ClCG10G000990 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G000990
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	50S ribosomal protein L28
Location	CG_Chr10 : 1019712 .. 1022828 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGCCTGTTGGCAGTAATTCAAGTTCTTTTCGCAGAACGTTCTATTTCTGTTCTTATTTTTAGGAGTATATTTGGATCACGGCTGATTGTACGAGAGAGAGTCAATATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAGTATGAACCTCTTCTTTTCCTTTATGTTTCTTAAAATCTTTGGTCGAGATTTTCTCTGAATATGAATGTATTTTACTGATTTGCTGAATTCTATGGTGTTAGACCATTAGTCTCTTTGCCAGCATGAGTTAAGGCATCTCCATCTACTCCTTTCTCTGGGGTGTTGCATATTCAAATTTCCACATCCTCATTATACCGAAAAAAAAAGAGATAGCTCATTTTTCTTTTTGGAAAAGAAACAATTCCATTGATAGTATGGAAGTATAAATAGGGGAGACCTCATTAGATGGATTACAATAGACCACTACAAATTGGAGAGGGGAGCGGAATAGCCAGGGAGATGGAAGAGGGGAAACATTTACATTAAAAAACTACTAAGGGAGCGTTTGGAATGCAGTTTCAAGTGTTTAATTTAAAAGATAAGTCATTTTGAAAAAATTTGGAGTGTTTAGCAACCACTCAAAATAGATTTTGAAGTGTATTTTAAACAATTTTTATCAAAAGAGTTTAAATAAAAATGAGTTTTTTGAAAAATATTTTTTTCTCAAGTCAATCCAAATGGGCCCTAAGTTAACTACATCTTCAAAAACTCTGTGATAGGGTAGTTCTTCTATCATGGAAGATCTGTTCGTTTCTTTCTTGTCATGTGATCTAGCAGAAGGCTTTAATGAAATCTCTTTGTTAGTCCGTTTGAGATCTATTATTTTTCTTTTAGTCCCTTTTAATTGGAGAAGTCCTTTGCCCCTTCTGGAGGCCTTCTTTGTAATTTCATACCATCAATGAAATTGCTTCTTATGCAAGAAAAAACAGTTAGAAGTGAAGGTGTCATAAATGAATTTAGTGCACTCTAAACTGATAGCATCAGAGACATTTGGCAGAGGCTTCTTGCTGTTACTATTTCACAACTTATATCTTTTCAATTCATGCTTCTAATTTTTCTTTTTGAGTAACAGATGATTGTTACTCATAAGTTTCGTTGGAGGAGTTATTGAATTTTTCGGTTTTCTGCTCTCATTCACTTTGTGATAGCCATGTATGCCGATGAAAAACCGATGTTCATAGATTACTGGATCACTTATCATACTGGAACTGTGTATTCATTCATGTAAGTTTAGAAATATTGGATTTTCAACCTCAGCAGTCTGAGGTGAATTTTATCTGTTTTTTGGTGCCTTGTTTTGATGATTGTCTGGATTTGGATCTGGGGTTAGCATATGAGTCCATCGTGCTGCTACAACTCTTAACCACACTGTTGATTAGGAATTTGTAGATCTAGAGTCAAGTGGAGGTTTTATTTTGATCATGTAATTTGTTTGCTGTGAGGTTTCTATGCCCCACTCCTATGTCAAATTTATATATATGTGGAAGAACCCTTAGGGTGGGGAGACTGGGACATGAGTCGGGGTTCAGCATGGGTTTGGCTTTCTAAGCTCAATGGTCTAAACTTCTTTTTTTGATATCCGTGAGTGTCCGGGCCAGTTTACACGCACTTCGACTAATCTCACGGGAAATTAATTCCTAGGTAGGTGGCCACCATGGATTGAATCCTTGATCTCTTAGTCATTTATTGAGACTATGTCTCCTTTTTACCACTAGGCTAATCCATGATGGTTAGTCTCAACCTATTGTTTGACAACCCGAGTTCAATTAAAGAAACCAACCAGCTTGAACAACAGCCTACTATTCCCCCTCCACCCTACAATTTTCAACTCAAGCTTCCTAGATTTGCACTCCAAACACAGAAGAACCTATGACCCAAATGACCCATTAGATCGTTAAAGAAGAGAAAATGAACTTAAAGCAGTGTTTCCTTCTGCGAGCAAATTTTATTGGTTTTGCTGTATATTTGGCCGTTTATTTACTTCTCTACGGCATGGCTCTCTTTCTCTTGTATTCAGAAATTTGAGGCACAATATAATAGTTTTGTTTGGTCAACTTGGAGTGTAATTCTCGATCTTCATAGACAAGTAACAGGATTCTCAATCTTTTCTTATATTCACCATCTATCTAGCACTTAACTGGTGTAAATTGAGTCATCTCTTTTGTACTTTTAGCTTACGTAATCTTTTGTCCAACTGAAAATCTTTTTTTAATCCATTGGAATGACCTCATCATTTTGTAAATGGTTCGTTTTCCTACAAAAGAGAAAAAAAAAGGAAAGAGAAAAAAAAAAAAAAGCCGTTTTCTTCCATCGTATTGGCTCTATGTCTATATAAGGGTTCGGTGCCTTTTTCAATTCTTTAGCTCACAAACCTTCTTATTGGCATGATCTTATACTGTTTCATTTTGTCATGCGATCATTTTATCAATATTGGAGTATTTAACCTTTATGTGCTGGTGCTTATAGATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

