Lsi07G002610 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G002610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Peptidyl-prolyl cis-trans isomerase 1
Location	chr07 : 2846342 .. 2848828 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGATTGGATCACTAGCTGTACTGAACCGCAGGGGAAAAGTCTCTCCAATTTTCGGGTAAGTGTCTATTATTATATATATGTTCCACTTCTCTTTATCGTGCCCACCATTGTCAAGAGCTCGCAACTATCTCCACCAATACAAGTGAAGGAAAGAGCGAGGGCGGCGCCACCGTTACCCATCACCGGCTGCCAAAATAGATTCCGATCGCAAGCGGAAGAAATCGGCTTATTCGATCTCCTCTGCGGATCGAACTGCGAAGGAAAAGCGTAGCAGCAGCAAGAAAAACAAGATGTCCTCTTCGGCGACCACCGGTCAGGTTAGGGCATCGCACATACTCATAAAGCACCAAGGTTCGCGACGTCCTGCTTCGTGGAAGGATCCGGAAGGTAGAATTATCAAGAATACCACTCGTGATAGCGCCGTCTCTCAGCTTACTGTCATTCGAGACGACATCATTTCTGGCAAGTCCAAGTTTGAAGACATTGCCTCTCGCATCTCTGACTGCAGCTCTGCCAAGCGTGGCGGCGATCTAGGTCCGCTCACTAACCTCCTTTTTTTGGCTCTTTTCTTAATTTTTCTGATCGCTACGTACTTATTTCCTTTTATTCGCCATTTCTTGTCTGATTGGTGTAATTTGCAGTCCGGAATTTGGTAGTTTTCACTTTATCATGCATCGACCCTTGAACCCTAGACTTAACTGTGAGAAATCTTAGGCCCCGTTTGATCAAGTTTTTAGTTTTCTGTTTTAGTTTGCTCACAATTTATTTACCATGGTTTTTCTCTTTCTGATGGAAAGATTTGAATTCGTAGCCAAATTCCAAATTCCAAAAACAAAAATAAAAACATACTGCATTTGGTTTTGAGAACATTTGTAAAAAGTATAATTGAACACAAAAAAAACCTTTTGTGGAAGTTGTGTTTAAGTTTTAATTTTCGAAAACCAATAACTAAAGCCCAAATGATTATCAAAGGGCCGTAGTCTTTGGATTTCGGTTTGTTGAAGATTTAAGACTTAGGTTTCAAATAGTTGAATATTATTTCTAAACAGGATATCTGAATCTCGGTTGGATTTTACTGGATATATGTGTCTATATTTACGTATTTGCTTCATTTAAGGTTTGGAATTCATCTCGTTTTGGTTTGACAGAATAACCTTGAGTATGATTATATCCTGCCACTCTCTTATTTGCTTCGTTTTTGTTGAATTGTTATGTCTACGAGTGAGGAACTGTGTTATATCTCAGTTTCTAAGTTGAATTTTTTACTTACTTTCTGAAAAACCTATTATGACCCATTGATGCTCAAAGAATTAGCACAAGATTGTGAAAGATTTGGTTATCTTCTTACTTTTAGAATCTGGAAGTTGGTCGATACTGTGATGAATATTGTGTGGACCATTTTACTTTTAAACCTATGAAAGGATTACTTAATCAGTACTTGATTTTATCTAAATAGGTTCTCTTTATGTGATGTCAATTGGTTAAACCAACCATTCAATCGGAAAATCCATCTACAGATTTTCTCTTATATTTGGTAAAAAGCAAGAACGTCAACACTTTGAAACTCTCTATATTTGGAATTTTTTTTCCTGTTGCTGTGAATTAATATTTGGTCCAGCAAATGCTTAAGATTCTAGAATGCTATGAGATCTATGAACTTAAATGAAAGCTTTGGAAATCAAAGGGAGAGGTTCGGGAAGTAGCAGTAATTATACTTGTTACTAGTTCCATTACAAATTGGTACCCCCAACAAACACACACACACACACAAACAAGAACTTCCCTTTTTGTTAAATTTGGTTCTATATAGTCTTACAGTCCCTTTTTTTCTTATACTTGATCTTTCAATTAAGAGAAAAATTTGGAATTTTATGTACTCAGTCTTGCGAGCCCAGTTGATAAACTCCCAAAGAGTATTTATGTTTGGCAGTTCAATAGCATGTTTTTCGACAACTTCTAGGATCAGAAGGATATGTGGTGATGTTTTATTCGTTAGTAGCTGATATTTTTATCCTAGCAATTGTGTTTGTAGGGATTAGCATAATATAGAAGGCGTCTAAATGAGCAACACAATATAATGTTATTGCAGGTCCTTTTGGGCGTGGCCAAATGCAGAAGCCTTTTGAAGAAGCAACATTTGCCCTCAAGGTTGGAGAGGTAAGCGACATTGTGGATACTGACAGTGGAGTTCACATCATCAAGCGCACTGCTTAACTTCTCTCATAAATCTCATCGCTCTATTTATGAAGCATTTAATCCATTTGAAGTTGTTCATGTAGGATTTGTTTCTGCGTCCAAGGCCACACGAATTTCTTACTATAATACTCTCTTGATAATTCATGTTGTGATTTGCCTATAGCTACTCTGTTTCAGTGACACTAAGATTTTTCTGAAAGTTCGATGCTTTTATGCCATTGAATTTTTGCCTTTGTAAACTTGACAACATTAACATTCAACTGGTTGTGGTTTGAGTTCTTCTGGTCTA

