Cucsa.322380 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.322380
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ribosomal L28 family
Location	scaffold03080 : 2144838 .. 2150581 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTCTCTGCCTTTCATCTTCTTCACCAAAGGTTGCAGTTGCTTCGACGCCGCCGCACCCCGTGATCTACTGAACGCCGCTCGTCGCTGTCCGTGGTCACTAGCGTTCTCTCTCTTCCTCTCTACCCGTTTCTCTTTACTAGTCTTCACCGCCACCGCTGCTTGACACCGTCTGTGGGTCGCGGGCTGCCGTTTAACTGTCAGAATCTTGGTTCTTGCATTTTTTTTtGGTGGTAAGGCTTGATATTTTTGTGGGTTTTTGTTGAATTTTTACCCAACAGTTAGTCGATTGTGTTTATCCATACATTGGTTCCTAGATTTGAGTTCTAAAAAAaCGGGAGTGGGTTCTTGTGTTATCGGAGACTCTTTGGTTATGTGTTGGGGACTTTTTGTAGCGGATATTGGAATTTGAAGTGGTATTGAGTTAAATAGTAATTCGTTGAATGTTTAGGTGGTTCTATACTTTGCTTAGGAGGGAAGGGCTTGTTAGCTTGTAATACATTGTTTTTGGTTCTAACTTTTAAGTGACTTATTACTGGTTTTCCCTCGATTCTAAGCTGATGTTAAAGATGTTGATGGCTAAACACGATTCTAGTATAATGGATTCAATTATTATGCTACTTTAGGGAGTTTTGGAGTTATGCTATGGAAGTTATGATACTATGCGTATCTGTTGCTATGTTTGATTGATGGACTCTTGTTCTGAATAACTCAGGAGTTAGGTTCTAAAATATGAATATGTGACTGTGATTATGTTGGAATGATGGTGATTGCAAATCATTTTAACGATGTTTTGATGACCTTTTGAGGATCACTACTTATGATTATGTTTGGTGACTTGTCAAGGATTTCTACCTACAAGCATGCCTTTGGGTTCGCCCTTATGCCTTTGTTTACAACTATGTCGGGATGCACATAGTTTTGTTAGGAATGGTTAACAGGTACATCTAGTGGGTCTAATAATGGGTCACTTGTTGAGTATTCTTATACTTGTCATTTTCAAAGGCAAGAACAAACCAACGAATGTCAAGAAGAATCTGTGATTGAGCCTATTGACGTGGCTTCTGCATACATTTTAAAAaTATTTATATTTTAAAAAaTTTtACAAGTTTTTTGGTTGTTTAATTATTTATTTTTTAAAATTATTTGAGCTTAGATTTAGGGGTACCCTGAACGATGATTTATTGAATTTGTTTCTGAAACTTTACTTATTAAAACAATTTTGTTTCATTTAGTTGATTTTGGCCAGAAATATATTTTTAAGCTTATACATGCATGAAGTAACATCCTTGGCATGTTGGAAATATGGGACGTTACAAATGGCATCATATCCGATTTCCGCCTGATTCAACGACATATTCATTGTGTTTTTCCATTCTGCTGATAGATTTTCTTTCTTTTGTGAAGGTCTTTTTGCTGATGGGTTTTTGTGTTGCTTCTTAGGCATTTACTGAACGAAGGACTGAAACAAACTAATGGCTGATGAAAACTTCATTTCTTCTCAAATCCTGCTGCTTGAAATATAGTACCCAACCTGTACAGACTGGAATTTCATCGAGCTCAATTTTCTTTCTGTAGAAGCTTGTTGGCAGTAATTCAAGCACCTTGCTGCAGATTGTTGTACTTCTGCTCCTATTTTTGGCATTACGGTTGATTCTACAAGAGAGAGAGTCCATAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAGTATGACCCTCTTGTATACTCTTTATCTTTCTTAGAATCATTGGTTGATTTTTCTCTCTGAATTTGAATACATTTTACTTATTTTCTGAATTCTATGGTGTTAGACCAGTAGAATATGAGTTAAGGCATTAACATCTACTTCTTCTTTCTATGAGCTCTTGCATATTCAAATTTGCATGCCCTCATTGTACTGCAAAAGAGTGAGAGCTCATTGATAATATTATATTACAGAAAGGAAAAACCTCATGAGATGGATTACAAAAGATGTATCCAATTGGAAAGGAAGGAGGAAAGGAATAGCTATAGGGATGGAAGAGGGGAACGTTTACACTAAAAAaCTAAATGTTAATTATAACTTATTTTTGCACTGTCTCTCTACTGGGTAAGCTTGGAACACTTTGTTAGAATTTTTTATTTGGAGCTTTGTCTTCGTAGTAAGATTGATAGTTGGTTGATTGAAGGGCTCAACATTAGAGGTTATAGCTCAAAAGGAAACATCTTATGGAGATGTGCTACTCGGTCCCTTTTGAGGTGCATTTGGAAAGAAAGGAGTAGTAGAATTTTTTAAGATAGCTATAATTCTTTTGATTCTTTTTGGACTGTGTTGCAACACAACTTCTTGGTGGAGTACAAATTACACCAAACACTTTTGTAATTATAACCTTTCTATGATATTCAACAACTGGAAGGCGATCATTTTTTGGTTtCTTTTGGGGAGTCTTGTGCCTTGCTCTTAGGTTCTTCTCTTTTGTTATAGGAATATACATGTTTCTTATAAGAAGAAAAATCTGGGATAGTGTAGTTCTTTCTCTTGGAAGATTCAATTGTTTCTTTCTTGTCAATTGATCCATCAGAAGGCTCTTATGAAATCTCCCTTTTAATTTATTGTTTTTTttCTCTCAGTACCTTTTAGTTGGTGAAGTCTTTTGTAAATCCCCCcAATGGGATCCCATCTTTTATAATTTCACACCGTTGATGAAATCGTTTCTTATCCAAAACAAAAAaTCACGGCAGGTGAAGGTACCCTAAATAAATTCATTGCACTTCAAATCATGATTTTTTCTTTTCAAGAAGAGAAGATTGTTGCTTCTAAGTTTTGCTGAAGTTATTTGATAGGACTTGGTCAACATTTTTATTTATCCCACGTATCAAGGGAAGTTTTGACTTTGAGAGCATCCTGTCTCTCCCAATTCTCCTCAGAGAACCACAACAAAATCACAGCCAAAAAGATCCCCTATGTAACAACACTCCCCTCTATGACACCCTCCTCCCTCTACTTGTTACACATTATATTCCATTTTTCTTCTTCACATGCCTGCTCATAGACCATAGTGATTTGGGGCTTATCATTATTGAATTTATTGTTTTTCTGCTCTCCTTCACTTTGTATGAATAGCCACGCGTGCCGATGAAAGCAATGTTCATAGATTGCTGGATCACTAACCATAACTGGAATTGGGTATTCATTGATGTAAGTTTGAAATAACGAATTGTCATGACAGCTGTTTAAGGTGAATTTTATCTTCTTCTTTTTTATGCCTCATTTTGATAAATGTTTGCATTTGGATGCGGGGTAAGCATGAGTTTATTGTGCTTCTAGAACTCTTATACACACTGCTTGATTAGGAAAGTTCTAGAATCAAGTGGAGATTTTATTTTAATCAAATAACGTGTTTTTtATGTCCCGCTCCTATATCAATCCTCATGTATGTGGAAGATCCCTCAGGAAGGATGATTAGGGCATCAGGTGGGATTTAGTGTGTAGGTTTGGCTTCCTAAGGCAACCTTCTATTTGACAACCTAGGTTTGATTGGAGAAACTAACCGGCTTGAACAATGGCTTACCATCACAATTTTCAATCCAAGCTTTCTAGACTTGCTCTTCAAACACAGAACCTGTGGCCCAGATGGTTAGATTTTAAGAAGAGAAAATGAACTTAAGGTTGTGTTACCTTCTAGAGGTAATTAGCTATTGGTAGTGGAGCTTCAGCATTGGTTTGCAAGCACTCACCGTCAATGTCTTAAAAAACTATCGAGGCTTACACCTTGAGGCGCTCGCCTCAAGGCAAGGCTCTAAGTTTTAGTCTCAAGACATACGCCTTTGTTGAATCATAAGAGGTGTACTCTTCTCACAAATGTGGCTTATGCCTTTGGGAAAAGACATGGAAGCTTAAAATCTCTAGCCCCGCCTAGGAAAAATGATAGCAATTTGTCTAATTCTTAAAAAATATTAAGGTTTGAGCTAGGACAATTTGAACTAGGAATATTTTGACATCCTCATCAGCGTTAATATTGCTATTATTAGTGATGATGAAGATGTCCTTTTAGAACTTTTTTTATTAAGTGAAAATTATGGAGGTGAAGTTTCTTTTTGCACTTTTATATAACTATCAATGTTTAGTAATACTTGATCATACCAATTTAGGTTTTGTTGTATTTAATTCATTATTTGAGGCTTACGCCTTATACTGCCTTGAGGCGTCGCCTCTTGGAGAGGAAAAGCCTCAAGGCCGCCTTTAGCCTTTTAAAACATTGCTCACCGTCCTTCCATTTTTTGAACCAATTATTAGATTATTTCTAAGGTTCATTTCTTCTTTTTCATTATATTCATGAGAAGTTGTTTTCTGTTTAAAAATTCGGTTTTCTTTTGCATGGCTTTGTTGGTTTTTGTTGTATTTTtGTAGACTCTTGTGTACATTTCTCGGGTATGCCTCTCTCTCTTATATTCTGATATTTGAGGGTGATATTATAATTTCGTGTACTTCCTTTGTATTGGCTTTATGTTATATAATAAGAGTTTGGTGCCTTTTATTAGTTCTTTTGCTCACAGACATGCATATTGACATATGATCGTATCCCCTTCCTCTTGTATTTCTCTTTAATGTTTCTTGTATTTGGACGTTATACTCTTCTCATTGCATCAATAAAAGGTTCCTTTTTtGTTTTtCGAAGAAAAAAaGGAAACCTTCATATTGACATGTGATCTTATACCGTTTCATATTGTCATGCAATCACTTTTTTTTTtCAATTTTGGAGTATTTAGCCTTTATGTGTGCTGGTGCTTATAGATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTtAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAATTGCTTACAGGAGACTTTTTCTTCTTCTCAACTTGAGAGTTCAAGCTTTGACTTTTTATCCTCTCTTTCCAAAGATTTGTTTCTTCATTTTTCACTATAACCTTTTGTAGCTTATATTTGTATTTTGTTTAATATATACAGTTAGAAAaGAGAATTGTTTTTGGAAATTGAGATGGGAAATCTTCAAACTTTTTGTTCAATAAGATTAGCCGTAGGCTCTGAGATTTGAAGTTTGTGACAGTCTTTTACAAGTAGAACGTCCGATCTCCATTCTCAAGGCTGTTTCATTCTCACAGAGTGTGTGTATATATATATATATAAAGTTAATTTTTATA

