Carg19495 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19495
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosomal protein
Location	Cucurbita_argyrosperma_scaffold_204 : 480299 .. 483503 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCTAATTTACCGCCACGCCTTTCCTTCCCATTACTAGCCACTGTATCCCGACTCTCCCCACGCCGCTGACCTCTTCTGCCTGACGCCATCTCAACGGCTGCCGCCGCACGTTGCAGTCTCAGCCTCCCGGCGATCTCACCGCCGCTCCCTCCGTTTCACAGTCTTTCGCCTCACCGAGTAATCAGCGTTACTTGCTTTGTTGTTGTTTTTTTTATTCTTAAATATTTATTCTTCCAAATTAGGGTGTTCCGAACAAGGTTAATGTGCCGTATCTGAAATTCCGATCAATTTTACTTCGGCACTTTCTCATACATGCTTCTTCTAACCGGAATTTACTTTTTTTTTATTGCGATTCGTCGGAACGGAAATGGATCCTTAGTTTTGATTCATTTCTGTCTTGTTTGTATTCTGTGGAATTTTATCCGTTTTTCTTGATTAGTTTGTGATTTGCACTTTGCAATTTGGATCATTTGGCCGAATGTGATGCTGTTTCTATAACTAGCCGGTGATTAAGGTGTAGATAATGATAAGTGATAACTAAGGTGAATGGCGTCATTTTCCGATTTCCGACTGATTAGATTGAATATTTCTCACCTTTTCCTTTTCTGTGATGGATTTTTCTTTCTCCGGCGAAGGTTTTTTTTGCTGATGGATTTTGTGCTGCTTCCTAGGTGATAACAGAGCAACGGACTGTAACAACGCAAATTGCTTATGAAAACTCTATTCTTAAGCAAGTCCTGCTGCACAAAATACAGTCCCCAACCTGTACCGTTTGGAATTTCATCGAGCTTGATCTTCTGTCTGTAGAAGCTTGTTGGCAGTAATTCAAACTCATTTTCGCAGATCGTTCTACTTCTGTTCCTATTGTTTGGAGTATTTTTGGATCACAGCTGATTCTACAAGAGAGAGTCGAAAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTATGAACCTCTTTTCTTTCCTTTATTTTTTTCAAAATCTATGGTCGATTCTCTCTGAATTTGGATGCATTTTATTGATTTGCCGAATTCCGTGGTTCGAAACCATTAGTCCCTTTCCCAATATGAGCATAGCTTAACGGTTAAAGGATATCATGTTAAGCCCAAGCCTGCCGCTAGCCGATATTGAACTCTTTGAACTTTCCCTTTTGAGCTTCCCCTCAAGATTTTAAAACGCGTCCACTATGGAGAGGTTTCCACACCCTTGTAAGAAATGTTTCGTTCCCCTCTCCAACCAATGTGGGATCTCATAATCCACCCCCTTGGAGGTTAGCGTCCTTGCTCTAACACACTGCCCAGTGTCTGATTTTGATACCATTTGTAATAGCCTAAGTCCACCGCTAACAAATATTGTCCTCTTTGAGATTTCCCTACTGGGCTTCCCCTCAAGGTTTTAAAATGCATCTACTATGGAGAAGTTTCCACACTCTTGTAAGAAATGTTTCATCCCCCTCTCCAACCAATGTAGGATCTCACAATCCACCTCCTTGGAGGTCAGTGTGACACACCGCCCAGTGTCTGGCTCTGATACCATTTGTAATAGCCTAAGCCTACTGCTAACAGATATTGTTCTCTTTGAGATTTCCCTACTGGACTTCCTCTCAAGGTTTTAAAACGTGTCTACTAGGGAGAGATTTCCACACCCTTGTAAGGAATGTTTCGTTCCCCTCTCCAACCAAGGTGGGATCTCATAATCCACCCCCTTGGAGGTCAGCGTCCTCACTGACACATTACCCGGTGTCTGGCTCTGATACCATTTGTAATAGTCTAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGATTTCTCTGTTGGCCTTCCCCTCAAGGTTTTAAAATGCGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCTCCTCTTCAACCAATGTGAGATCTCACACATCAACCTCTACCTTTTTTTTTTTTTTCCTTCGAACTAGTTCAAATTTCCACACCCACACCAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTTAGTCCCTTTTAATTGCATAGCTTGATTTATTGTTTTTTACAATTGCAAGTGAAGGCGCCATAAATGAATAAATTCATAGCATCAAAGACATTTGGCAGAAAATTCTTGCTGTTACTATTTCAAAACTTTACGTCTTTGTGTTCATGCTTCTGATTTTTTCTTATCTGTTTGTTGCTGCCTTCTTGATGAGTGTTTGGATTTTGGATGCGGGGTTAGCATATGAATCAATTGTTCTGCTAAAACTTCTTAACCACACTACTTGATTACGACTTGTAGTTAGAATCAAGTGGAGATTTTGTAATTGCTTTGCTCTGAGGTTTTTATGCCCCACTCCTTTTGTCAATCTATGAACATGTGGAAGAACCCTAAGATAGGGTGATTGGGGGCGTGAAGTCGGGCTTCAGCGTGTGTCTCGCTTCCTAAGCCCAACAGCCCCGACCCTCTGTTTGACAATCCAAGTTCGAGAAACCAACCGGCTCAAACAACATCCTACTATTCAACCCCTCCTTTGCTCACTATTTCGACCCAGGCTTCCTAAACTTGTGCCCCCAAATACAGAACCTGTGAACCCAAATGATCCATTAGATTTTGGGAAGAGAAAATGAACTTATAGTTGTGTTTCCTTCTGTGTGTGAACGTTATTGGTTTTTGCTTTATGTTTGTAGCCTTATATTTACATGTCAAGGGTATGCCTCTCTTGCTCTTGTATTCAGAAATTCGAGAGCACGATATAATAATTTCGTTTTCTTCCTTTGTTTCGGCCTTATGTCATATAAGGGTTCGGTGCGTTTTACGATTATTTACGATGATTTTGTCATGCTATCAATTTTCAATTTTGGAGTATTAGCCGTAATGTGCTGGTGCTTATAGGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCACAAGCCGTGGATTGATGAGTATTCTTGACTGA