mRNA sequence

GAAGCCTGTTGGCAGTAATTCAAGTTCTTTTCGCAGAACGTTCTATTTCTGTTCTTATTTTTAGGAGTATATTTGGATCACGGCTGATTGTACGAGAGAGAGTCAATATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

Coding sequence (CDS)

ATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

Protein sequence

MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSSTKHDQIEESQENHHGSSEEAASSEGGSHGDDGPQQRVANF

Homology

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BLAST of ClCG10G000990 vs. Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 6.9e-12
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 1


Query: 30  KKCIPDSKV----VMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G+Y G  +QFGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLK 114
           +R I +K+T   L+ I K GGID YL K
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTK 138

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BLAST of ClCG10G000990 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.5e-10
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A++    G+  Q GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

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BLAST of ClCG10G000990 vs. Swiss-Prot
Match: RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-09
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1


Query: 8   MMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVSEDGGNKS 67
           M  K+L+K+    L   VK  +    P SK   N     +Y G   + GN      G+K+
Sbjct: 1   MASKLLRKLAYPTLP--VKGKIYD--PFSKFQQN-----LYGGSKTEAGNNKIPKFGHKT 60

Query: 68  RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKT 115
           RR W PN   K L+S +L+    + VT+  LR IDK GG+DEYL+K+
Sbjct: 61  RRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKEGGLDEYLVKS 98

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BLAST of ClCG10G000990 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-09
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDAFLLSTPNRKLPTE 80

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BLAST of ClCG10G000990 vs. Swiss-Prot
Match: RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 50  GRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +Q GN VS    NKSRR W PN+QE  L S  L R +R++++T+ +R I+  GG+D 
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGLDA 68

Query: 110 YLLKTPYHKMDTEIGLFWKAKIEKMYE 137
            LL  P  +++ +     K +I+K  E
Sbjct: 69  ALLDIPDARLNQDARRV-KKQIQKAIE 93

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BLAST of ClCG10G000990 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.6e-103
Identity = 191/220 (86.82%), Postives = 203/220 (92.27%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEE-AASSEGGSHGDDGPQQRVAN 220
            K +QI+E  E  +GSSEE AASSEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

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BLAST of ClCG10G000990 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.9e-93
Identity = 172/206 (83.50%), Postives = 188/206 (91.26%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF+ELKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGG 207
            K ++I E++ +H G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

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BLAST of ClCG10G000990 vs. TrEMBL
Match: A0A0B0N4M4_GOSAR (54S ribosomal L24, mitochondrial OS=Gossypium arboreum GN=F383_01611 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.4e-91
Identity = 169/206 (82.04%), Postives = 186/206 (90.29%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILD  IRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDHQIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLAERAARRDARRQMYGWS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGG 207
            K ++I E++ +H G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