mRNA sequence

AGAGATTGGATCACTAGCTGTACTGAACCGCAGGGGAAAAGTCTCTCCAATTTTCGGGTAAGTGTCTATTATTATATATATGTTCCACTTCTCTTTATCGTGCCCACCATTGTCAAGAGCTCGCAACTATCTCCACCAATACAAGTGAAGGAAAGAGCGAGGGCGGCGCCACCGTTACCCATCACCGGCTGCCAAAATAGATTCCGATCGCAAGCGGAAGAAATCGGCTTATTCGATCTCCTCTGCGGATCGAACTGCGAAGGAAAAGCGTAGCAGCAGCAAGAAAAACAAGATGTCCTCTTCGGCGACCACCGGTCAGGTTAGGGCATCGCACATACTCATAAAGCACCAAGGTTCGCGACGTCCTGCTTCGTGGAAGGATCCGGAAGGTAGAATTATCAAGAATACCACTCGTGATAGCGCCGTCTCTCAGCTTACTGTCATTCGAGACGACATCATTTCTGGCAAGTCCAAGTTTGAAGACATTGCCTCTCGCATCTCTGACTGCAGCTCTGCCAAGCGTGGCGGCGATCTAGGTCCTTTTGGGCGTGGCCAAATGCAGAAGCCTTTTGAAGAAGCAACATTTGCCCTCAAGGTTGGAGAGGTAAGCGACATTGTGGATACTGACAGTGGAGTTCACATCATCAAGCGCACTGCTTAACTTCTCTCATAAATCTCATCGCTCTATTTATGAAGCATTTAATCCATTTGAAGTTGTTCATGTAGGATTTGTTTCTGCGTCCAAGGCCACACGAATTTCTTACTATAATACTCTCTTGATAATTCATGTTGTGATTTGCCTATAGCTACTCTGTTTCAGTGACACTAAGATTTTTCTGAAAGTTCGATGCTTTTATGCCATTGAATTTTTGCCTTTGTAAACTTGACAACATTAACATTCAACTGGTTGTGGTTTGAGTTCTTCTGGTCTA

Coding sequence (CDS)

ATGTCCTCTTCGGCGACCACCGGTCAGGTTAGGGCATCGCACATACTCATAAAGCACCAAGGTTCGCGACGTCCTGCTTCGTGGAAGGATCCGGAAGGTAGAATTATCAAGAATACCACTCGTGATAGCGCCGTCTCTCAGCTTACTGTCATTCGAGACGACATCATTTCTGGCAAGTCCAAGTTTGAAGACATTGCCTCTCGCATCTCTGACTGCAGCTCTGCCAAGCGTGGCGGCGATCTAGGTCCTTTTGGGCGTGGCCAAATGCAGAAGCCTTTTGAAGAAGCAACATTTGCCCTCAAGGTTGGAGAGGTAAGCGACATTGTGGATACTGACAGTGGAGTTCACATCATCAAGCGCACTGCTTAA

