CSPI03G00990 (gene) Wild cucumber (PI 183967)

NameCSPI03G00990
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRibosomal L28 family
LocationChr3 : 690191 .. 695892 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGGAAAGAGTAATTTTTCTTTTAATGAAGAAAACCCTTCATTTCTTTTCATTTCTTTCGTGAGACATCCGCCGACCACCCCTCTCTGCCTTTCATCTTCTTCACCAAAGGTTGCAGTTGCTTCGACGCCGCCGCACCCCGTGATCTACTGAACGCCGCTCGTCGCTGTCCGTGGTCACCAGCGTTCTCTCTCTTCCTCTCTACCCGTTTCTCTTTACTAGTCTTCACCGCCACCGCTGCTTGACACCGTCTGTGGGTCGCGGGCTGCCGTTTAACTGTCAGAATCTTGGTTCTTGCATTTTTTTTTTGGTGGTAAGGCTTGATATTTTTGTGGGTTTTTGTTGAATTTTTACCCAATAGTTAGTCGATTATGTTTATCCATACATTGGTTCCTAGATTTGAGTTCTAAAAAAACGGGAGTGGGTTCTTGTGTTATCGGAGACTCTTTGGTTATGTGTTGGGGACTTTTTGTAGCGGATATTGGAATTTGAAGTGGTATTGAGTTAAATAGTAATTCGTTGAATGTTTAGGTGGTTCTATACTTTGCTTAGGAGGGAAGGGCTTGTTAGCTTGTAATGCATTGTTTTTGGTTCTAACTTTTAAGTGACTTATTACTGGTTTTCCCTCGATTCTAAGCTGATGTTAAAGATGTTGATGGCTAAACACGATTCTAGTATAATGGATTCAATTATTATGCTACTTTAGGGAGTTTTGGAGTTATGCTATGGAAGTTATGATACTATGCGTATCTGTTGCTATGTTTGATTGATGGACTCTTGTTCTGAATAACTCAGGAGTTAGGTTCTAAAATATGAATATGTGACTGTGATTATGTTGGAATGATGGTGATTGCAATCATTTTAACGATGTTTTGGTGACCTGTTGAGGATCGCTACTTATGATTATGTTTGGTGACTTGTCAAGGATTTCTACCTACAAGCATGCCTTTGGGTTCGCCCTTATGCCTTTGTTTACAACTATGTCGGTATGCACATAGTTTTATTAGGAATGGTTAACAGGTACATCTAGTGGGTCTAATAATGGGTCACTTGTTGAGTATTCTTATACTTGTCATTTTCAAAGGCAAGAACAAACCAACGAATGTCAAGAAGAATCTGTGATTGAGCCTATTGACGTGGCTTCTGCATACATTTTAAAAATATTTATATTTTAAAAAATTTTACAAGTTTTTTGGTTGTTTAATTATTTATTTTTTAAAATTATTTGAACTTAGATTTAGGGGTACCCTGAACGATGATTTATTGAATTTGTTTTTGAAACTTTACTTATTAAAACAATTTTGTTTCATTTAGTTGATTTTGGCCAGAAATATATTTTTAAGCTTATACATGCATGAAGTAACATCCTTGGCATGTTGGAAATATGGGACGTTACAAATGGCATCATATCCGATTTTCGCCTGATTCAACGACATATTCATTGTGTTTTTCCATTCTGCTGATAGATTTTCTTTCTTTTGTGAAGGTCTTTTTGCTGATGGGTTTTTGTGTTGCTTCTTAGGCATTTACTGAACGAAGGACTGAAACAAACTAATGGCTGATGAAAACTTCATTTCTTCTCAAATCCTGCTGCTTGAAATATAGTACCCAACCTGTACAGACTGGAATTTCATCGAGCTCAATTTTCTTTCTGTAGAAGCTTGTTGGCAGTAATTCAAGCACCTTGCTGCAGATTGTTGTACTTCTGCTCCTATTTTTGGCATTACGGTTGATTCTACAAGGGAGAGAGTCCATAATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAGTATGACCCTCTTGTATACTCTTTATCTTTCTTAGAATCATTGGTTGATTTTTCTCTCTGAATTTGAATACATTTTACTTATTTTCTGAATTCTATGGTGTTAGACCAGTAGAATATGAGTTAAGGCATTAACATCTACTTCTTCTTTCTATGAGGTCTTGCATATTCAAATTTGCATGCCCTCATTGTACTGCAAAAGAGTGAGAGCTCATTGATAATATTATATTACAGAAAGGAAAAACCTCATGAGATGGATTACAAAAGATGTATCCAATTGGAAAGGAAGGAGGAAAGGAATAGCTATAGGGATGGAAGAGGGGAACGTTTACACTAAAAAACTAGATGTTAATTATAACTTATTTTTGCACTGTCTCTCTACTAGGTAAGCTTGGAACACTTTGTTAGAATTTTTTATTTGGAGCTTTGTCTTCGTAGTAAGGTTGATAGTTGGTTGATTGAAGGGCTCAACATTAGAGGTTATAGCTCAAAAGGAAACATCTTATGGAGATGTGCTACTCGGTCCCTTTTGAGGTGCATTTGGAAAGAAAGGAGTGGTAGAATTTTTTAAGATAGCTATAATTCTTTTGATTCTTTTTGGACTGTGTTGTAACACACAACTTCTTGGTGGAGTACAAATTACACCAAACACTTTTGTAATTATATTCAACAACTGGAAGGCGATCATTTTTTGGTTTCTTTTGGGGAGTCTTGTGCCTTGCTCTTAGGTTCTTCTCTTTTGTTATAGGAATATACATGTTTCTTATAAGAAGAAAAATCTGGGATAGTGTAGTTCTTTCTCTTGGAAGATTCAATTGTTTCTTTCTTGTCAATTGATCCATCAGAAGGCTCTTATGAAATCTCTCTTTTAATTTATTGTTTTTTTTCTCTCAGTACCTTTTAGTTGGTGAAGTCTTTTGTAAATCCCCCCAATGGGATCCCATCTTTTATAATTTCACACCGTTGATGAAATCATTTCTTATCCAAAACAAAAAATCACGGCAGGTGAAGGTACCCTAAATAAATTCATTGCACTTCAAATCATGATTTTTTCTTTTCAAGAAGAGAAGATTGTTGCTTCTAAGTTTTGCTGAAGTTATTTGATAGGACTTGGTCAACATTTTTATTTATCCCACGTATCAAGGGAAGTTTTGACTTTGAGAGCATCCTGTCTCTCCCAATTCTCCTCAGAGAACCACAACAAAATCACAGCCAAAAAGATCCCCTATGTAACAACACTCCCCTCTATGACAGCCTCCTCCCTCTACTTGTTACACATTATATTCGATTTTTCTTCTTCACATGCCTGCTCATAGACCATAGTGATTTGGGGCTTATCATTATTGAATTTATTGTTTTTCTGCTCTCCTTCACTTTGTATGAATAGCCACGAGTGCCGATAAAAACAATGTTCATAGATTGCTGGATCACTAACCATAACTGGAATTGGGTATTCATTGATGTAAGTTTGAAATAACGAATTGTCACGACAGCTGTTTAAGGTGAATTTTATCTTCTTTTTTATGCCTCATTTTGATAAATGTTTGCATTTGGATGCGGGGTAAGCATGAGTTTATTGTGCTTCTAGAACTCTTAAACACACTGCTTGATTAGGAAAGATCTAGAATCAAGTGGAGATTTTATTTTAATCAAATAACGTGTTTTTTATGTCCCGCTCCTATATCAATCCTCATGTATGTGGAAGATCTCTCAGGAAGGATGATTAGGGCATCAGGTGGGATTTAGTGTGTAGGTTTGGCTTCCTAAGGCAACCTTCTATTTGACAACCTAGGTTTGATTGGAGAAACTAACCGGCTTGAACAATGGCTTACCATCACAATTTTCAAGCCAAGCTTTCTAGACTTGCTCTTCAAACACAGAACCTGTGGCCCAGATGGTTAGATTTTAAGAAGAGAAAATGAACTTAAGGTTGTGTTACCTTCTAGAGGTTTGTAATTAGCTATTGGTAGTGGAGCTTCAGCATTGGTTTGCAAGCACTCACCGTCAATGTCTTAAAAAACTATCGAGGCTTACACCTTGAGGCGCTTGCCTCAAGGCAAGGCTCTAAGTTTTAGTCTCAAGACATACGCCTTTGTTGAACCATAAGAGGCGTACTCTTCTCACAAATGTGGCTTACGCCTTTGGGAAACAACATGGAAGCTTAAAATCTCTAGCCCCGCCTAGGAAAAATTATAGCAATTTGTCTAATTCTTAAAAAATATTAAGGTTTGAGCTAGGACAATTTGAACTAGGACTATTTTGACATCCTCATCAGCATTAATATTGCTATTATTAGTGATGATGAAGATGTCCTTTTAGAACTTTTTTTATTAAGTGAAAATTATGGAGGTGAAGTTTCTTTTTGCACTTTTATATAACTATCAATGTTTAGTAATACTTGATCATACCAATTTAGGTTTTGTTGTATTTAATTCATTATTTGAGGCTTACGCCTTATACTGCCTTGAGGCATCGCCTCTTGGAGAGGAAAAGCCTCAAGGCCGCCTTTAGCCTTTTAAAACATTGCTCACCGTCCTTCCATTTTTTGAACCAATTATTAGATTATTTCTAAGGTTCGTTTATTCTTTTTCATTATATTCATGAGAAGTTGTTTTCTGTTTAAAAATTCGGTTTTCTTTTGCATGGCTTTATTGGTTTTTGTTGTATTTTTGTAGACTCTTGTGTACATTTCTCGGTTTCTCTCTTATATTCTGATATTTGAGGGTGATATTATAATTTCGTGTACTTCCTTTGTATTGGCTTTATGTTATATAATAAGAGTTTGGTGCCTTTTATTAGTTCTTTTGCTCACAGACATGCATATATACATATGATCGTATCCCCTTCCTCTTGTATTTCTCTTTAATGTTTCTTGTATTTGGACGTTATACTCTTCTCATTGCATCAATAAAAGGTTCCTTTTTTGTTTTTCGAAGAAAAAAAGGAAACCTTCATATTGACATGTGATCTTATACCGTTTCATATTGTCATGCAATCACTTTTTTTTTCCAATTTTGGAGTATTTAGCCTTTATGTGTGCTGGTGCTTATAGATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTTAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAATTGCTTACAGGAGACTTTTTCTTCTTCTCAACTTGAGAGTTCAAGCTTTGACTTTTTATCCTCTCTTTCCAAAGATTTGTTTCTTCATTTTTCACTATAACCTTTTGTAGCTTATATTTGTATTTTGTTTAATATATACAGTTAGAAATGAGAATTGTTTTTGGAAATTGAGATGGGAAATCTTCAAACTTTTTGTTCAATAAGATTAGCCGTAGGCTCTGAGATTTGAAG