mRNA sequence

AAACCCTAATTTACCGCCACGCCTTTCCTTCCCATTACTAGCCACTGTATCCCGACTCTCCCCACGCCGCTGACCTCTTCTGCCTGACGCCATCTCAACGGCTGCCGCCGCACGTTGCAGTCTCAGCCTCCCGGCGATCTCACCGCCGCTCCCTCCGTTTCACAGTCTTTCGCCTCACCGAGTGATAACAGAGCAACGGACTGTAACAACGCAAATTGCTTATGAAAACTCTATTCTTAAGCAAGTCCTGCTGCACAAAATACAGTCCCCAACCTGTACCGTTTGGAATTTCATCGAGCTTGATCTTCTGTCTGTAGAAGCTTGTTGGCAGTAATTCAAACTCATTTTCGCAGATCGTTCTACTTCTGTTCCTATTGTTTGGAGTATTTTTGGATCACAGCTGATTCTACAAGAGAGAGTCGAAAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCACAAGCCGTGGATTGATGAGTATTCTTGACTGA

Coding sequence (CDS)

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCACAAGCCGTGGATTGATGAGTATTCTTGACTGA

Protein sequence

MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRGLMSILD

Homology

[Close]

BLAST of Carg19495 vs. NCBI nr
Match: XP_022923524.1 (uncharacterized protein LOC111431195 [Cucurbita moschata])

HSP 1 Score: 208.0 bits (528), Expect = 1.7e-50
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCI   G
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAG 105

[Close]

BLAST of Carg19495 vs. NCBI nr
Match: XP_022965371.1 (uncharacterized protein LOC111465250 [Cucurbita maxima])

HSP 1 Score: 205.3 bits (521), Expect = 1.1e-49
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VMNRAKRGIFAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCI   G
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAG 105

[Close]

BLAST of Carg19495 vs. NCBI nr
Match: XP_023553194.1 (uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 1.1e-49
Identity = 101/105 (96.19%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNKSRRNWKPNVQ KRLFSYILDRHIRVKVTTHALRCI   G
Sbjct: 61  EDGGNKSRRNWKPNVQGKRLFSYILDRHIRVKVTTHALRCIDKAG 105

[Close]

BLAST of Carg19495 vs. NCBI nr
Match: XP_004146126.1 (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus] >KGN55688.1 hypothetical protein Csa_3G005030 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 2.6e-48
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCI   G
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAG 105

[Close]

BLAST of Carg19495 vs. NCBI nr
Match: XP_022145425.1 (uncharacterized protein LOC111014872 [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 1.0e-47
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK+LKKVGE NLAPGVK+SLKKCIPDSK+VMNRAKRGIFAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKVLKKVGEINLAPGVKESLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCI   G
Sbjct: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVG 105