mRNA sequence

CCCTCTCTGCCTTTCATCTTCTTCACCAAAGGTTGCAGTTGCTTCGACGCCGCCGCACCCCGTGATCTACTGAACGCCGCTCGTCGCTGTCCGTGGTCACTAGCGTTCTCTCTCTTCCTCTCTACCCGTTTCTCTTTACTAGTCTTCACCGCCACCGCTGCTTGACACCGTCTGTGGGTCGCGGGCTGCCGTTTAACTGTCAGAATCTTGGTTCTTGCATTTTTTTTTGGTGGCATTTACTGAACGAAGGACTGAAACAAACTAATGGCTGATGAAAACTTCATTTCTTCTCAAATCCTGCTGCTTGAAATATAGTACCCAACCTATTGTTGTACTTCTGCTCCTATTTTTGGCATTACGGTTGATTCTACAAGAGAGAGAGTCCATAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTTAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAATTGCTTACAGGAGACTTTTTCTTCTTCTCAACTTGAGAGTTCAAGCTTTGACTTTTTATCCTCTCTTTCCAAAGATTTGTTTCTTCATTTTTCACTATAACCTTTTGTAGCTTATATTTGTATTTTGTTTAATATATACAGTTAGAAAAGAGAATTGTTTTTGGAAATTGAGATGGGAAATCTTCAAACTTTTTGTTCAATAAGATTAGCCGTAGGCTCTGAGATTTGAAGTTTGTGACAGTCTTTTACAAGTAGAACGTCCGATCTCCATTCTCAAGGCTGTTTCATTCTCACAGAGTGTGTGtatatatatatatataaagttaatttttata

