Cla97C10G185610 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G185610
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Ribosomal protein L28
Location	Cla97Chr10 : 947525 .. 950583 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAGTATGAACCTCTTCTTTTCCTTTATGTTTCTTAAAATCTTTGGTCGAGATTTTCTCTGAATATGAATGTATTTTACTGATTTGCTGAATTCTATGGTGTTAGACCATTAGTCTCTTTGCCAGCATGAGTTAAGGCATCTCCATCTACTCCTTTCTCTGGGGTGTTGCATATTCAAATTTCCACATCCTCATTATACCGAAAAAAAAGAGATAGCTCATTTTTCTTTTTGGAAAAGAAACAATTCCATTGATAGTATGGAAGTATAAATAGGGGAGACCTCATTAGATGGATTACAATAGACCACTACAAATTGGAGAGGGGAGCGGAATAGCCAGGGAGATGGAAGAGGGGAAACATTTACATTAAAAAACTACTAAGGGAGCGTTTGGAATGCAGTTTCAAGTGTTTAATTTAAAAGATAAGTCATTTTGAAAAAATTTGGAGTGTTTAGCAACCACTCAAAATAGATTTTGAAGTGTATTTTAAACAATTTTTATCAAAAGAGTTTAAATAAAAATGAGTTTTTTGAAAAATATTTTTTTCTCAAGTTAATCCAAATGGGCCCTAAGTTAACTACATCTTCAAAAACTCTGTGATAGGGTAGTTCTTCTATCATGGAAGATCTGTTCGTTTCTTTCTTGTCATGTGATCTAGCAGAAGGCTTTAATGAAATCTCTTTGTTAGTCCGTTTGAGATCTATTATTTTTCTTTTAGTCCCTTTTAATTGGAGAAGTCCTTTGCCCCTTCTGGAGGCCTTCTTTGTAATTTCATACCATCAATGAAATTGCTTCTTATGCAAGAAAAAACAGTTAGAAGTGAAGGTGTCATAAATGAATTTAGTGCACTCTAAACTGATAGCATCAGAGACATTTGGCAGAGGCTTCTTGCTGTTACTATTTCACAACTTATATCTTTTCAATTCATGCTTCTAATTTTTCTTTTTGAGTAACAGATGATTGTTACTCATAAGTTTCGTTGGAGGAGTTATTGAATTTTTCGGTTTTCTGCTCTCATTCACTTTGTGAATAGCCATGTATGCCGATGAAAAACCGATGTTCATAGATTACTGGATCACTTATCATACTGGAACTGTGTATTCATTCATGTAAGTTTAGAAATATTGGATTTTCAACCTCAGCAGTCTGAGGTGAATTTTATCTGTTTTTTGGTGCCTTGTTTTGATGATTGTCTGGATTTGGATCTGGGGTTAGCATATGAGTCCATCGTGCTGCTACAACTCTTAACCACACTGTTGATTAGGAATTTGTAGATCTAGAGTCAAGTGGAGGTTTTATTTTGATCATGTAATTTGTTTGCTGTGAGGTTTCTATGCCCCACTCCTATGTCAAATTTATATATATGTGGAAGAACCCTTAGGGTGGGGAGACTGGGACATGAGTTGGGGTTCAGCATGGGTTTGGCTTTCTAAGCTCAATGGTCTAAACTTCTTTTTTTGATATCCGTGAGTGTCCGGGCCAGTTTACACGCACTTCGACTAATCTCACGGGACAACCCGCCTGACCCTACAATATTTGGGTGTCAAAGAAACTCATAGGAAATTAATTCCTAGGTAGGTGGCCACCATGGATTGAATCCTTGATCTCTTAGTCATTTATTGAGACTATGTCTCCTTTTTACCACTAGGCTAATCCATGATGGTTAGTCTCAACCTATTGTTTGACAACCCGAGTTCAATTAAAGAAACCAACCAGCTTGAACAACAGCCTACTATTCCCCCTCCACCCTACAATTTTCAACTCAAGCTTCCTAGATTTGCACTCCAAACACAGAAGAACCTATGACCCAAATGACCCATTAGATCGTTAAAGAAGAGAAAATGAACTTAAAGCGGTGTTTCCTTCTGCGAGCAAATTTTATTGGTTTTGCTGTATATTTGGCCGTTTATTTACTTCTCTACGGCATGGCTCTCTTTCTCTTGTATTCAGAAATTTGAGGCACAATATAATAGTTTTGTTTGGTCAACTTGGAGTGTAATTCTCGATCTTCATAGACAAGTAACAGGATTCTCAATCTTTTCTTATATTCACCATCTATCTAGCACTTAACTGGTGTAAATTGAGTCATCTCTTTTGTACTTTTAGCTTACGTAATCTTTTGTCCAACTGAAAATCTTTTTTTAATCCATTGGAATGACCTCATCATTTTGTAAATGGTTCGTTTTCCTACAAAAGAGAAAAAAAAAGGAAAGAGAAAAAAAAAAAAAAAGCCGTTTTCTTCCATCGTATTGGCTCTATGTCTATATAAGGGTTCGGTGCCTTTTTCAATTCTTTAGCTCACAAACCTTCTTATTGGCATGATCTTATACTGTTTCATTTTGTCATGCGATCATTTTATCAATATTGGAGTATTTAACCTTTATGTGCTGGTGCTTATAGATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

