BhiUN179G4 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN179G4
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ribosomal protein L28
Location	Contig179 : 41447 .. 44954 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAATCTTAAGTTTTTCTTGCTTCCTAAACCCTATTTCCCGTCTTGCCACTCCATTCCGTTCTATTACCAGCCACTGCACTCCACCTCCGCCGCTCGCCGTTCACCTCTCACTCTCAGCCGCCGCTGTTTCAGCCTCCCGACGAAATCTCCGACGCTCCCTCCCTTTCACACTCTCTTGCCTCTCCGAGCAATCAGAGTTACTTGTCTTCGTCTTTTTTTTTTTTTTTTTTTTCCTTCATCAAATATTTGAAATCCTTCCATATTCAGGGATTCCGAAGAGGGCTAAGGTACCATATCTGAAATTCCAATTGCTCCTGCACTTTCTCAATACATACTTCCTCTAATCTGAATTTCAGATTATTGTTTCTGGCTTTCATTACTTTCTTATTGTGATTCGTTGGAACGGAAATGGATCCTTGGTTTTTATTCATTTCTGTTTTGATTGTTTTCTGTTGAATTTGATCTGTTTTTCTGGATTTGAGTATGATTTGCACTTTGGATCATTTGGCCGAATCTGATGTTGTTACTATAGCTAGCCGGGGATTAAGGTGTAGATAGTGATAAGTGGTAACTGAGTGAATCAATGTTGTGAATCTATTATGCATCTATTGGTCTTTTGTGATTTCGCTCAATCTTTTTGGGAAAGAATGCTACATTACTTCAACTATCAAATGGTCTTTCCTAAAGACCCTCTCACCTTATTGAATTCCTTGTTTATTGGCCATCCATTCAAAGCTAAAAGGAAGATATTTAGGACTTTCATCATCAAAGCTTTCCTTTGACTCATTTGGAACGAGCGAAACAATAGGATCTTTGAAGAAAAAGTATCAAATTTCTCACAATTCTTTGATCATCACTTGTACACAGCTCTCACTTTGTGTAAATTAACCCCACACTTTTGTGATTACAATCTTACGTCTCTTATTATGCAATGGACTACGATTATGTAACCATCCACGACCTTTACGTCTTTTTGTAATTTCATATATGAAATTATTCTGAATGTTTCCTATAAAAAAAAATAGTAACTGAGTGAATGGCATCATTTTCCGATTTCCGACTGATTCGACCGGATATTTCTCATATTTTCCCTTTCAGCTGATGGATTTTTCTTTCCTTTCCGCAGTTTTTTTTTTCCCTGATGATTTTTGTGTTGCTTCCTAGGTATATACAGACGCATGGACTGAAACAAAACAAATAGCTGATGAGAACTTTATTCCTTCTCAAATCCTGCTGCTCAAAATACAGCCCGCAACCTATACATAGTGGAATTTCATCGAGCTTGATTTTCTTTCTGTAGAAGCTTGTTGGCAGTAATTCAAGGTCGTTTTTGCAGATTGTTTTACTTCTGTTCCTATTTTTTAGGAGTATATTTGGATTACGGTTGATTATACGAGAGAGAGAGTCCATAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAAAAATTTGGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACAGCAAAATAGTGATGAATAGAGCAAACCGTGGTATTTATGCTGGCCGTCACATCCGATTCGGCAACCGTGTCAGTGAAGACGGTGGCAACAAGTATGAACCTCTTTTATTTCCTTTACTTTCTTAAAAATCTTTTGTCGAGATTCTCTCTGAATATGAATGCATTTTACTGATTTGCCAAATTCTTTGGTGCTAGACCATTAGTGTCTTTGCCAATATGAGTTAAGGCATCTACATCTACTCCTTCTTTCTTTGGGGTGTTGCATATTCAAATTTCCACACCCTCATTGTACCCCAAAAGAGAGAGAGCTCATTTTTCTTTTTGGAAAAGAAACAATTTCATTGATGGTATGAAATTACAAAAAAGGTAGGTGTCATGAGATGGATTACAAAAGATCTCTCCAATTGGAGAGGAGGGAGGAATAGCTATGGGGATGGAAGAGGGGAAACAGTTGCACTAAAAAGCTACCAAGTTAACTATAGCTTAAAAACATCTGTGATAGAGTAGTTCTTATCTTGGAAGATCCGATTGTTTTTTTCTTGTCAAGTTATCCATCAAAAGGCTTTTACAAAATCTCCCTTTTAATTTCTTTATTTTTCTTTTAGTCCCTTTAATTGGAGGTCTTTTGTAAATCTCCCTAATGGGATTCTATCTTTTGTAATTTCATACCGTTGATGAAATTATTTCTTATTGAAAACAAAAAGGCATGGCAAGTGAAGGCGGCAAGGAAATTTGGCAGAAAATTCTTCCTTTTACCATTGGTATTTTCTTTTAGAGGTTTGAAGAAGCTATTGGTATTGCTGTATTGGTAGCGGAGCTTTCAGCATTCGTTTGCAAGTTCTCATCGTCCTTAGATTAGTTCTCTGTTTTTTATTTGGTTGTATTTTCTATCTGTTGATTTTTTCCCTCTTTTTCTCTTCCTTTGAGAGTTTATTTCCCTTCCTGAGAATGAGAAGTCGTTTCTGATAACAAAAACTCGTGTTTCCTTCTGAGTTCTGCGTGCAAACTATATATTGGTTTTTGTTGAATCTTTGTAGCCTTTTATTTACATGTCTATATTTACATGTCTAGGGTATGCCTCTCTCTCTTGTATTCTGAAATTTGAGGCACAATATTATTAATTTCATGTTCTTCCTTTGTATTATTGGCTTTATGTCATATAAAGGTTGGGTGCCTTTTTTTTTTTTAATTCTTTTGCTTACAAACCTTCATATTGGCATATGATCTTATACCGTTTTAATATTGTCATGAAATCATTTTTCAATTTTGGATCATTTAGCCTTTATATGCTGGTGACTATAGGTCAAGGAGGAGTTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTAGATGCATCGACAAGGCTGGTGGAATTGACGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGACAAAGATCGAGAAGATGTATGAAGAACTTGGGCAGATGGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGAACTGAAATTAACTGAAAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCGACCAAACACGATCAGATCAAAGAGGGCCAAGAAGACCGCCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGTTCCCATGGCGATGATGGTCATCAGCAGAAGGTTGCCAACGCTTAATTATTTATAGATGACTTTTTTCTCAACTTGGGAGCTTAAGCCTCGACTTTTTCTCATCTCTTTCCAAGGATTTGTTTCCTCATTTTTCACTATAACCTTTTGTAGCTTATTTGTATTTTGTTTAATGTAAACAGTTAGAAATGAGAATTGTTTTCGGAAATTAAGATGTGAAATCTTAAAACTAAGTATTGTTCAATAAGATTTGAGATTTGAAGTTTGTG