Coding sequence (CDS)

ATGAAAACTTCATTTCTTCTCAAATCCTGCTGCTTGAAATATAGTACCCAACCTATTGTTGTACTTCTGCTCCTATTTTTGGCATTACGGTTGATTCTACAAGAGAGAGAGTCCATAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTtAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAA

Protein sequence

MKTSFLLKSCCLKYSTQPIVVLLLLFLALRLILQERESIMAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSSAKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV*

Homology

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BLAST of Cucsa.322380 vs. Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 4.8e-12
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 69  KKCIPDSKI----VMGRANRGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYIL 128
           +K  PD K     +  ++N+G+Y G  ++FGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 129 DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTELG-LFWKSKIETL 174
           +R I +K+T   L+ I K GGID YL K    ++  ELG   WK +   L
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTKEKSARI-KELGPTGWKLRYRVL 159

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BLAST of Cucsa.322380 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-09
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 82  ANRGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 141
           A +    G+  + GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 142 KAGGIDEYLLK 153
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

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BLAST of Cucsa.322380 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.5e-09
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1


Query: 89  GRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 148
           G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++  GG+D 
Sbjct: 9   GKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVEHNGGLDA 68

Query: 149 YLLKTPYHKMDTE 162
           +LL TP  K+ TE
Sbjct: 69  FLLSTPNRKLPTE 80

[Close]

BLAST of Cucsa.322380 vs. Swiss-Prot
Match: RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 41/146 (28.08%), Postives = 68/146 (46.58%), Query Frame = 1


Query: 84  RGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKA 143
           + +Y G     GN      G+K+RR W PN   K L+S +L+    + VT+  LR IDK 
Sbjct: 29  QNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKE 88

Query: 144 GGIDEYLLKTPYHKMDTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKE---- 203
           GG+DEYL+K+   ++ + LGL        +  +LG    +      +   ++R+ E    
Sbjct: 89  GGLDEYLVKSTPSRLKS-LGLRGVELRALVLHKLGAKNPILEKLPSDSGAQKRYLEKVKD 148

Query: 204 --LKLSERAARREARRQMYGSSAKLN 224
             LKL+      +  + + G    +N
Sbjct: 149 VVLKLNRSKKLYQQIKSLVGKERSVN 173

[Close]

BLAST of Cucsa.322380 vs. Swiss-Prot
Match: RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmB PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-08
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 89  GRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 148
           G+ ++ GN VS    NKSRR W PN+QE  L S  L R +R++++T+ +R I+  GG+D 
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGLDA 68

Query: 149 YLLKTPYHKMDTE 162
            LL  P  +++ +
Sbjct: 69  ALLDIPDARLNQD 80

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BLAST of Cucsa.322380 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 6.1e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 99
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 100 EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 159
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 160 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 219
           TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 220 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 261
           AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 221

[Close]

BLAST of Cucsa.322380 vs. TrEMBL
Match: A0A059AZQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.1e-92
Identity = 169/215 (78.60%), Postives = 187/215 (86.98%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 99
           MAFRGKEMMKK+LK+VGENNLAPGVK++L+KCIP S+IVMGRA+RGI+AGRHIRFGN+VS
Sbjct: 1   MAFRGKEMMKKVLKRVGENNLAPGVKETLEKCIPKSQIVMGRAHRGIFAGRHIRFGNQVS 60

Query: 100 EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 159
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 160 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 219
           TE+GL+WKSKIE LYEELGKMEVVFFSPEDE KFEQ FK+LKL ERAARR+ RRQMYG+S
Sbjct: 121 TEMGLYWKSKIEKLYEELGKMEVVFFSPEDETKFEQGFKQLKLEERAARRDFRRQMYGTS 180