Protein sequence

MSSSATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKSKFEDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRTA

Homology

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BLAST of Lsi07G002610 vs. Swiss-Prot
Match: PIN1_MALDO (Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.2e-52
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 1


Query: 3   SSATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKSKF 62
           SS+   QVRASHILIKHQGSRR ASWKDPEG+II+NTTRDSAVSQL  +RDDI+SGK+KF
Sbjct: 2   SSSAGNQVRASHILIKHQGSRRKASWKDPEGQIIRNTTRDSAVSQLKALRDDILSGKAKF 61

Query: 63  EDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRT 122
           +D+A+R SDCSSAKRGGDLGPFGR QMQKPFEEATFALKVGE+SDIVDTDSGVHIIKRT
Sbjct: 62  DDLAARYSDCSSAKRGGDLGPFGRNQMQKPFEEATFALKVGEMSDIVDTDSGVHIIKRT 120

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BLAST of Lsi07G002610 vs. Swiss-Prot
Match: PIN1_ARATH (Peptidyl-prolyl cis-trans isomerase Pin1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-48
Identity = 93/118 (78.81%), Postives = 108/118 (91.53%), Query Frame = 1


Query: 5   ATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKSKFED 64
           A+  QV+ASHILIKHQGSRR ASWKDPEG+II  TTR++AV QL  IR+DI+SGK+ FE+
Sbjct: 2   ASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEE 61

Query: 65  IASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRTA 123
           +A+R+SDCSSAKRGGDLG FGRGQMQKPFEEAT+ALKVG++SDIVDTDSGVHIIKRTA
Sbjct: 62  VATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119

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BLAST of Lsi07G002610 vs. Swiss-Prot
Match: PIN1_DIGLA (Peptidyl-prolyl cis-trans isomerase Pin1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-44
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = 1


Query: 9   QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKSKFEDIASR 68
           +VRASHILIKHQGSRR +SWKDP+G +I  TTRD AVSQL  +R +++S  + F D+ASR
Sbjct: 5   KVRASHILIKHQGSRRKSSWKDPDGSLISATTRDDAVSQLQSLRQELLSDPASFSDLASR 64

Query: 69  ISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRT 122
            S CSSAKRGGDLGPFGRGQMQKPFEEATFALKVGE+SDIVDTDSGVHIIKRT
Sbjct: 65  HSHCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKRT 117

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BLAST of Lsi07G002610 vs. Swiss-Prot
Match: PIN1_RHIO9 (Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=pin1 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.7e-26
Identity = 64/114 (56.14%), Postives = 82/114 (71.93%), Query Frame = 1


Query: 9   QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKSKFEDIASR 68
           +VRASH+LIK + SRRP+SW++         +++ A+  LT  +  I SG+     +A+ 
Sbjct: 41  RVRASHLLIKSRESRRPSSWREEH----ITRSKEEALKILTDFQHKIESGQETLSALATN 100

Query: 69  ISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRTA 123
            SDC+SAKRGGDLG F RGQMQKPFEEATFAL+VGE+S  V TDSGVH+I RTA
Sbjct: 101 YSDCTSAKRGGDLGYFERGQMQKPFEEATFALQVGELSKPVWTDSGVHLILRTA 150

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BLAST of Lsi07G002610 vs. Swiss-Prot
Match: PIN1_MOUSE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Mus musculus GN=Pin1 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-26
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 1


Query: 9   QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKSKFEDIASR 68
           +VR SH+L+KH  SRRP+SW+  +       +++ A+  +      I SG+  FE +AS+
Sbjct: 56  KVRCSHLLVKHSQSRRPSSWRQEK----ITRSKEEALELINGYIQKIKSGEEDFESLASQ 115

Query: 69  ISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRT 122
            SDCSSAK  GDLGPF RGQMQKPFE+A+FAL+ GE+S  V TDSG+HII RT
Sbjct: 116 FSDCSSAKARGDLGPFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 164

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BLAST of Lsi07G002610 vs. TrEMBL
Match: A0A0A0KZK7_CUCSA (Peptidylprolyl isomerase OS=Cucumis sativus GN=Csa_4G046790 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 8.0e-57
Identity = 113/122 (92.62%), Postives = 120/122 (98.36%), Query Frame = 1