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BLAST of ClCG10G000990 vs. TrEMBL
Match: A0A067FV36_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.6e-90
Identity = 163/221 (73.76%), Postives = 194/221 (87.78%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-EKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRV 60
           MAFRGKEMMKK+++KVG EKNLAPGVK+SLKKC+PDS++VMNRAKRG++AG+HIQFGNRV
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR+WKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           DTE+GL+WK KIEK+YEELGQTEV FF+PE+EAK EQ F+++KL++RAAR+E RRQMYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STKHDQIEESQENHHGSSEEAAS-SEGGSHGDDGPQQRVAN 220
           S+K  QIE+   +   ++EEAA     G   +  P+  VAN
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVAN 221

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BLAST of ClCG10G000990 vs. TrEMBL
Match: V4UM17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.6e-90
Identity = 163/221 (73.76%), Postives = 194/221 (87.78%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-EKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRV 60
           MAFRGKEMMKK+++KVG EKNLAPGVK+SLKKC+PDS++VMNRAKRG++AG+HIQFGNRV
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR+WKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           DTE+GL+WK KIEK+YEELGQTEV FF+PE+EAK EQ F+++KL++RAAR+E RRQMYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STKHDQIEESQENHHGSSEEAAS-SEGGSHGDDGPQQRVAN 220
           S+K  QIE+   +   ++EEAA     G   +  P+  VAN
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVAN 221

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BLAST of ClCG10G000990 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family)

HSP 1 Score: 293.1 bits (749), Expect = 1.4e-79
Identity = 142/208 (68.27%), Postives = 165/208 (79.33%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK++KKVG +N+ P +K+ LK C+PD+KVVM RAKRG+YAGRHIQ+GNRVS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARR--QMYG 180
           TE+GL+WK K+E  Y ELGQ EV FF+PEDEAK EQGF++L ++++ AR+EARR  +  G
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTFRKKG 180

Query: 181 SSTKHDQIEESQENHHGSSEEAASSEGG 207
              K D  EE+     G SE     + G
Sbjct: 181 GGNKGD--EEASIEGGGGSESHQEDDNG 206

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BLAST of ClCG10G000990 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 2.2e-103
Identity = 191/220 (86.82%), Postives = 203/220 (92.27%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEE-AASSEGGSHGDDGPQQRVAN 220
            K +QI+E  E  +GSSEE AASSEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

[Close]

BLAST of ClCG10G000990 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo])

HSP 1 Score: 367.9 bits (943), Expect = 1.3e-98
Identity = 187/221 (84.62%), Postives = 202/221 (91.40%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVK+SLKK +PDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIE +YEELG+ EVVFFSPEDEAKFEQ F++LKLSERAARKEARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 T-KHDQIEESQENHHGSSEEAASSEGGSHG-DDGPQQRVAN 220
           T K +QI+E  E+ + SSEEAASSEGGSHG DD  QQ VAN
Sbjct: 181 TNKLNQIKEGGEDTNVSSEEAASSEGGSHGDDDSHQQWVAN 221

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BLAST of ClCG10G000990 vs. NCBI nr
Match: gi|823122027|ref|XP_012469124.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii])

HSP 1 Score: 350.1 bits (897), Expect = 2.8e-93
Identity = 172/206 (83.50%), Postives = 188/206 (91.26%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF+ELKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGG 207
            K ++I E++ +H G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

[Close]

BLAST of ClCG10G000990 vs. NCBI nr
Match: gi|728825208|gb|KHG06146.1| (54S ribosomal L24, mitochondrial [Gossypium arboreum])

HSP 1 Score: 344.0 bits (881), Expect = 2.0e-91
Identity = 169/206 (82.04%), Postives = 186/206 (90.29%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILD  IRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDHQIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLAERAARRDARRQMYGWS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGG 207
            K ++I E++ +H G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

[Close]

BLAST of ClCG10G000990 vs. NCBI nr
Match: gi|1009136027|ref|XP_015885311.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 342.8 bits (878), Expect = 4.4e-91
Identity = 165/200 (82.50%), Postives = 185/200 (92.50%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMK I+KKVGEKN+APGVK+SLKKCIPDSK+VMNRAKRGI+AGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKNIMKKVGEKNMAPGVKESLKKCIPDSKIVMNRAKRGIFAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYSKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEK+YEELGQ EVVFFSPEDE KFEQ F+EL+L+E+AA+KEAR+QM+G S
Sbjct: 121 TEMGLFWKAKIEKLYEELGQKEVVFFSPEDETKFEQEFKELRLNEKAAQKEARKQMFGWS 180