Query: 220 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQ 255
            K     EG      + EE+    +G  H DD  Q
Sbjct: 181 GKEKLAGEGQASDQATQEESPRIGDGHWHADDHDQ 215

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BLAST of Cucsa.322380 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 9.9e-89
Identity = 164/206 (79.61%), Postives = 182/206 (88.35%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 99
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSK+VM RA RG+YAGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 100 EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 159
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 160 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 219
           TE+GLFWK+KIE +YEELG+MEVVFFSPEDE KFEQ FKELKL+ERAARR+ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 220 AKLNQIKEGGEKGNGSSEEAAASSEG 246
            KL +I E     +G+      SS+G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

[Close]

BLAST of Cucsa.322380 vs. TrEMBL
Match: A0A068VCA3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00009057001 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 8.4e-88
Identity = 161/221 (72.85%), Postives = 189/221 (85.52%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRV 99
           M+FR +EM+K+I+KK+G E NLAPG+KD LKK +P+SK+VMGRA RG+YAGRHI+FGN+V
Sbjct: 1   MSFRSREMVKRIVKKIGGEKNLAPGLKDELKKSVPNSKVVMGRAQRGLYAGRHIQFGNQV 60

Query: 100 SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 159
           S DGGNKSRR+WKPNVQ+KRLFSYILDRHI+VKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SHDGGNKSRRSWKPNVQDKRLFSYILDRHIKVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 160 DTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGS 219
           DTE+GL+WK+KIE LYEELG+MEVVFFSPEDE KFE++F+ELKL +RAARREARR+MYG 
Sbjct: 121 DTEMGLYWKAKIEKLYEELGEMEVVFFSPEDEAKFEEQFRELKLEQRAARREARRKMYGW 180

Query: 220 SAKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 260
           S K   I EG     G+ +EAA   EG S   D H+  VAN
Sbjct: 181 SGKSEAIDEGRADAEGTHQEAARHGEGSSDA-DIHEPQVAN 220

[Close]

BLAST of Cucsa.322380 vs. TrEMBL
Match: E0CQ81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14510 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 8.4e-88
Identity = 166/220 (75.45%), Postives = 191/220 (86.82%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 99
           MAFR +EMMKKI+KK+G+N L    ++SLKK +PDSK+VMGRA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRSREMMKKIVKKMGDNKL----EESLKKYVPDSKVVMGRAKRGIYAGRHIQFGNRVS 60

Query: 100 EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 159
           EDGGNK+RR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 160 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 219
           TE+GLFWK+KIE +YEELG+M+VVFFSPEDEVKFEQ FKELKL+ERAARREARR +YG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGEMDVVFFSPEDEVKFEQGFKELKLAERAARREARRHIYGGS 180

Query: 220 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 260
            K  Q++EGG     ++E AA   EG SH  D+ ++ VAN
Sbjct: 181 GKQVQLEEGGADIQETNEVAARVLEGSSH-VDAPERLVAN 215

[Close]

BLAST of Cucsa.322380 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family)

HSP 1 Score: 296.2 bits (757), Expect = 2.0e-80
Identity = 143/216 (66.20%), Postives = 171/216 (79.17%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 99
           MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+K+VMGRA RG+YAGRHI++GNRVS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 100 EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 159
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 160 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 219
           TE+GL+WK+K+E  Y ELG+MEV FF+PEDE K EQ FK+L ++++ ARREARR      
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTF---- 180

Query: 220 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQ 256
                     +KG G+  +  AS EGG  G +SHQ+
Sbjct: 181 ---------RKKGGGNKGDEEASIEGGG-GSESHQE 202

[Close]

BLAST of Cucsa.322380 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 8.8e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 99
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 100 EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 159
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 160 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 219
           TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 220 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 261
           AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 221

[Close]

BLAST of Cucsa.322380 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo])

