CSPI03G00990 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTGGAAAGAGTAATTTTTCTTTTAATGAAGAAAACCCTTCATTTCTTTTCATTTCTTTCGTGAGACATCCGCCGACCACCCCTCTCTGCCTTTCATCTTCTTCACCAAAGGTTGCAGTTGCTTCGACGCCGCCGCACCCCGTGATCTACTGAACGCCGCTCGTCGCTGTCCGTGGTCACCAGCGTTCTCTCTCTTCCTCTCTACCCGTTTCTCTTTACTAGTCTTCACCGCCACCGCTGCTTGACACCGTCTGTGGGTCGCGGGCTGCCGTTTAACTGTCAGAATCTTGGTTCTTGCATTTTTTTTTTGGTGGTAAGGCTTGATATTTTTGTGGGTTTTTGTTGAATTTTTACCCAATAGTTAGTCGATTATGTTTATCCATACATTGGTTCCTAGATTTGAGTTCTAAAAAAACGGGAGTGGGTTCTTGTGTTATCGGAGACTCTTTGGTTATGTGTTGGGGACTTTTTGTAGCGGATATTGGAATTTGAAGTGGTATTGAGTTAAATAGTAATTCGTTGAATGTTTAGGTGGTTCTATACTTTGCTTAGGAGGGAAGGGCTTGTTAGCTTGTAATGCATTGTTTTTGGTTCTAACTTTTAAGTGACTTATTACTGGTTTTCCCTCGATTCTAAGCTGATGTTAAAGATGTTGATGGCTAAACACGATTCTAGTATAATGGATTCAATTATTATGCTACTTTAGGGAGTTTTGGAGTTATGCTATGGAAGTTATGATACTATGCGTATCTGTTGCTATGTTTGATTGATGGACTCTTGTTCTGAATAACTCAGGAGTTAGGTTCTAAAATATGAATATGTGACTGTGATTATGTTGGAATGATGGTGATTGCAATCATTTTAACGATGTTTTGGTGACCTGTTGAGGATCGCTACTTATGATTATGTTTGGTGACTTGTCAAGGATTTCTACCTACAAGCATGCCTTTGGGTTCGCCCTTATGCCTTTGTTTACAACTATGTCGGTATGCACATAGTTTTATTAGGAATGGTTAACAGGTACATCTAGTGGGTCTAATAATGGGTCACTTGTTGAGTATTCTTATACTTGTCATTTTCAAAGGCAAGAACAAACCAACGAATGTCAAGAAGAATCTGTGATTGAGCCTATTGACGTGGCTTCTGCATACATTTTAAAAATATTTATATTTTAAAAAATTTTACAAGTTTTTTGGTTGTTTAATTATTTATTTTTTAAAATTATTTGAACTTAGATTTAGGGGTACCCTGAACGATGATTTATTGAATTTGTTTTTGAAACTTTACTTATTAAAACAATTTTGTTTCATTTAGTTGATTTTGGCCAGAAATATATTTTTAAGCTTATACATGCATGAAGTAACATCCTTGGCATGTTGGAAATATGGGACGTTACAAATGGCATCATATCCGATTTTCGCCTGATTCAACGACATATTCATTGTGTTTTTCCATTCTGCTGATAGATTTTCTTTCTTTTGTGAAGGTCTTTTTGCTGATGGGTTTTTGTGTTGCTTCTTAGGCATTTACTGAACGAAGGACTGAAACAAACTAATGGCTGATGAAAACTTCATTTCTTCTCAAATCCTGCTGCTTGAAATATAGTACCCAACCTGTACAGACTGGAATTTCATCGAGCTCAATTTTCTTTCTGTAGAAGCTTGTTGGCAGTAATTCAAGCACCTTGCTGCAGATTGTTGTACTTCTGCTCCTATTTTTGGCATTACGGTTGATTCTACAAGGGAGAGAGTCCATAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAGTATGACCCTCTTGTATACTCTTTATCTTTCTTAGAATCATTGGTTGATTTTTCTCTCTGAATTTGAATACATTTTACTTATTTTCTGAATTCTATGGTGTTAGACCAGTAGAATATGAGTTAAGGCATTAACATCTACTTCTTCTTTCTATGAGGTCTTGCATATTCAAATTTGCATGCCCTCATTGTACTGCAAAAGAGTGAGAGCTCATTGATAATATTATATTACAGAAAGGAAAAACCTCATGAGATGGATTACAAAAGATGTATCCAATTGGAAAGGAAGGAGGAAAGGAATAGCTATAGGGATGGAAGAGGGGAACGTTTACACTAAAAAACTAGATGTTAATTATAACTTATTTTTGCACTGTCTCTCTACTAGGTAAGCTTGGAACACTTTGTTAGAATTTTTTATTTGGAGCTTTGTCTTCGTAGTAAGGTTGATAGTTGGTTGATTGAAGGGCTCAACATTAGAGGTTATAGCTCAAAAGGAAACATCTTATGGAGATGTGCTACTCGGTCCCTTTTGAGGTGCATTTGGAAAGAAAGGAGTGGTAGAATTTTTTAAGATAGCTATAATTCTTTTGATTCTTTTTGGACTGTGTTGTAACACACAACTTCTTGGTGGAGTACAAATTACACCAAACACTTTTGTAATTATATTCAACAACTGGAAGGCGATCATTTTTTGGTTTCTTTTGGGGAGTCTTGTGCCTTGCTCTTAGGTTCTTCTCTTTTGTTATAGGAATATACATGTTTCTTATAAGAAGAAAAATCTGGGATAGTGTAGTTCTTTCTCTTGGAAGATTCAATTGTTTCTTTCTTGTCAATTGATCCATCAGAAGGCTCTTATGAAATCTCTCTTTTAATTTATTGTTTTTTTTCTCTCAGTACCTTTTAGTTGGTGAAGTCTTTTGTAAATCCCCCCAATGGGATCCCATCTTTTATAATTTCACACCGTTGATGAAATCATTTCTTATCCAAAACAAAAAATCACGGCAGGTGAAGGTACCCTAAATAAATTCATTGCACTTCAAATCATGATTTTTTCTTTTCAAGAAGAGAAGATTGTTGCTTCTAAGTTTTGCTGAAGTTATTTGATAGGACTTGGTCAACATTTTTATTTATCCCACGTATCAAGGGAAGTTTTGACTTTGAGAGCATCCTGTCTCTCCCAATTCTCCTCAGAGAACCACAACAAAATCACAGCCAAAAAGATCCCCTATGTAACAACACTCCCCTCTATGACAGCCTCCTCCCTCTACTTGTTACACATTATATTCGATTTTTCTTCTTCACATGCCTGCTCATAGACCATAGTGATTTGGGGCTTATCATTATTGAATTTATTGTTTTTCTGCTCTCCTTCACTTTGTATGAATAGCCACGAGTGCCGATAAAAACAATGTTCATAGATTGCTGGATCACTAACCATAACTGGAATTGGGTATTCATTGATGTAAGTTTGAAATAACGAATTGTCACGACAGCTGTTTAAGGTGAATTTTATCTTCTTTTTTATGCCTCATTTTGATAAATGTTTGCATTTGGATGCGGGGTAAGCATGAGTTTATTGTGCTTCTAGAACTCTTAAACACACTGCTTGATTAGGAAAGATCTAGAATCAAGTGGAGATTTTATTTTAATCAAATAACGTGTTTTTTATGTCCCGCTCCTATATCAATCCTCATGTATGTGGAAGATCTCTCAGGAAGGATGATTAGGGCATCAGGTGGGATTTAGTGTGTAGGTTTGGCTTCCTAAGGCAACCTTCTATTTGACAACCTAGGTTTGATTGGAGAAACTAACCGGCTTGAACAATGGCTTACCATCACAATTTTCAAGCCAAGCTTTCTAGACTTGCTCTTCAAACACAGAACCTGTGGCCCAGATGGTTAGATTTTAAGAAGAGAAAATGAACTTAAGGTTGTGTTACCTTCTAGAGGTTTGTAATTAGCTATTGGTAGTGGAGCTTCAGCATTGGTTTGCAAGCACTCACCGTCAATGTCTTAAAAAACTATCGAGGCTTACACCTTGAGGCGCTTGCCTCAAGGCAAGGCTCTAAGTTTTAGTCTCAAGACATACGCCTTTGTTGAACCATAAGAGGCGTACTCTTCTCACAAATGTGGCTTACGCCTTTGGGAAACAACATGGAAGCTTAAAATCTCTAGCCCCGCCTAGGAAAAATTATAGCAATTTGTCTAATTCTTAAAAAATATTAAGGTTTGAGCTAGGACAATTTGAACTAGGACTATTTTGACATCCTCATCAGCATTAATATTGCTATTATTAGTGATGATGAAGATGTCCTTTTAGAACTTTTTTTATTAAGTGAAAATTATGGAGGTGAAGTTTCTTTTTGCACTTTTATATAACTATCAATGTTTAGTAATACTTGATCATACCAATTTAGGTTTTGTTGTATTTAATTCATTATTTGAGGCTTACGCCTTATACTGCCTTGAGGCATCGCCTCTTGGAGAGGAAAAGCCTCAAGGCCGCCTTTAGCCTTTTAAAACATTGCTCACCGTCCTTCCATTTTTTGAACCAATTATTAGATTATTTCTAAGGTTCGTTTATTCTTTTTCATTATATTCATGAGAAGTTGTTTTCTGTTTAAAAATTCGGTTTTCTTTTGCATGGCTTTATTGGTTTTTGTTGTATTTTTGTAGACTCTTGTGTACATTTCTCGGTTTCTCTCTTATATTCTGATATTTGAGGGTGATATTATAATTTCGTGTACTTCCTTTGTATTGGCTTTATGTTATATAATAAGAGTTTGGTGCCTTTTATTAGTTCTTTTGCTCACAGACATGCATATATACATATGATCGTATCCCCTTCCTCTTGTATTTCTCTTTAATGTTTCTTGTATTTGGACGTTATACTCTTCTCATTGCATCAATAAAAGGTTCCTTTTTTGTTTTTCGAAGAAAAAAAGGAAACCTTCATATTGACATGTGATCTTATACCGTTTCATATTGTCATGCAATCACTTTTTTTTTCCAATTTTGGAGTATTTAGCCTTTATGTGTGCTGGTGCTTATAGATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTTAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAATTGCTTACAGGAGACTTTTTCTTCTTCTCAACTTGAGAGTTCAAGCTTTGACTTTTTATCCTCTCTTTCCAAAGATTTGTTTCTTCATTTTTCACTATAACCTTTTGTAGCTTATATTTGTATTTTGTTTAATATATACAGTTAGAAATGAGAATTGTTTTTGGAAATTGAGATGGGAAATCTTCAAACTTTTTGTTCAATAAGATTAGCCGTAGGCTCTGAGATTTGAAG ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTTAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAA ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTTAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAA
BLAST of CSPI03G00990 vs. Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2) HSP 1 Score: 73.6 bits (179), Expect = 3.1e-12 Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1
BLAST of CSPI03G00990 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09 Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1
BLAST of CSPI03G00990 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09 Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
BLAST of CSPI03G00990 vs. Swiss-Prot