mRNA sequence

ATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

Coding sequence (CDS)

ATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

Protein sequence

MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSSTKHDQIEESQENHHGSSEEAASSEGGSHGDDGPQQRVANF

Homology

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BLAST of Cla97C10G185610 vs. NCBI nr
Match: XP_022965371.1 (uncharacterized protein LOC111465250 [Cucurbita maxima])

HSP 1 Score: 347.8 bits (891), Expect = 2.7e-92
Identity = 172/179 (96.09%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSKVVMNRAKRGI+AGRHIQFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           TEIGLFWKAKIEK+YEELGQ EVVFFSPEDEAKFEQGFR+LKLSERAARKE RR+MYGS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGS 179

[Close]

BLAST of Cla97C10G185610 vs. NCBI nr
Match: XP_022923524.1 (uncharacterized protein LOC111431195 [Cucurbita moschata])

HSP 1 Score: 347.4 bits (890), Expect = 3.5e-92
Identity = 170/179 (94.97%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VMNRAKRGI+AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           TEIGLFWKAKIEK+YEELGQ EVVFFSPEDEAKFEQGFR+LKLSERAARKEARR+MYGS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGS 179

[Close]

BLAST of Cla97C10G185610 vs. NCBI nr
Match: XP_023553194.1 (uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.7 bits (883), Expect = 2.3e-91
Identity = 169/179 (94.41%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VMNRAKRGI+AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQ KRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQGKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           TEIGLFWKAKIEK+YEELGQ EVVFFSPEDEAKFEQGFR+LKLSERAARKEARR+MYGS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGS 179

[Close]

BLAST of Cla97C10G185610 vs. NCBI nr
Match: XP_022145425.1 (uncharacterized protein LOC111014872 [Momordica charantia])

HSP 1 Score: 340.5 bits (872), Expect = 4.2e-90
Identity = 168/179 (93.85%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLAPGVK+SLKKCIPDSKVVMNRAKRGI+AGRHIQFGNRVS
Sbjct: 1   MAFRGKEMMKKVLKKVGEINLAPGVKESLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           TEIGLFWKAKI K+YEELGQ EVVFFSPEDEAKFEQGFRELKL+ERAARKEARRQ YGS
Sbjct: 121 TEIGLFWKAKITKLYEELGQMEVVFFSPEDEAKFEQGFRELKLAERAARKEARRQTYGS 179

[Close]

BLAST of Cla97C10G185610 vs. NCBI nr
Match: XP_017983786.1 (PREDICTED: uncharacterized protein LOC18587627 [Theobroma cacao])

HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88
Identity = 162/178 (91.01%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK++KKVGE NLAPGVK+ LKKCIPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLVKKVGENNLAPGVKEQLKKCIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQ+KRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRSWKPNVQDKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYG 179
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+ERAAR++ARRQMYG
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLAERAARRDARRQMYG 178

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BLAST of Cla97C10G185610 vs. TrEMBL
Match: tr|A0A0D2PMQ4|A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 9.0e-89
Identity = 164/178 (92.13%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYG 179
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF+ELKL+ERAAR++ARRQMYG
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYG 178

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BLAST of Cla97C10G185610 vs. TrEMBL
Match: tr|A0A0A0L1P8|A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 3.4e-88
Identity = 163/179 (91.06%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           TE+GLFWK+KIE +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EARRQMYGS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGS 179

[Close]

BLAST of Cla97C10G185610 vs. TrEMBL
Match: tr|A0A1U8LI83|A0A1U8LI83_GOSHI (uncharacterized protein LOC107926724 OS=Gossypium hirsutum OX=3635 GN=LOC107926724 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.7e-87
Identity = 162/178 (91.01%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDR IRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRQIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYG 179
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+ERAAR++ARRQMYG
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLAERAARRDARRQMYG 178

[Close]

BLAST of Cla97C10G185610 vs. TrEMBL
Match: tr|A0A2P5RA57|A0A2P5RA57_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19372 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.7e-87
Identity = 162/178 (91.01%), Postives = 172/178 (96.63%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRIWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYG 179
           TE+GLFWKAKIEKMYEELGQ  VVFFSPEDEAKFEQGF+ELKL+ERAAR++ARRQMYG
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMRVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYG 178

[Close]

BLAST of Cla97C10G185610 vs. TrEMBL
Match: tr|A0A2P5XU43|A0A2P5XU43_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13777 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.7e-87
Identity = 162/178 (91.01%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDR IRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRQIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYG 179
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+ERAAR++ARRQMYG
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLAERAARRDARRQMYG 178

[Close]

BLAST of Cla97C10G185610 vs. Swiss-Prot
Match: sp|P36525|RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 30  KKCIPDSKV----VMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G+Y G  +QFGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLK 114
           +R I +K+T   L+ I K GGID YL K
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTK 138

[Close]

BLAST of Cla97C10G185610 vs. Swiss-Prot
Match: sp|A0L5U1|RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rpmB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-10
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A++    G+  Q GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSH-SQRKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

[Close]

BLAST of Cla97C10G185610 vs. Swiss-Prot
Match: sp|A9HS05|RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) OX=272568 GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDAFLLSTPNRKLPTE 80

[Close]

BLAST of Cla97C10G185610 vs. Swiss-Prot
Match: sp|Q5FUP5|RL28_GLUOX (50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rpmB PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T  +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETTLISDILGASVRMRLSTDGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQT 142
             GG+D +LL TP  K+ TE  +  +  +     +  QT
Sbjct: 62  HNGGLDSFLLGTPNRKLPTEAQVIKRRILRVQERKAAQT 99

[Close]

BLAST of Cla97C10G185610 vs. Swiss-Prot
Match: sp|O60091|RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.5e-09
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 8   MMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVSEDGGNKS 67
           M  K+L+K+    L   VK  +    P SK   N     +Y G   + GN      G+K+
Sbjct: 1   MASKLLRKLAYPTLP--VKGKIYD--PFSKFQQN-----LYGGSKTEAGNNKIPKFGHKT 60

Query: 68  RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKT 115
           RR W PN   K L+S +L+    + VT+  LR IDK GG+DEYL+K+
Sbjct: 61  RRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKEGGLDEYLVKS 98

[Close]

BLAST of Cla97C10G185610 vs. TAIR10
Match: AT4G31460.1 (Ribosomal L28 family)

HSP 1 Score: 276.9 bits (707), Expect = 1.0e-74
Identity = 129/169 (76.33%), Postives = 150/169 (88.76%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK++KKVG +N+ P +K+ LK C+PD+KVVM RAKRG+YAGRHIQ+GNRVS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAAR 170
           TE+GL+WK K+E  Y ELGQ EV FF+PEDEAK EQGF++L ++++ AR
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDAR 169

The following BLAST results are available for this feature:

