 212

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BLAST of CmaCh16G012200 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family)

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-76
Identity = 142/208 (68.27%), Postives = 166/208 (79.81%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60
           MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+KVVM RAKRG++AGRHIQ+GNRVS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRR--RMYG 180
           TE+GL+WK K+E  Y ELGQMEV FF+PEDEAK EQGF+DL ++++ AR+E RR  R  G
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTFRKKG 180

Query: 181 SSTQRDQIEEGQADRVGSSEEVAGSEGG 207
              + D  EE   +  G SE     + G
Sbjct: 181 GGNKGD--EEASIEGGGGSESHQEDDNG 206

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BLAST of CmaCh16G012200 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 359.4 bits (921), Expect = 4.6e-96
Identity = 182/212 (85.85%), Postives = 196/212 (92.45%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VM RA RGI+AGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180
           TE+GLFWK+KIE LYEELG+MEVVFFSPEDE KFEQ F++LKLSERAAR+E RR+MYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TQRDQIEEGQADRVGSSEE-VAGSEGGSHGDD 212
            + +QI+EG     GSSEE  A SEGGSHGDD
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDD 212

[Close]

BLAST of CmaCh16G012200 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo])

HSP 1 Score: 358.6 bits (919), Expect = 7.8e-96
Identity = 183/215 (85.12%), Postives = 196/215 (91.16%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVK+SLKK +PDSK+VM RA RGI+AGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180
           TE+GLFWKAKIE LYEELG+MEVVFFSPEDEAKFEQ F+DLKLSERAARKE RR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 TQR-DQIEEGQADRVGSSEEVAGSEGGSHGDDMVH 215
           T + +QI+EG  D   SSEE A SEGGSHGDD  H
Sbjct: 181 TNKLNQIKEGGEDTNVSSEEAASSEGGSHGDDDSH 215

[Close]

BLAST of CmaCh16G012200 vs. NCBI nr
Match: gi|823122027|ref|XP_012469124.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii])

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-87
Identity = 169/214 (78.97%), Postives = 191/214 (89.25%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSKVVMNRAKRG++AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180
           TE+GLFWKAKIEK+YEELGQMEVVFFSPEDEAKFEQGF++LKL+ERAAR++ RR+MYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TQRDQIEEGQA-DRVGSSEEVAGSEGGSHGDDMV 214
            + ++IE  ++ D  G++      E  S GD +V
Sbjct: 181 GKLEEIENRRSHDGTGNA-----GEDSSDGDVLV 209

[Close]

BLAST of CmaCh16G012200 vs. NCBI nr
Match: gi|567916350|ref|XP_006450181.1| (hypothetical protein CICLE_v10009422mg [Citrus clementina])

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-87
Identity = 159/202 (78.71%), Postives = 187/202 (92.57%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRV 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS++VMNRAKRG+FAG+HIQFGNRV
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR+WKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGS 180
           DTE+GL+WK KIEKLYEELGQ EV FF+PE+EAK EQ F+D+KL++RAAR+E RR+MYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STQRDQIEEGQADRVGSSEEVA 202
           S+++ QIE+G AD   ++EE A
Sbjct: 181 SSKQKQIEQGSADTQETAEEAA 202

[Close]

BLAST of CmaCh16G012200 vs. NCBI nr
Match: gi|1009136027|ref|XP_015885311.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-87
Identity = 163/199 (81.91%), Postives = 183/199 (91.96%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60
           MAFRGKEMMK I+KKVGE N+APGVK+SLKKCIPDSK+VMNRAKRGIFAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKNIMKKVGEKNMAPGVKESLKKCIPDSKIVMNRAKRGIFAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYSKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180
           TE+GLFWKAKIEKLYEELGQ EVVFFSPEDE KFEQ F++L+L+E+AA+KE R++M+G S
Sbjct: 121 TEMGLFWKAKIEKLYEELGQKEVVFFSPEDETKFEQEFKELRLNEKAAQKEARKQMFGWS 180