mRNA sequence

TTTAAATCTTAAGTTTTTCTTGCTTCCTAAACCCTATTTCCCGTCTTGCCACTCCATTCCGTTCTATTACCAGCCACTGCACTCCACCTCCGCCGCTCGCCGTTCACCTCTCACTCTCAGCCGCCGCTGTTTCAGCCTCCCGACGAAATCTCCGACGCTCCCTCCCTTTCACACTCTCTTGCCTCTCCGAGCAATCAGAGTTACTTGTCTTCGTCTTTTTTTTTTTTTTTTTTTTCCTTCATCAAATATTTGAAATCCTTCCATATTCAGGGATTCCGAAGAGGGCTAAGGTATATACAGACGCATGGACTGAAACAAAACAAATAGCTGATGAGAACTTTATTCCTTCTCAAATCCTGCTGCTCAAAATACAGCCCGCAACCTATACATAGTGGAATTTCATCGAGCTTGATTTTCTTTCTGTAGAAGCTTGTTGGCAGTAATTCAAGGTCGTTTTTGCAGATTGTTTTACTTCTGTTCCTATTTTTTAGGAGTATATTTGGATTACGGTTGATTATACGAGAGAGAGAGTCCATAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAAAAATTTGGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACAGCAAAATAGTGATGAATAGAGCAAACCGTGGTATTTATGCTGGCCGTCACATCCGATTCGGCAACCGTGTCAGTGAAGACGGTGGCAACAAGTCAAGGAGGAGTTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTAGATGCATCGACAAGGCTGGTGGAATTGACGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGACAAAGATCGAGAAGATGTATGAAGAACTTGGGCAGATGGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGAACTGAAATTAACTGAAAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCGACCAAACACGATCAGATCAAAGAGGGCCAAGAAGACCGCCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGTTCCCATGGCGATGATGGTCATCAGCAGAAGGTTGCCAACGCTTAATTATTTATAGATGACTTTTTTCTCAACTTGGGAGCTTAAGCCTCGACTTTTTCTCATCTCTTTCCAAGGATTTGTTTCCTCATTTTTCACTATAACCTTTTGTAGCTTATTTGTATTTTGTTTAATGTAAACAGTTAGAAATGAGAATTGTTTTCGGAAATTAAGATGTGAAATCTTAAAACTAAGTATTGTTCAATAAGATTTGAGATTTGAAGTTTGTG