[Close]

BLAST of Carg19495 vs. TAIR10
Match: AT4G31460.1 (Ribosomal L28 family)

HSP 1 Score: 173.3 bits (438), Expect = 8.2e-44
Identity = 79/105 (75.24%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+K+VM RAKRG++AGRHIQ+GNR+S
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCI   G
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAG 105

[Close]

BLAST of Carg19495 vs. Swiss-Prot
Match: sp|P36525|RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 9.1e-08
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 30  KKCIPDSKI----VMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G++ G  +QFGN ISE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCITSRG 106
           +R I +K+T   L+ I+  G
Sbjct: 112 NRKISIKMTAKVLKTISKEG 130

[Close]

BLAST of Carg19495 vs. Swiss-Prot
Match: sp|B6IW31|RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmB PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.9e-05
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 50  GRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           G+ +Q GN +S    NKSRR W PN+QE  L S  L R +R++++T+ +R I  +G
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKG 63

[Close]

BLAST of Carg19495 vs. Swiss-Prot
Match: sp|B4SNN0|RL28_STRM5 (50S ribosomal protein L28 OS=Stenotrophomonas maltophilia (strain R551-3) OX=391008 GN=rpmB PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05
Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 49  AGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRGLMS 108
           +G+ +Q GN +S    NK+RR + PN+ E+R +    +R ++++V+ HALR I   G+ S
Sbjct: 8   SGKRVQTGNNVSH-ANNKTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDS 67

Query: 109 IL 111
           +L
Sbjct: 68  VL 68

[Close]

BLAST of Carg19495 vs. Swiss-Prot
Match: sp|B2FNE3|RL28_STRMK (50S ribosomal protein L28 OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=rpmB PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05
Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 49  AGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRGLMS 108
           +G+ +Q GN +S    NK+RR + PN+ E+R +    +R ++++V+ HALR I   G+ S
Sbjct: 8   SGKRVQTGNNVSH-ANNKTRRRFLPNLHERRFWVASENRWVKLRVSAHALRTIDKNGIDS 67

Query: 109 IL 111
           +L
Sbjct: 68  VL 68

[Close]

BLAST of Carg19495 vs. Swiss-Prot
Match: sp|A0L5U1|RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rpmB PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.2e-05
Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 43  AKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIT 102
           A++    G+  Q GN++S     K+RR W PN+Q K L+S  L + ++V ++T ALR + 
Sbjct: 2   ARKRTLGGKAPQAGNKVSH-SQRKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 SRG 106
           + G
Sbjct: 62  NAG 63

[Close]

BLAST of Carg19495 vs. TrEMBL
Match: tr|A0A0A0L1P8|A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.8e-48
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCI   G
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAG 105

[Close]

BLAST of Carg19495 vs. TrEMBL
Match: tr|A0A2P4IE11|A0A2P4IE11_QUESU (54s ribosomal protein l24, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_63905 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-46
Identity = 90/105 (85.71%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK+LK VGE NLAPG+K+SLKKCIPDSK+VM RAKRG++AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKVLKNVGEKNLAPGLKESLKKCIPDSKVVMGRAKRGLYAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNKSRR WKPNVQEKRLFSY+LDRHIRVKVTTHALRCI   G
Sbjct: 61  EDGGNKSRRTWKPNVQEKRLFSYVLDRHIRVKVTTHALRCIDKAG 105

[Close]

BLAST of Carg19495 vs. TrEMBL
Match: tr|A0A251IVW1|A0A251IVW1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G086700 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.8e-46
Identity = 92/105 (87.62%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MA+RGKEMMKK+LKKVGENNL PGVK+SLKK IPDSK+VM RAKRG+FAGRHIQFGNRIS
Sbjct: 1   MAYRGKEMMKKVLKKVGENNLTPGVKESLKKSIPDSKVVMGRAKRGLFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNK+RR WKPNVQEKRLFSYILDRHIRVKVTTHALRCI   G
Sbjct: 61  EDGGNKTRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAG 105

[Close]

BLAST of Carg19495 vs. TrEMBL
Match: tr|A0A1S3BK21|A0A1S3BK21_CUCME (54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.2e-46
Identity = 93/105 (88.57%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVK+SLKK +PDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCI   G
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAG 105

[Close]