Query: 1   MSSSATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKS 60
           MSSSA T QVRASHILIKHQGSRRPASWKDPEGRIIKNTTR+SAVSQLTVIR+DIISGK+
Sbjct: 1   MSSSAATAQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIRNDIISGKA 60

Query: 61  KFEDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 120
           KFEDIA+RISDCSSAKRGGDLGPFGRGQMQKPFEEAT+ALKVGE+SDI+DTDSGVHIIKR
Sbjct: 61  KFEDIATRISDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIIDTDSGVHIIKR 120

Query: 121 TA 123
           TA
Sbjct: 121 TA 122

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BLAST of Lsi07G002610 vs. TrEMBL
Match: A7DX09_LOTJA (Peptidylprolyl isomerase OS=Lotus japonicus GN=pin1 PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-52
Identity = 102/121 (84.30%), Postives = 118/121 (97.52%), Query Frame = 1


Query: 1   MSSSATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKS 60
           MSSS+++G+VRASHILIKHQGSRR ASWKDPEGR+IKNTTR+SAV+QL+ +R+DI+SGK+
Sbjct: 1   MSSSSSSGEVRASHILIKHQGSRRKASWKDPEGRVIKNTTRESAVAQLSTLREDILSGKA 60

Query: 61  KFEDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 120
            FED+ASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVG++S+IVDTDSGVHIIKR
Sbjct: 61  NFEDVASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGDISEIVDTDSGVHIIKR 120

Query: 121 T 122
           T
Sbjct: 121 T 121

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BLAST of Lsi07G002610 vs. TrEMBL
Match: A0A0S3R4J9_PHAAN (Peptidylprolyl isomerase OS=Vigna angularis var. angularis GN=Vigan.01G326000 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 8.5e-51
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 1


Query: 1   MSSSATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKS 60
           MSSS   G++RASHILIKH+GSRR ASWKDPEGRIIKNTTR++AVSQL  +RDDI+SGK+
Sbjct: 1   MSSSKVGGEIRASHILIKHEGSRRKASWKDPEGRIIKNTTREAAVSQLKALRDDIVSGKA 60

Query: 61  KFEDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 120
            FED+ASR SDC SAKRGGDLGPFGRGQMQKPFEEAT ALKVGE+SDIVDTDSGVHIIKR
Sbjct: 61  TFEDVASRFSDCGSAKRGGDLGPFGRGQMQKPFEEATLALKVGELSDIVDTDSGVHIIKR 120

Query: 121 T 122
           T
Sbjct: 121 T 121

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BLAST of Lsi07G002610 vs. TrEMBL
Match: A0A0L9TNV5_PHAAN (Peptidylprolyl isomerase OS=Phaseolus angularis GN=LR48_Vigan01g179100 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 8.5e-51
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 1


Query: 1   MSSSATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKS 60
           MSSS   G++RASHILIKH+GSRR ASWKDPEGRIIKNTTR++AVSQL  +RDDI+SGK+
Sbjct: 1   MSSSKVGGEIRASHILIKHEGSRRKASWKDPEGRIIKNTTREAAVSQLKALRDDIVSGKA 60

Query: 61  KFEDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 120
            FED+ASR SDC SAKRGGDLGPFGRGQMQKPFEEAT ALKVGE+SDIVDTDSGVHIIKR
Sbjct: 61  TFEDVASRFSDCGSAKRGGDLGPFGRGQMQKPFEEATLALKVGELSDIVDTDSGVHIIKR 120

Query: 121 T 122
           T
Sbjct: 121 T 121

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BLAST of Lsi07G002610 vs. TrEMBL
Match: I1MN74_SOYBN (Peptidylprolyl isomerase OS=Glycine max GN=GLYMA_16G129900 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-50
Identity = 104/125 (83.20%), Postives = 115/125 (92.00%), Query Frame = 1


Query: 1   MSSSATTG----QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDII 60
           MSSS++ G    +VRASHILIKH+GSRR ASWKDPEGRIIK+TTR++AVSQL  +RDDI+
Sbjct: 1   MSSSSSKGGGGIEVRASHILIKHEGSRRKASWKDPEGRIIKSTTRENAVSQLKALRDDIV 60