Coding sequence (CDS)

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAAAAATTTGGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACAGCAAAATAGTGATGAATAGAGCAAACCGTGGTATTTATGCTGGCCGTCACATCCGATTCGGCAACCGTGTCAGTGAAGACGGTGGCAACAAGTCAAGGAGGAGTTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTAGATGCATCGACAAGGCTGGTGGAATTGACGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGACAAAGATCGAGAAGATGTATGAAGAACTTGGGCAGATGGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGAACTGAAATTAACTGAAAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCGACCAAACACGATCAGATCAAAGAGGGCCAAGAAGACCGCCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGTTCCCATGGCGATGATGGTCATCAGCAGAAGGTTGCCAACGCTTAA

Protein sequence

MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSSTKHDQIKEGQEDRHGSSEEAASSEGGSHGDDGHQQKVANA

Homology

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BLAST of BhiUN179G4 vs. TAIR10
Match: AT4G31460.1 (Ribosomal L28 family)

HSP 1 Score: 276.2 bits (705), Expect = 1.8e-74
Identity = 128/169 (75.74%), Postives = 150/169 (88.76%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK++KKVG +N+ P +K+ LK C+PD+K+VM RA RG+YAGRHI++GNRVS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAAR 170
           TE+GL+WKTK+E  Y ELGQMEV FF+PEDEAK EQGF++L + ++ AR
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDAR 169

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BLAST of BhiUN179G4 vs. Swiss-Prot
Match: sp|P36525|RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 30  KKCIPDSKI----VMNRANRGIYAGRHIRFGNRVSEDGGNKSRRSWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++N+G+Y G  ++FGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLK 114
           +R I +K+T   L+ I K GGID YL K
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTK 138

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BLAST of BhiUN179G4 vs. Swiss-Prot
Match: sp|A0L5U1|RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 43  ANRGIYAGRHIRFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A +    G+  + GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSH-SQRKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

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BLAST of BhiUN179G4 vs. Swiss-Prot
Match: sp|A9HS05|RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) OX=272568 GN=rpmB PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.3e-09
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 50  GRHIRFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++  GG+D 
Sbjct: 9   GKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVEHNGGLDA 68

Query: 110 YLLKTPYHKMDTE 123
           +LL TP  K+ TE
Sbjct: 69  FLLSTPNRKLPTE 80

[Close]

BLAST of BhiUN179G4 vs. Swiss-Prot
Match: sp|Q5FUP5|RL28_GLUOX (50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rpmB PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 50  GRHIRFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T  +R ++  GG+D 
Sbjct: 9   GKGVLTGNNVSH-ANNKSRRRFLPNLQETTLISDILGASVRMRLSTDGIRTVEHNGGLDS 68

Query: 110 YLLKTPYHKMDTE 123
           +LL TP  K+ TE
Sbjct: 69  FLLGTPNRKLPTE 80

[Close]

BLAST of BhiUN179G4 vs. Swiss-Prot
Match: sp|O60091|RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 40/107 (37.38%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 8   MMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVSEDGGNKS 67
           M  K+L+K+    L   VK  +    P SK   N     +Y G     GN      G+K+
Sbjct: 1   MASKLLRKLAYPTLP--VKGKIYD--PFSKFQQN-----LYGGSKTEAGNNKIPKFGHKT 60