Match: RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmB PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 6.1e-08 Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1
BLAST of CSPI03G00990 vs. Swiss-Prot
Match: RL28_RHORT (50S ribosomal protein L28 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=rpmB PE=3 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.8e-07 Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1
BLAST of CSPI03G00990 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1) HSP 1 Score: 434.1 bits (1115), Expect = 1.0e-118 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1
BLAST of CSPI03G00990 vs. TrEMBL
Match: A0A059AZQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1) HSP 1 Score: 332.8 bits (852), Expect = 3.2e-88 Identity = 169/215 (78.60%), Postives = 187/215 (86.98%), Query Frame = 1
BLAST of CSPI03G00990 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 4.3e-85 Identity = 164/206 (79.61%), Postives = 182/206 (88.35%), Query Frame = 1
BLAST of CSPI03G00990 vs. TrEMBL
Match: E0CQ81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14510 PE=3 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 1.4e-83 Identity = 166/220 (75.45%), Postives = 191/220 (86.82%), Query Frame = 1
BLAST of CSPI03G00990 vs. TrEMBL
Match: A0A068VCA3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00009057001 PE=3 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 1.8e-83 Identity = 161/221 (72.85%), Postives = 189/221 (85.52%), Query Frame = 1
BLAST of CSPI03G00990 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family) HSP 1 Score: 282.7 bits (722), Expect = 1.9e-76 Identity = 143/216 (66.20%), Postives = 171/216 (79.17%), Query Frame = 1
BLAST of CSPI03G00990 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus]) HSP 1 Score: 434.1 bits (1115), Expect = 1.5e-118 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1
BLAST of CSPI03G00990 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo]) HSP 1 Score: 388.7 bits (997), Expect = 7.1e-105 Identity = 205/223 (91.93%), Postives = 212/223 (95.07%), Query Frame = 1
BLAST of CSPI03G00990 vs. NCBI nr
Match: gi|702438258|ref|XP_010070462.1| (PREDICTED: uncharacterized protein LOC104457224 [Eucalyptus grandis]) HSP 1 Score: 332.8 bits (852), Expect = 4.6e-88 Identity = 169/215 (78.60%), Postives = 187/215 (86.98%), Query Frame = 1
BLAST of CSPI03G00990 vs. NCBI nr
Match: gi|1009136027|ref|XP_015885311.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba]) HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86 Identity = 163/200 (81.50%), Postives = 182/200 (91.00%), Query Frame = 1
BLAST of CSPI03G00990 vs. NCBI nr
Match: gi|747070067|ref|XP_011081840.1| (PREDICTED: uncharacterized protein LOC105164778 [Sesamum indicum]) HSP 1 Score: 324.7 bits (831), Expect = 1.3e-85 Identity = 167/221 (75.57%), Postives = 191/221 (86.43%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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