mRNA sequence

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTTAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAA

Coding sequence (CDS)

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATACTGAAGAAAGTTGGAGAGAACAATTTGGCACCTGGAGTGAAAGATTCGTTGAAGAAATGTATTCCGGACAGCAAAATAGTGATGGGTAGAGCAAACCGCGGTATTTATGCTGGCCGTCACATACGATTCGGCAATCGTGTCAGTGAAGATGGTGGTAACAAATCAAGGAGGAATTGGAAACCAAACGTCCAAGAGAAGCGACTTTTCAGCTATATTCTAGACCGCCATATTCGAGTTAAAGTTACCACTCATGCCCTTCGATGCATCGACAAGGCTGGTGGGATCGACGAGTACCTGCTGAAAACTCCATACCACAAAATGGACACTGAATTGGGGCTGTTTTGGAAGTCAAAGATTGAGACGCTGTATGAAGAACTTGGGAAGATGGAGGTCGTTTTCTTCTCACCAGAGGACGAAGTTAAATTTGAACAACGCTTTAAAGAACTGAAATTATCTGAGAGGGCAGCACGGAGGGAGGCAAGAAGACAAATGTATGGCAGTTCGGCTAAACTCAATCAGATCAAAGAGGGCGGAGAAAAGGGTAATGGATCTAGTGAGGAAGCTGCTGCAAGTTCTGAAGGAGGTTCCCATGGTGATGATAGTCATCAGCAGTGGGTTGCCAATGTCTAA
BLAST of CSPI03G00990 vs. Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-12
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1