Query: 68  RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKT 115
           RR W PN   K L+S +L+    + VT+  LR IDK GG+DEYL+K+
Sbjct: 61  RRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKEGGLDEYLVKS 98

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BLAST of BhiUN179G4 vs. TrEMBL
Match: tr|A0A0A0L1P8|A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 6.0e-93
Identity = 174/191 (91.10%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSKIVM RANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+MEVVFFSPEDE KFEQ F+ELKL+ERAAR+EARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TKHDQIKEGQE 192
            K +QIKEG E
Sbjct: 181 AKLNQIKEGGE 191

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BLAST of BhiUN179G4 vs. TrEMBL
Match: tr|A0A1S3BK21|A0A1S3BK21_CUCME (54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.2e-88
Identity = 187/221 (84.62%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVK+SLKK +PDSKIVM RANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180
           TE+GLFWK KIE +YEELG+MEVVFFSPEDEAKFEQ F++LKL+ERAARKEARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 T-KHDQIKEGQEDRHGS-XXXXXXXXXGSHGDDGHQQKVAN 220
           T K +QIKEG ED + S XXXXXXXXX       HQQ VAN
Sbjct: 181 TNKLNQIKEGGEDTNVSXXXXXXXXXXXXXXXXXHQQWVAN 221

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BLAST of BhiUN179G4 vs. TrEMBL
Match: tr|A0A0D2PMQ4|A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 3.4e-88
Identity = 164/187 (87.70%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSK+VMNRA RG+YAGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180
           TE+GLFWK KIEKMYEELGQMEVVFFSPEDEAKFEQGF+ELKL ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TKHDQIK 188
            K ++I+
Sbjct: 181 GKLEEIE 187

[Close]

BLAST of BhiUN179G4 vs. TrEMBL
Match: tr|A0A218WXL8|A0A218WXL8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028906 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 5.9e-88
Identity = 164/194 (84.54%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60
           MAFRG+EMMKK+LKKVGE NLAPGVK+SL+KCIP SKIVM RANRGI+AGRHIRFGNRVS
Sbjct: 1   MAFRGREMMKKVLKKVGEDNLAPGVKESLEKCIPKSKIVMGRANRGIFAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180
           TE+GL+WK KIEK+YEELG+MEVVFFSPEDEAKFEQGF++LKL ERA R+E RRQMYG S
Sbjct: 121 TELGLYWKAKIEKLYEELGKMEVVFFSPEDEAKFEQGFKDLKLEERATRREFRRQMYGGS 180

Query: 181 TKHDQIKEGQEDRH 195
           +K    ++  ED H
Sbjct: 181 SKPKLGEDRTEDNH 194

[Close]

BLAST of BhiUN179G4 vs. TrEMBL
Match: tr|A0A2I4EDZ6|A0A2I4EDZ6_9ROSI (uncharacterized protein LOC108988738 OS=Juglans regia OX=51240 GN=LOC108988738 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.0e-87
Identity = 169/220 (76.82%), Postives = 190/220 (86.36%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKV-GEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRV 60
           MAFRGKEMMKK+LK V GEKNLAPG+K+SLKKCIPDSK+VM RA RG++AGRHI+FGNRV
Sbjct: 1   MAFRGKEMMKKVLKNVGGEKNLAPGLKESLKKCIPDSKVVMGRAKRGLFAGRHIQFGNRV 60

Query: 61  SEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KM
Sbjct: 61  SEDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKM 120

Query: 121 DTEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGS 180
           DTE+GL+WK KIEK+YEELG+MEVVFFSPEDE KFEQGF++LKL+ERAAR+EARRQMYG 
Sbjct: 121 DTEMGLYWKAKIEKLYEELGKMEVVFFSPEDEDKFEQGFKDLKLSERAARREARRQMYGL 180

Query: 181 STKHDQIKEGQEDRHGSXXXXXXXXXGSHGDDGHQQKVAN 220
           S KH +I+ GQ +   +         GS   D  +Q VAN
Sbjct: 181 SNKHGEIEGGQVEGQVTDEDAARTGDGSSHHDFPEQLVAN 220