HSP 1 Score: 402.9 bits (1034), Expect = 4.3e-109
Identity = 205/223 (91.93%), Postives = 212/223 (95.07%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 99
           MAFRGKEMMKKILKKVGENNLAPGVK+SLKK +PDSKIVMGRANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 100 EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 159
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 160 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 219
           TELGLFWK+KIETLYEELGKMEVVFFSPEDE KFEQRFK+LKLSERAAR+EARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 220 A-KLNQIKEGGEKGNGSSEEAAASSEGGSHG-DDSHQQWVANV 261
             KLNQIKEGGE  N SSEE AASSEGGSHG DDSHQQWVANV
Sbjct: 181 TNKLNQIKEGGEDTNVSSEE-AASSEGGSHGDDDSHQQWVANV 222

[Close]

BLAST of Cucsa.322380 vs. NCBI nr
Match: gi|702438258|ref|XP_010070462.1| (PREDICTED: uncharacterized protein LOC104457224 [Eucalyptus grandis])

HSP 1 Score: 347.8 bits (891), Expect = 1.6e-92
Identity = 169/215 (78.60%), Postives = 187/215 (86.98%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 99
           MAFRGKEMMKK+LK+VGENNLAPGVK++L+KCIP S+IVMGRA+RGI+AGRHIRFGN+VS
Sbjct: 1   MAFRGKEMMKKVLKRVGENNLAPGVKETLEKCIPKSQIVMGRAHRGIFAGRHIRFGNQVS 60

Query: 100 EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 159
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 160 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 219
           TE+GL+WKSKIE LYEELGKMEVVFFSPEDE KFEQ FK+LKL ERAARR+ RRQMYG+S
Sbjct: 121 TEMGLYWKSKIEKLYEELGKMEVVFFSPEDETKFEQGFKQLKLEERAARRDFRRQMYGTS 180

Query: 220 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQ 255
            K     EG      + EE+    +G  H DD  Q
Sbjct: 181 GKEKLAGEGQASDQATQEESPRIGDGHWHADDHDQ 215

[Close]

BLAST of Cucsa.322380 vs. NCBI nr
Match: gi|747070067|ref|XP_011081840.1| (PREDICTED: uncharacterized protein LOC105164778 [Sesamum indicum])

HSP 1 Score: 339.0 bits (868), Expect = 7.5e-90
Identity = 167/221 (75.57%), Postives = 191/221 (86.43%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRV 99
           MAFR +EMMKKILKKVG E NLAPGVK+ LKK +PDSK+VMGRA+RG+YAGRHI+FGNRV
Sbjct: 1   MAFRSREMMKKILKKVGGEQNLAPGVKEQLKKSVPDSKVVMGRAHRGLYAGRHIQFGNRV 60

Query: 100 SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 159
           SEDGGNK+RR WKPNVQEKRLFSYILDRHIRVKV+THALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRTWKPNVQEKRLFSYILDRHIRVKVSTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 160 DTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGS 219
           DTE+GLFWK+KIE +Y++LG+MEVVFFSPEDE  FE++FKELKL  +AARREARR+MYGS
Sbjct: 121 DTEMGLFWKTKIEKMYQDLGEMEVVFFSPEDEANFEEQFKELKLEMKAARREARRKMYGS 180

Query: 220 SAKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 260
           +A    IK+G + G  S  E A+ SE GS   D H+  VAN
Sbjct: 181 TATQESIKDGEDVGEAS--EGASRSEDGSSHADLHEPMVAN 219

[Close]

BLAST of Cucsa.322380 vs. NCBI nr
Match: gi|1009136027|ref|XP_015885311.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 339.0 bits (868), Expect = 7.5e-90
Identity = 163/200 (81.50%), Postives = 182/200 (91.00%), Query Frame = 1


Query: 40  MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 99
           MAFRGKEMMK I+KKVGE N+APGVK+SLKKCIPDSKIVM RA RGI+AGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKNIMKKVGEKNMAPGVKESLKKCIPDSKIVMNRAKRGIFAGRHIRFGNRVS 60

Query: 100 EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 159
           EDGGNK+RR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYSKMD 120

Query: 160 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 219
           TE+GLFWK+KIE LYEELG+ EVVFFSPEDE KFEQ FKEL+L+E+AA++EAR+QM+G S
Sbjct: 121 TEMGLFWKAKIEKLYEELGQKEVVFFSPEDETKFEQEFKELRLNEKAAQKEARKQMFGWS 180