Query: 30  KKCIPDSKI----VMGRANRGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++N+G+Y G  ++FGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTELG-LFWKSKIETL 135
           +R I +K+T   L+ I K GGID YL K    ++  ELG   WK +   L
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTKEKSARI-KELGPTGWKLRYRVL 159

BLAST of CSPI03G00990 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1

Query: 43  ANRGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A +    G+  + GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

BLAST of CSPI03G00990 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1

Query: 50  GRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++  GG+D 
Sbjct: 9   GKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVEHNGGLDA 68

Query: 110 YLLKTPYHKMDTE 123
           +LL TP  K+ TE
Sbjct: 69  FLLSTPNRKLPTE 80

BLAST of CSPI03G00990 vs. Swiss-Prot
Match: RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmB PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.1e-08
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1

Query: 50  GRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ ++ GN VS    NKSRR W PN+QE  L S  L R +R++++T+ +R I+  GG+D 
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGLDA 68

Query: 110 YLLKTPYHKMDTE 123
            LL  P  +++ +
Sbjct: 69  ALLDIPDARLNQD 80

BLAST of CSPI03G00990 vs. Swiss-Prot
Match: RL28_RHORT (50S ribosomal protein L28 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-07
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1

Query: 43  ANRGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           + R    G+ ++ GN VS     KSRR + PN+Q   L S +L   +R++++ H LR ++
Sbjct: 2   SRRCAVTGKGVQTGNNVSHSN-IKSRRRFLPNLQVNSLMSDLLREPVRMRLSAHGLRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTEL 124
             GGID +LL TP  ++  EL
Sbjct: 62  HRGGIDAFLLSTPSVELTVEL 81

BLAST of CSPI03G00990 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 1.0e-118
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 222
           AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 221

BLAST of CSPI03G00990 vs. TrEMBL
Match: A0A059AZQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 3.2e-88
Identity = 169/215 (78.60%), Postives = 187/215 (86.98%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK+LK+VGENNLAPGVK++L+KCIP S+IVMGRA+RGI+AGRHIRFGN+VS
Sbjct: 1   MAFRGKEMMKKVLKRVGENNLAPGVKETLEKCIPKSQIVMGRAHRGIFAGRHIRFGNQVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GL+WKSKIE LYEELGKMEVVFFSPEDE KFEQ FK+LKL ERAARR+ RRQMYG+S
Sbjct: 121 TEMGLYWKSKIEKLYEELGKMEVVFFSPEDETKFEQGFKQLKLEERAARRDFRRQMYGTS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQ 216
            K     EG      + EE+    +G  H DD  Q
Sbjct: 181 GKEKLAGEGQASDQATQEESPRIGDGHWHADDHDQ 215

BLAST of CSPI03G00990 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 4.3e-85
Identity = 164/206 (79.61%), Postives = 182/206 (88.35%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSK+VM RA RG+YAGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+MEVVFFSPEDE KFEQ FKELKL+ERAARR+ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEG 207
            KL +I E     +G+      SS+G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

BLAST of CSPI03G00990 vs. TrEMBL
Match: E0CQ81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14510 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.4e-83
Identity = 166/220 (75.45%), Postives = 191/220 (86.82%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFR +EMMKKI+KK+G+N L    ++SLKK +PDSK+VMGRA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRSREMMKKIVKKMGDNKL----EESLKKYVPDSKVVMGRAKRGIYAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+M+VVFFSPEDEVKFEQ FKELKL+ERAARREARR +YG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGEMDVVFFSPEDEVKFEQGFKELKLAERAARREARRHIYGGS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 221
            K  Q++EGG     ++E AA   EG SH  D+ ++ VAN
Sbjct: 181 GKQVQLEEGGADIQETNEVAARVLEGSSH-VDAPERLVAN 215