BLAST of Cla97C10G185610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965371.1	2.7e-92	96.09	uncharacterized protein LOC111465250 [Cucurbita maxima]	[more]
XP_022923524.1	3.5e-92	94.97	uncharacterized protein LOC111431195 [Cucurbita moschata]	[more]
XP_023553194.1	2.3e-91	94.41	uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo]	[more]
XP_022145425.1	4.2e-90	93.85	uncharacterized protein LOC111014872 [Momordica charantia]	[more]
XP_017983786.1	1.0e-88	91.01	PREDICTED: uncharacterized protein LOC18587627 [Theobroma cacao]	[more]

BLAST of Cla97C10G185610 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0D2PMQ4\|A0A0D2PMQ4_GOSRA	9.0e-89	92.13	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G069100 PE=3 ...	[more]
tr\|A0A0A0L1P8\|A0A0A0L1P8_CUCSA	3.4e-88	91.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1	[more]
tr\|A0A1U8LI83\|A0A1U8LI83_GOSHI	1.7e-87	91.01	uncharacterized protein LOC107926724 OS=Gossypium hirsutum OX=3635 GN=LOC1079267...	[more]
tr\|A0A2P5RA57\|A0A2P5RA57_GOSBA	1.7e-87	91.01	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19372 PE=3 SV...	[more]
tr\|A0A2P5XU43\|A0A2P5XU43_GOSBA	1.7e-87	91.01	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13777 PE=3 SV...	[more]

BLAST of Cla97C10G185610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P36525\|RM24_YEAST	5.4e-12	42.05	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
sp\|A0L5U1\|RL28_MAGMM	5.1e-10	45.07	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
sp\|A9HS05\|RL28_GLUDA	3.3e-09	40.00	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
sp\|Q5FUP5\|RL28_GLUOX	5.6e-09	34.34	50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rp...	[more]
sp\|O60091\|RM24_SCHPO	9.5e-09	37.38	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of Cla97C10G185610 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31460.1	1.0e-74	76.33	Ribosomal L28 family	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR034704	L28p-like
IPR001383	Ribosomal_L28
IPR037147	Ribo_L28/L24_sf
IPR026569	Ribo_L28/L24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G185610.1	Cla97C10G185610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 46..103 e-value: 3.9E-19 score: 68.5
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 34..196
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	G3DSA:2.30.170.40		coord: 3..142 e-value: 3.1E-39 score: 135.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..220
None	No IPR available	PANTHER	PTHR13528:SF2	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 34..196
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 42..110 score: 14.203
IPR034704	L28p-like	SUPERFAMILY	SSF143800	L28p-like	coord: 43..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G185610	Cla008867	Watermelon (97103) v1	wmwmbB056
Cla97C10G185610	Csa3G005030	Cucumber (Chinese Long) v2	cuwmbB181
Cla97C10G185610	MELO3C013792	Melon (DHL92) v3.5.1	mewmbB430
Cla97C10G185610	ClCG10G000990	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G185610	CSPI03G00990	Wild cucumber (PI 183967)	cpiwmbB184
Cla97C10G185610	Cucsa.322380	Cucumber (Gy14) v1	cgywmbB562
Cla97C10G185610	CmaCh16G012200	Cucurbita maxima (Rimu)	cmawmbB337
Cla97C10G185610	CmoCh16G012630	Cucurbita moschata (Rifu)	cmowmbB320
Cla97C10G185610	Lsi07G011290	Bottle gourd (USVL1VR-Ls)	lsiwmbB395
Cla97C10G185610	CsGy3G000940	Cucumber (Gy14) v2	cgybwmbB174
Cla97C10G185610	MELO3C013792.2	Melon (DHL92) v3.6.1	medwmbB415
Cla97C10G185610	Carg19495	Silver-seed gourd	carwmbB0453
Cla97C10G185610	Carg23563	Silver-seed gourd	carwmbB1107
Cla97C10G185610	CsaV3_3G001030	Cucumber (Chinese Long) v3	cucwmbB182
Cla97C10G185610	BhiUN179G4	Wax gourd	wgowmbB548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G185610	Silver-seed gourd	carwmbB0705
Cla97C10G185610	Cucurbita maxima (Rimu)	cmawmbB839
Cla97C10G185610	Cucurbita moschata (Rifu)	cmowmbB813