Query: 220 AKLNQIKEGGEKGNGSSEEA 240
            KL Q++EG  K   + EEA
Sbjct: 181 GKLKQMEEGEAKNEETKEEA 200

The following BLAST results are available for this feature:

BLAST of Cucsa.322380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM24_YEAST	4.8e-12	39.09	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
RL28_MAGMM	3.8e-09	43.66	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
RL28_GLUDA	6.5e-09	42.47	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
RM24_SCHPO	1.5e-08	28.08	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
RL28_RHOCS	7.2e-08	39.73	50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]

BLAST of Cucsa.322380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1P8_CUCSA	6.1e-123	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1	[more]
A0A059AZQ3_EUCGR	1.1e-92	78.60	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1	[more]
A0A0D2PMQ4_GOSRA	9.9e-89	79.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1	[more]
A0A068VCA3_COFCA	8.4e-88	72.85	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00009057001 PE=3 SV=1	[more]
E0CQ81_VITVI	8.4e-88	75.45	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14510 PE=3 SV=...	[more]

BLAST of Cucsa.322380 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31460.1	2.0e-80	66.20	Ribosomal L28 family	[more]

BLAST of Cucsa.322380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456779\|ref\|XP_004146126.1\|	8.8e-123	100.00	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus]	[more]
gi\|659095444\|ref\|XP_008448584.1\|	4.3e-109	91.93	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo]	[more]
gi\|702438258\|ref\|XP_010070462.1\|	1.6e-92	78.60	PREDICTED: uncharacterized protein LOC104457224 [Eucalyptus grandis]	[more]
gi\|747070067\|ref\|XP_011081840.1\|	7.5e-90	75.57	PREDICTED: uncharacterized protein LOC105164778 [Sesamum indicum]	[more]
gi\|1009136027\|ref\|XP_015885311.1\|	7.5e-90	81.50	PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001383	Ribosomal_L28
IPR026569	Ribo_L28/L24
IPR001383	Ribosomal_L28
IPR026569	Ribo_L28/L24

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.322380.1	Cucsa.322380.1	mRNA
Cucsa.322380.2	Cucsa.322380.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 40..110 score: 14
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 23..177 score: 1.9
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 48..103 score: 1.8
None	No IPR available	GENE3D	G3DSA:2.30.170.40		coord: 44..118 score: 2.1
None	No IPR available	unknown	SSF143800	L28p-like	coord: 43..119 score: 2.55

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.322380	Cla008867	Watermelon (97103) v1	cgywmB583
Cucsa.322380	Csa3G005030	Cucumber (Chinese Long) v2	cgycuB458
Cucsa.322380	MELO3C013792	Melon (DHL92) v3.5.1	cgymeB532
Cucsa.322380	ClCG10G000990	Watermelon (Charleston Gray)	cgywcgB556
Cucsa.322380	CSPI03G00990	Wild cucumber (PI 183967)	cgycpiB484
Cucsa.322380	CmaCh16G012200	Cucurbita maxima (Rimu)	cgycmaB0887
Cucsa.322380	CmoCh16G012630	Cucurbita moschata (Rifu)	cgycmoB0885
Cucsa.322380	Lsi07G011290	Bottle gourd (USVL1VR-Ls)	cgylsiB530
Cucsa.322380	Cp4.1LG14g10040	Cucurbita pepo (Zucchini)	cgycpeB0845
Cucsa.322380	MELO3C013792.2	Melon (DHL92) v3.6.1	cgymedB533
Cucsa.322380	CsaV3_3G001030	Cucumber (Chinese Long) v3	cgycucB499
Cucsa.322380	Cla97C10G185610	Watermelon (97103) v2	cgywmbB562
Cucsa.322380	BhiUN179G4	Wax gourd	cgywgoB655
Cucsa.322380	Carg19495	Silver-seed gourd	carcgyB0496
Cucsa.322380	Carg23563	Silver-seed gourd	carcgyB1164

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.322380	Cucurbita maxima (Rimu)	cgycmaB0899
Cucsa.322380	Cucurbita moschata (Rifu)	cgycmoB0896
Cucsa.322380	Cucurbita pepo (Zucchini)	cgycpeB0854
Cucsa.322380	Silver-seed gourd	carcgyB0759