BLAST of CSPI03G00990 vs. TrEMBL
Match: A0A068VCA3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00009057001 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.8e-83
Identity = 161/221 (72.85%), Postives = 189/221 (85.52%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRV 60
           M+FR +EM+K+I+KK+G E NLAPG+KD LKK +P+SK+VMGRA RG+YAGRHI+FGN+V
Sbjct: 1   MSFRSREMVKRIVKKIGGEKNLAPGLKDELKKSVPNSKVVMGRAQRGLYAGRHIQFGNQV 60

Query: 61  SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           S DGGNKSRR+WKPNVQ+KRLFSYILDRHI+VKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SHDGGNKSRRSWKPNVQDKRLFSYILDRHIKVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGS 180
           DTE+GL+WK+KIE LYEELG+MEVVFFSPEDE KFE++F+ELKL +RAARREARR+MYG 
Sbjct: 121 DTEMGLYWKAKIEKLYEELGEMEVVFFSPEDEAKFEEQFRELKLEQRAARREARRKMYGW 180

Query: 181 SAKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 221
           S K   I EG     G+ +EAA   EG S   D H+  VAN
Sbjct: 181 SGKSEAIDEGRADAEGTHQEAARHGEGSSDA-DIHEPQVAN 220

BLAST of CSPI03G00990 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family)

HSP 1 Score: 282.7 bits (722), Expect = 1.9e-76
Identity = 143/216 (66.20%), Postives = 171/216 (79.17%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+K+VMGRA RG+YAGRHI++GNRVS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GL+WK+K+E  Y ELG+MEV FF+PEDE K EQ FK+L ++++ ARREARR      
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTF---- 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQ 217
                     +KG G+  +  AS EGG  G +SHQ+
Sbjct: 181 ---------RKKGGGNKGDEEASIEGGG-GSESHQE 202

BLAST of CSPI03G00990 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 434.1 bits (1115), Expect = 1.5e-118
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 222
           AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVANV 221

BLAST of CSPI03G00990 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo])

HSP 1 Score: 388.7 bits (997), Expect = 7.1e-105
Identity = 205/223 (91.93%), Postives = 212/223 (95.07%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVK+SLKK +PDSKIVMGRANRGIYAGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TELGLFWK+KIETLYEELGKMEVVFFSPEDE KFEQRFK+LKLSERAAR+EARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 A-KLNQIKEGGEKGNGSSEEAAASSEGGSHG-DDSHQQWVANV 222
             KLNQIKEGGE  N SSEE AASSEGGSHG DDSHQQWVANV
Sbjct: 181 TNKLNQIKEGGEDTNVSSEE-AASSEGGSHGDDDSHQQWVANV 222

BLAST of CSPI03G00990 vs. NCBI nr
Match: gi|702438258|ref|XP_010070462.1| (PREDICTED: uncharacterized protein LOC104457224 [Eucalyptus grandis])

HSP 1 Score: 332.8 bits (852), Expect = 4.6e-88
Identity = 169/215 (78.60%), Postives = 187/215 (86.98%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMKK+LK+VGENNLAPGVK++L+KCIP S+IVMGRA+RGI+AGRHIRFGN+VS
Sbjct: 1   MAFRGKEMMKKVLKRVGENNLAPGVKETLEKCIPKSQIVMGRAHRGIFAGRHIRFGNQVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GL+WKSKIE LYEELGKMEVVFFSPEDE KFEQ FK+LKL ERAARR+ RRQMYG+S
Sbjct: 121 TEMGLYWKSKIEKLYEELGKMEVVFFSPEDETKFEQGFKQLKLEERAARRDFRRQMYGTS 180

Query: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQ 216
            K     EG      + EE+    +G  H DD  Q
Sbjct: 181 GKEKLAGEGQASDQATQEESPRIGDGHWHADDHDQ 215

BLAST of CSPI03G00990 vs. NCBI nr
Match: gi|1009136027|ref|XP_015885311.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 163/200 (81.50%), Postives = 182/200 (91.00%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60
           MAFRGKEMMK I+KKVGE N+APGVK+SLKKCIPDSKIVM RA RGI+AGRHIRFGNRVS
Sbjct: 1   MAFRGKEMMKNIMKKVGEKNMAPGVKESLKKCIPDSKIVMNRAKRGIFAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYSKMD 120