Query: 181 TKHDQIEESQENHHGSSEEA 201
            K  Q+EE +  +  + EEA
Sbjct: 181 GKLKQMEEGEAKNEETKEEA 200

The following BLAST results are available for this feature:

BLAST of ClCG10G000990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM24_YEAST	6.9e-12	42.05	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
RL28_MAGMM	6.5e-10	45.07	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
RM24_SCHPO	5.5e-09	37.38	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
RL28_GLUDA	5.5e-09	40.00	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
RL28_RHOCS	2.1e-08	39.08	50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]

BLAST of ClCG10G000990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1P8_CUCSA	1.6e-103	86.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1	[more]
A0A0D2PMQ4_GOSRA	1.9e-93	83.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1	[more]
A0A0B0N4M4_GOSAR	1.4e-91	82.04	54S ribosomal L24, mitochondrial OS=Gossypium arboreum GN=F383_01611 PE=3 SV=1	[more]
A0A067FV36_CITSI	2.6e-90	73.76	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1	[more]
V4UM17_9ROSI	2.6e-90	73.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1	[more]

BLAST of ClCG10G000990 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31460.1	1.4e-79	68.27	Ribosomal L28 family	[more]

BLAST of ClCG10G000990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456779\|ref\|XP_004146126.1\|	2.2e-103	86.82	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus]	[more]
gi\|659095444\|ref\|XP_008448584.1\|	1.3e-98	84.62	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo]	[more]
gi\|823122027\|ref\|XP_012469124.1\|	2.8e-93	83.50	PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii]	[more]
gi\|728825208\|gb\|KHG06146.1\|	2.0e-91	82.04	54S ribosomal L24, mitochondrial [Gossypium arboreum]	[more]
gi\|1009136027\|ref\|XP_015885311.1\|	4.4e-91	82.50	PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001383	Ribosomal_L28
IPR026569	Ribo_L28/L24

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006457	protein folding
biological_process	GO:0006950	response to stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G000990.1	ClCG10G000990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 42..110 score: 14
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 23..177 score: 1.1
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 46..103 score: 3.9
None	No IPR available	GENE3D	G3DSA:2.30.170.40		coord: 43..118 score: 6.6
None	No IPR available	unknown	SSF143800	L28p-like	coord: 43..119 score: 8.83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G000990	Csa3G005030	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G000990	MELO3C013792	Melon (DHL92) v3.5.1	mewcgB415
ClCG10G000990	Cla008867	Watermelon (97103) v1	wcgwmB056
ClCG10G000990	Cla97C10G185610	Watermelon (97103) v2	wcgwmbB038
ClCG10G000990	BhiUN179G4	Wax gourd	wcgwgoB131
ClCG10G000990	CSPI03G00990	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G000990	Cucsa.322380	Cucumber (Gy14) v1	cgywcgB556
ClCG10G000990	CmaCh16G012200	Cucurbita maxima (Rimu)	cmawcgB284
ClCG10G000990	CmoCh16G012630	Cucurbita moschata (Rifu)	cmowcgB276
ClCG10G000990	Lsi07G011290	Bottle gourd (USVL1VR-Ls)	lsiwcgB389
ClCG10G000990	Cp4.1LG14g10040	Cucurbita pepo (Zucchini)	cpewcgB193
ClCG10G000990	CsGy3G000940	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G000990	MELO3C013792.2	Melon (DHL92) v3.6.1	medwcgB401
ClCG10G000990	Carg23563	Silver-seed gourd	carwcgB1021
ClCG10G000990	Carg19495	Silver-seed gourd	carwcgB0421
ClCG10G000990	CsaV3_3G001030	Cucumber (Chinese Long) v3	cucwcgB194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G000990	Silver-seed gourd	carwcgB0655
ClCG10G000990	Cucurbita maxima (Rimu)	cmawcgB721
ClCG10G000990	Cucurbita moschata (Rifu)	cmowcgB724
ClCG10G000990	Cucurbita pepo (Zucchini)	cpewcgB772