Query: 181 TQRDQIEEGQADRVGSSEE 200
            +  Q+EEG+A    + EE
Sbjct: 181 GKLKQMEEGEAKNEETKEE 199

The following BLAST results are available for this feature:

BLAST of CmaCh16G012200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM24_YEAST	1.2e-11	40.91	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
RL28_MAGMM	2.9e-10	45.07	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
RL28_GLUDA	2.5e-09	40.00	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
RM24_SCHPO	1.2e-08	37.84	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
RL28_RHOCS	1.6e-08	39.08	50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]

BLAST of CmaCh16G012200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1P8_CUCSA	3.2e-96	85.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1	[more]
A0A0D2PMQ4_GOSRA	1.2e-87	78.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1	[more]
V4UM17_9ROSI	1.2e-87	78.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1	[more]
A0A067FV36_CITSI	1.2e-87	78.71	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1	[more]
A0A059AZQ3_EUCGR	7.9e-87	77.83	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1	[more]

BLAST of CmaCh16G012200 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31460.1	1.1e-76	68.27	Ribosomal L28 family	[more]

BLAST of CmaCh16G012200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456779\|ref\|XP_004146126.1\|	4.6e-96	85.85	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus]	[more]
gi\|659095444\|ref\|XP_008448584.1\|	7.8e-96	85.12	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo]	[more]
gi\|823122027\|ref\|XP_012469124.1\|	1.7e-87	78.97	PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii]	[more]
gi\|567916350\|ref\|XP_006450181.1\|	1.7e-87	78.71	hypothetical protein CICLE_v10009422mg [Citrus clementina]	[more]
gi\|1009136027\|ref\|XP_015885311.1\|	1.7e-87	81.91	PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001383	Ribosomal_L28
IPR026569	Ribo_L28/L24

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012200.1	CmaCh16G012200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 42..110 score: 14
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 23..177 score: 1.8
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 47..103 score: 5.1
None	No IPR available	GENE3D	G3DSA:2.30.170.40		coord: 43..118 score: 1.0
None	No IPR available	unknown	SSF143800	L28p-like	coord: 43..119 score: 1.61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G012200	Cucsa.322380	Cucumber (Gy14) v1	cgycmaB0887
CmaCh16G012200	Cla008867	Watermelon (97103) v1	cmawmB292
CmaCh16G012200	Csa3G005030	Cucumber (Chinese Long) v2	cmacuB326
CmaCh16G012200	MELO3C013792	Melon (DHL92) v3.5.1	cmameB291
CmaCh16G012200	ClCG10G000990	Watermelon (Charleston Gray)	cmawcgB284
CmaCh16G012200	CSPI03G00990	Wild cucumber (PI 183967)	cmacpiB332
CmaCh16G012200	CmoCh16G012630	Cucurbita moschata (Rifu)	cmacmoB323
CmaCh16G012200	Lsi07G011290	Bottle gourd (USVL1VR-Ls)	cmalsiB324
CmaCh16G012200	Cp4.1LG14g10040	Cucurbita pepo (Zucchini)	cmacpeB345
CmaCh16G012200	MELO3C013792.2	Melon (DHL92) v3.6.1	cmamedB342
CmaCh16G012200	CsaV3_3G001030	Cucumber (Chinese Long) v3	cmacucB0380
CmaCh16G012200	Cla97C10G185610	Watermelon (97103) v2	cmawmbB337
CmaCh16G012200	BhiUN179G4	Wax gourd	cmawgoB0450
CmaCh16G012200	CsGy3G000940	Cucumber (Gy14) v2	cgybcmaB339
CmaCh16G012200	Carg23563	Silver-seed gourd	carcmaB1453
CmaCh16G012200	Carg19495	Silver-seed gourd	carcmaB0596

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G012200	Cucurbita maxima (Rimu)	cmacmaB357
CmaCh16G012200	Cucurbita moschata (Rifu)	cmacmoB344
CmaCh16G012200	Cucurbita pepo (Zucchini)	cmacpeB363
CmaCh16G012200	Silver-seed gourd	carcmaB0956