Query: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180
           TE+GLFWK+KIE LYEELG+ EVVFFSPEDE KFEQ FKEL+L+E+AA++EAR+QM+G S
Sbjct: 121 TEMGLFWKAKIEKLYEELGQKEVVFFSPEDETKFEQEFKELRLNEKAAQKEARKQMFGWS 180

Query: 181 AKLNQIKEGGEKGNGSSEEA 201
            KL Q++EG  K   + EEA
Sbjct: 181 GKLKQMEEGEAKNEETKEEA 200

BLAST of CSPI03G00990 vs. NCBI nr
Match: gi|747070067|ref|XP_011081840.1| (PREDICTED: uncharacterized protein LOC105164778 [Sesamum indicum])

HSP 1 Score: 324.7 bits (831), Expect = 1.3e-85
Identity = 167/221 (75.57%), Postives = 191/221 (86.43%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRV 60
           MAFR +EMMKKILKKVG E NLAPGVK+ LKK +PDSK+VMGRA+RG+YAGRHI+FGNRV
Sbjct: 1   MAFRSREMMKKILKKVGGEQNLAPGVKEQLKKSVPDSKVVMGRAHRGLYAGRHIQFGNRV 60

Query: 61  SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR WKPNVQEKRLFSYILDRHIRVKV+THALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRTWKPNVQEKRLFSYILDRHIRVKVSTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGS 180
           DTE+GLFWK+KIE +Y++LG+MEVVFFSPEDE  FE++FKELKL  +AARREARR+MYGS
Sbjct: 121 DTEMGLFWKTKIEKMYQDLGEMEVVFFSPEDEANFEEQFKELKLEMKAARREARRKMYGS 180

Query: 181 SAKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 221
           +A    IK+G + G  S  E A+ SE GS   D H+  VAN
Sbjct: 181 TATQESIKDGEDVGEAS--EGASRSEDGSSHADLHEPMVAN 219

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RM24_YEAST3.1e-1239.0954S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC... [more]
RL28_MAGMM3.3e-0943.6650S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1... [more]
RL28_GLUDA5.6e-0942.4750S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037... [more]
RL28_RHOCS6.1e-0839.7350S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN... [more]
RL28_RHORT1.8e-0737.0450S ribosomal protein L28 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.... [more]
Match NameE-valueIdentityDescription
A0A0A0L1P8_CUCSA1.0e-118100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1[more]
A0A059AZQ3_EUCGR3.2e-8878.60Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1[more]
A0A0D2PMQ4_GOSRA4.3e-8579.61Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1[more]
E0CQ81_VITVI1.4e-8375.45Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14510 PE=3 SV=... [more]
A0A068VCA3_COFCA1.8e-8372.85Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00009057001 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G31460.11.9e-7666.20 Ribosomal L28 family[more]
Match NameE-valueIdentityDescription
gi|449456779|ref|XP_004146126.1|1.5e-118100.00PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus][more]
gi|659095444|ref|XP_008448584.1|7.1e-10591.93PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo][more]
gi|702438258|ref|XP_010070462.1|4.6e-8878.60PREDICTED: uncharacterized protein LOC104457224 [Eucalyptus grandis][more]
gi|1009136027|ref|XP_015885311.1|1.5e-8681.50PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba][more]
gi|747070067|ref|XP_011081840.1|1.3e-8575.57PREDICTED: uncharacterized protein LOC105164778 [Sesamum indicum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001383Ribosomal_L28
IPR026569Ribo_L28/L24
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006457 protein folding
biological_process GO:0006950 response to stress
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G00990.1CSPI03G00990.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001383Ribosomal protein L28HAMAPMF_00373Ribosomal_L28coord: 40..110
score: 14
IPR026569Ribosomal protein L28/L24PANTHERPTHR1352839S RIBOSOMAL PROTEIN L28, MITOCHONDRIALcoord: 23..177
score: 1.9
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 48..103
score: 1.8
NoneNo IPR availableGENE3DG3DSA:2.30.170.40coord: 44..118
score: 2.1
NoneNo IPR availableunknownSSF143800L28p-likecoord: 43..119
score: 2.55