Query: 61  SGKSKFEDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVH 120
           SGK+ FEDIASR SDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGE+SDIVDTDSGVH
Sbjct: 61  SGKASFEDIASRFSDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVH 120

Query: 121 IIKRT 122
           IIKRT
Sbjct: 121 IIKRT 125

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BLAST of Lsi07G002610 vs. TAIR10
Match: AT2G18040.1 (AT2G18040.1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1)

HSP 1 Score: 193.7 bits (491), Expect = 6.5e-50
Identity = 93/118 (78.81%), Postives = 108/118 (91.53%), Query Frame = 1


Query: 5   ATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKSKFED 64
           A+  QV+ASHILIKHQGSRR ASWKDPEG+II  TTR++AV QL  IR+DI+SGK+ FE+
Sbjct: 2   ASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEE 61

Query: 65  IASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRTA 123
           +A+R+SDCSSAKRGGDLG FGRGQMQKPFEEAT+ALKVG++SDIVDTDSGVHIIKRTA
Sbjct: 62  VATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119

[Close]

BLAST of Lsi07G002610 vs. TAIR10
Match: AT1G26550.1 (AT1G26550.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.0e-07
Identity = 37/113 (32.74%), Postives = 50/113 (44.25%), Query Frame = 1


Query: 6   TTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKSKFEDI 65
           T   V+A H+L + QG    A  K  +G +        A                +F  I
Sbjct: 39  TCTYVKARHVLCEKQGKINEAYKKLQDGWLSNGDKVPPA----------------EFAKI 98

Query: 66  ASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHII 119
           A+  S+C S K+GGDLG F RG+M  PF++  F   VG  S    +  G HII
Sbjct: 99  AAEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFNTPVGVTSAPFKSTHGYHII 135

[Close]

BLAST of Lsi07G002610 vs. NCBI nr
Match: gi|659102324|ref|XP_008452069.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 2.7e-58
Identity = 117/122 (95.90%), Postives = 121/122 (99.18%), Query Frame = 1


Query: 1   MSSSATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKS 60
           MSSSA TGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTR+SAVSQLTVIRDDIISGK+
Sbjct: 1   MSSSAPTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIRDDIISGKA 60

Query: 61  KFEDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 120
           KFEDIA+RISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGE+SDIVDTDSGVHIIKR
Sbjct: 61  KFEDIATRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKR 120

Query: 121 TA 123
           TA
Sbjct: 121 TA 122

[Close]

BLAST of Lsi07G002610 vs. NCBI nr
Match: gi|449457542|ref|XP_004146507.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 113/122 (92.62%), Postives = 120/122 (98.36%), Query Frame = 1


Query: 1   MSSSATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKS 60
           MSSSA T QVRASHILIKHQGSRRPASWKDPEGRIIKNTTR+SAVSQLTVIR+DIISGK+
Sbjct: 1   MSSSAATAQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIRNDIISGKA 60

Query: 61  KFEDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 120
           KFEDIA+RISDCSSAKRGGDLGPFGRGQMQKPFEEAT+ALKVGE+SDI+DTDSGVHIIKR
Sbjct: 61  KFEDIATRISDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIIDTDSGVHIIKR 120

Query: 121 TA 123
           TA
Sbjct: 121 TA 122

[Close]

BLAST of Lsi07G002610 vs. NCBI nr
Match: gi|152955221|emb|CAM59671.1| (parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus])

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 102/121 (84.30%), Postives = 118/121 (97.52%), Query Frame = 1


Query: 1   MSSSATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKS 60
           MSSS+++G+VRASHILIKHQGSRR ASWKDPEGR+IKNTTR+SAV+QL+ +R+DI+SGK+
Sbjct: 1   MSSSSSSGEVRASHILIKHQGSRRKASWKDPEGRVIKNTTRESAVAQLSTLREDILSGKA 60

Query: 61  KFEDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 120
            FED+ASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVG++S+IVDTDSGVHIIKR
Sbjct: 61  NFEDVASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGDISEIVDTDSGVHIIKR 120

Query: 121 T 122
           T
Sbjct: 121 T 121

[Close]