[Close]

BLAST of BhiUN179G4 vs. NCBI nr
Match: XP_022923524.1 (uncharacterized protein LOC111431195 [Cucurbita moschata])

HSP 1 Score: 385.6 bits (989), Expect = 1.2e-103
Identity = 194/220 (88.18%), Postives = 204/220 (92.73%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSKIVMNRA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180
           TEIGLFWK KIEK+YEELGQMEVVFFSPEDEAKFEQGFR+LKL+ERAARKEARR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180

Query: 181 TKHDQIKEGQEDRHGSXXXXXXXXXGSHGDDGHQQKVANA 221
           T+HDQI+EGQ DR GS         GSHGDDG QQ VANA
Sbjct: 181 TQHDQIEEGQADRAGSSEEVAGSEGGSHGDDGPQQCVANA 220

[Close]

BLAST of BhiUN179G4 vs. NCBI nr
Match: XP_023553194.1 (uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 9.1e-101
Identity = 190/220 (86.36%), Postives = 201/220 (91.36%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSKIVMNRA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQ KRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQGKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180
           TEIGLFWK KIEK+YEELGQMEVVFFSPEDEAKFEQGFR+LKL+ERAARKEARR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180

Query: 181 TKHDQIKEGQEDRHGSXXXXXXXXXGSHGDDGHQQKVANA 221
           T+HDQI+EGQ DR  S         GSHG DG QQ V+NA
Sbjct: 181 TQHDQIEEGQADRAESSEEVAGSEGGSHGGDGPQQWVSNA 220

[Close]

BLAST of BhiUN179G4 vs. NCBI nr
Match: XP_022145425.1 (uncharacterized protein LOC111014872 [Momordica charantia])

HSP 1 Score: 373.6 bits (958), Expect = 4.5e-100
Identity = 189/221 (85.52%), Postives = 200/221 (90.50%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLAPGVK+SLKKCIPDSK+VMNRA RGI+AGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKVLKKVGEINLAPGVKESLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180
           TEIGLFWK KI K+YEELGQMEVVFFSPEDEAKFEQGFRELKL ERAARKEARRQ YGSS
Sbjct: 121 TEIGLFWKAKITKLYEELGQMEVVFFSPEDEAKFEQGFRELKLAERAARKEARRQTYGSS 180

Query: 181 TKHDQIKEGQEDRHGS-XXXXXXXXXGSHGDDGHQQKVANA 221
           + HDQI+EG+ DRHG+          GSHGDDG QQ VANA
Sbjct: 181 SNHDQIEEGRADRHGTGKEAADGSEGGSHGDDGSQQWVANA 221

[Close]

BLAST of BhiUN179G4 vs. NCBI nr
Match: XP_022965371.1 (uncharacterized protein LOC111465250 [Cucurbita maxima])

HSP 1 Score: 370.5 bits (950), Expect = 3.8e-99
Identity = 186/211 (88.15%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VMNRA RGI+AGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180
           TEIGLFWK KIEK+YEELGQMEVVFFSPEDEAKFEQGFR+LKL+ERAARKE RR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180

Query: 181 TKHDQIKEGQEDRHGSXXXXXXXXXGSHGDD 212
           T+ DQI+EGQ DR GS         GSHGDD
Sbjct: 181 TQRDQIEEGQADRVGSSEEVAGSEGGSHGDD 211

[Close]

BLAST of BhiUN179G4 vs. NCBI nr
Match: XP_004146126.1 (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus] >KGN55688.1 hypothetical protein Csa_3G005030 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 9.1e-93
Identity = 174/191 (91.10%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSKIVM RANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+MEVVFFSPEDE KFEQ F+ELKL+ERAAR+EARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TKHDQIKEGQE 192
            K +QIKEG E
Sbjct: 181 AKLNQIKEGGE 191

The following BLAST results are available for this feature:

BLAST of BhiUN179G4 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31460.1	1.8e-74	75.74	Ribosomal L28 family	[more]