BLAST of Carg19495 vs. TrEMBL
Match: tr|A0A2P4JP27|A0A2P4JP27_QUESU (54s ribosomal protein l24, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_71970 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.2e-46
Identity = 89/105 (84.76%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK+LK VGEN+LAPG+++SLKKCIPDSK+VM RAKRG++AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKVLKNVGENSLAPGLRESLKKCIPDSKVVMGRAKRGLYAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCITSRG 106
           EDGGNKSRR WKPNVQEKRLFSY+LDRHIRVKVTTHALRCI   G
Sbjct: 61  EDGGNKSRRTWKPNVQEKRLFSYVLDRHIRVKVTTHALRCIDKAG 105

The following BLAST results are available for this feature:

BLAST of Carg19495 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923524.1	1.7e-50	97.14	uncharacterized protein LOC111431195 [Cucurbita moschata]	[more]
XP_022965371.1	1.1e-49	94.29	uncharacterized protein LOC111465250 [Cucurbita maxima]	[more]
XP_023553194.1	1.1e-49	96.19	uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo]	[more]
XP_004146126.1	2.6e-48	92.38	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus] >KGN55688....	[more]
XP_022145425.1	1.0e-47	91.43	uncharacterized protein LOC111014872 [Momordica charantia]	[more]

BLAST of Carg19495 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31460.1	8.2e-44	75.24	Ribosomal L28 family	[more]

BLAST of Carg19495 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P36525\|RM24_YEAST	9.1e-08	37.50	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
sp\|B6IW31\|RL28_RHOCS	1.9e-05	42.86	50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
sp\|B4SNN0\|RL28_STRM5	5.5e-05	37.10	50S ribosomal protein L28 OS=Stenotrophomonas maltophilia (strain R551-3) OX=391...	[more]
sp\|B2FNE3\|RL28_STRMK	5.5e-05	37.10	50S ribosomal protein L28 OS=Stenotrophomonas maltophilia (strain K279a) OX=5223...	[more]
sp\|A0L5U1\|RL28_MAGMM	7.2e-05	36.51	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]

BLAST of Carg19495 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1P8\|A0A0A0L1P8_CUCSA	1.8e-48	92.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1	[more]
tr\|A0A2P4IE11\|A0A2P4IE11_QUESU	3.7e-46	85.71	54s ribosomal protein l24, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_6390...	[more]
tr\|A0A251IVW1\|A0A251IVW1_MANES	4.8e-46	87.62	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G086700 PE=3 SV=...	[more]
tr\|A0A1S3BK21\|A0A1S3BK21_CUCME	6.2e-46	88.57	54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718...	[more]
tr\|A0A2P4JP27\|A0A2P4JP27_QUESU	6.2e-46	84.76	54s ribosomal protein l24, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_7197...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR034704	L28p-like
IPR037147	Ribo_L28/L24_sf
IPR026569	Ribo_L28/L24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19495-RA	Carg19495-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 46..102 e-value: 5.5E-18 score: 64.8
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 33..105
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	G3DSA:2.30.170.40		coord: 3..107 e-value: 1.4E-27 score: 98.1
None	No IPR available	PANTHER	PTHR13528:SF2	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 33..105
IPR034704	L28p-like	SUPERFAMILY	SSF143800	L28p-like	coord: 43..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19495	Cla008867	Watermelon (97103) v1	carwmB0425
Carg19495	Csa3G005030	Cucumber (Chinese Long) v2	carcuB0462
Carg19495	MELO3C013792	Melon (DHL92) v3.5.1	carmeB0437
Carg19495	ClCG10G000990	Watermelon (Charleston Gray)	carwcgB0421
Carg19495	CSPI03G00990	Wild cucumber (PI 183967)	carcpiB0467
Carg19495	Cucsa.322380	Cucumber (Gy14) v1	carcgyB0496
Carg19495	CmaCh16G012200	Cucurbita maxima (Rimu)	carcmaB0596
Carg19495	CmoCh16G012630	Cucurbita moschata (Rifu)	carcmoB0581
Carg19495	Lsi07G011290	Bottle gourd (USVL1VR-Ls)	carlsiB389
Carg19495	Cp4.1LG14g10040	Cucurbita pepo (Zucchini)	carcpeB0601
Carg19495	CsGy3G000940	Cucumber (Gy14) v2	carcgybB0438
Carg19495	MELO3C013792.2	Melon (DHL92) v3.6.1	carmedB0439
Carg19495	CsaV3_3G001030	Cucumber (Chinese Long) v3	carcucB0462
Carg19495	Cla97C10G185610	Watermelon (97103) v2	carwmbB0453
Carg19495	BhiUN179G4	Wax gourd	carwgoB0517

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None