BLAST of BhiUN179G4 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P36525\|RM24_YEAST	3.2e-12	42.05	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
sp\|A0L5U1\|RL28_MAGMM	3.3e-09	43.66	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
sp\|A9HS05\|RL28_GLUDA	7.3e-09	42.47	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
sp\|Q5FUP5\|RL28_GLUOX	1.2e-08	42.47	50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rp...	[more]
sp\|O60091\|RM24_SCHPO	1.6e-08	37.38	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of BhiUN179G4 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1P8\|A0A0A0L1P8_CUCSA	6.0e-93	91.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1	[more]
tr\|A0A1S3BK21\|A0A1S3BK21_CUCME	1.2e-88	84.62	54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718...	[more]
tr\|A0A0D2PMQ4\|A0A0D2PMQ4_GOSRA	3.4e-88	87.70	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G069100 PE=3 ...	[more]
tr\|A0A218WXL8\|A0A218WXL8_PUNGR	5.9e-88	84.54	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028906 PE=3 SV=1	[more]
tr\|A0A2I4EDZ6\|A0A2I4EDZ6_9ROSI	1.0e-87	76.82	uncharacterized protein LOC108988738 OS=Juglans regia OX=51240 GN=LOC108988738 P...	[more]

BLAST of BhiUN179G4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923524.1	1.2e-103	88.18	uncharacterized protein LOC111431195 [Cucurbita moschata]	[more]
XP_023553194.1	9.1e-101	86.36	uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo]	[more]
XP_022145425.1	4.5e-100	85.52	uncharacterized protein LOC111014872 [Momordica charantia]	[more]
XP_022965371.1	3.8e-99	88.15	uncharacterized protein LOC111465250 [Cucurbita maxima]	[more]
XP_004146126.1	9.1e-93	91.10	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus] >KGN55688....	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR034704	L28p-like
IPR001383	Ribosomal_L28
IPR026569	Ribo_L28/L24
IPR037147	Ribo_L28/L24_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006457	protein folding
biological_process	GO:0006950	response to stress
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN179M4	BhiUN179M4	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	G3DSA:2.30.170.40		coord: 3..144 e-value: 2.9E-39 score: 136.0
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 48..103 e-value: 1.3E-18 score: 66.8
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 33..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..220
None	No IPR available	PANTHER	PTHR13528:SF2	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 33..194
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 40..110 score: 14.056
IPR034704	L28p-like	SUPERFAMILY	SSF143800	L28p-like	coord: 43..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
BhiUN179G4	Csa3G005030	Cucumber (Chinese Long) v2	cuwgoB337
BhiUN179G4	MELO3C013792	Melon (DHL92) v3.5.1	mewgoB561
BhiUN179G4	ClCG10G000990	Watermelon (Charleston Gray)	wcgwgoB131
BhiUN179G4	CSPI03G00990	Wild cucumber (PI 183967)	cpiwgoB340
BhiUN179G4	Cucsa.322380	Cucumber (Gy14) v1	cgywgoB655
BhiUN179G4	CmaCh16G012200	Cucurbita maxima (Rimu)	cmawgoB0450
BhiUN179G4	CmoCh16G012630	Cucurbita moschata (Rifu)	cmowgoB0447
BhiUN179G4	Lsi07G011290	Bottle gourd (USVL1VR-Ls)	lsiwgoB575
BhiUN179G4	Cp4.1LG14g10040	Cucurbita pepo (Zucchini)	cpewgoB0308
BhiUN179G4	CsGy3G000940	Cucumber (Gy14) v2	cgybwgoB327
BhiUN179G4	MELO3C013792.2	Melon (DHL92) v3.6.1	medwgoB565
BhiUN179G4	Carg19495	Silver-seed gourd	carwgoB0517
BhiUN179G4	CsaV3_3G001030	Cucumber (Chinese Long) v3	cucwgoB343
BhiUN179G4	Cla008867	Watermelon (97103) v1	wgowmB575
BhiUN179G4	Cla97C10G185610	Watermelon (97103) v2	wgowmbB548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
BhiUN179G4	Cucurbita maxima (Rimu)	cmawgoB1042
BhiUN179G4	Cucurbita moschata (Rifu)	cmowgoB1036
BhiUN179G4	Cucurbita pepo (Zucchini)	cpewgoB1137
BhiUN179G4	Silver-seed gourd	carwgoB0798