BLAST of Lsi07G002610 vs. NCBI nr
Match: gi|743839408|ref|XP_011025935.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Populus euphratica])

HSP 1 Score: 211.5 bits (537), Expect = 8.5e-52
Identity = 103/121 (85.12%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MSSSATTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKS 60
           M+SSA+  QVRASHILIKH+GSRR ASWKDPEGR+IKNTTRDSA+SQL  IR+DI+SGK+
Sbjct: 1   MASSASGTQVRASHILIKHEGSRRKASWKDPEGRVIKNTTRDSAISQLKAIREDIVSGKA 60

Query: 61  KFEDIASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 120
           KFED+ASRISDCSSAKRGGDLGPFGRGQMQKPFEE TF+LKVGE+SDIVDTDSGVHII R
Sbjct: 61  KFEDVASRISDCSSAKRGGDLGPFGRGQMQKPFEETTFSLKVGEISDIVDTDSGVHIILR 120

Query: 121 T 122
           T
Sbjct: 121 T 121

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BLAST of Lsi07G002610 vs. NCBI nr
Match: gi|1012128275|ref|XP_015964250.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1-like [Arachis duranensis])

HSP 1 Score: 208.0 bits (528), Expect = 9.4e-51
Identity = 100/114 (87.72%), Postives = 108/114 (94.74%), Query Frame = 1


Query: 8   GQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRDSAVSQLTVIRDDIISGKSKFEDIAS 67
           G+VRASHIL+KHQGSRR ASWKDPEG++IKNTTRDSAVSQL   RDDI+SGK+KFEDIAS
Sbjct: 13  GEVRASHILVKHQGSRRKASWKDPEGQVIKNTTRDSAVSQLKAFRDDIVSGKAKFEDIAS 72

Query: 68  RISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRT 122
           R SDCSSAKRGGDLGPFGRGQMQKPFEEAT+ALKVGE+SDIVDTDSGVHII RT
Sbjct: 73  RFSDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIVDTDSGVHIIMRT 126

The following BLAST results are available for this feature:

BLAST of Lsi07G002610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PIN1_MALDO	2.2e-52	84.87	Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1	[more]
PIN1_ARATH	1.1e-48	78.81	Peptidyl-prolyl cis-trans isomerase Pin1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV...	[more]
PIN1_DIGLA	1.0e-44	77.88	Peptidyl-prolyl cis-trans isomerase Pin1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV...	[more]
PIN1_RHIO9	4.7e-26	56.14	Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizopus delemar (strain RA 99-880 /...	[more]
PIN1_MOUSE	6.1e-26	53.10	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Mus musculus GN=Pin1 P...	[more]

BLAST of Lsi07G002610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZK7_CUCSA	8.0e-57	92.62	Peptidylprolyl isomerase OS=Cucumis sativus GN=Csa_4G046790 PE=4 SV=1	[more]
A7DX09_LOTJA	1.2e-52	84.30	Peptidylprolyl isomerase OS=Lotus japonicus GN=pin1 PE=2 SV=1	[more]
A0A0S3R4J9_PHAAN	8.5e-51	83.47	Peptidylprolyl isomerase OS=Vigna angularis var. angularis GN=Vigan.01G326000 PE...	[more]
A0A0L9TNV5_PHAAN	8.5e-51	83.47	Peptidylprolyl isomerase OS=Phaseolus angularis GN=LR48_Vigan01g179100 PE=4 SV=1	[more]
I1MN74_SOYBN	1.1e-50	83.20	Peptidylprolyl isomerase OS=Glycine max GN=GLYMA_16G129900 PE=4 SV=1	[more]

BLAST of Lsi07G002610 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18040.1	6.5e-50	78.81	peptidylprolyl cis/trans isomerase, NIMA-interacting 1	[more]
AT1G26550.1	1.0e-07	32.74	FKBP-like peptidyl-prolyl cis-trans isomerase family protein	[more]

BLAST of Lsi07G002610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102324\|ref\|XP_008452069.1\|	2.7e-58	95.90	PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Cucumis melo]	[more]
gi\|449457542\|ref\|XP_004146507.1\|	1.1e-56	92.62	PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Cucumis sativus]	[more]
gi\|152955221\|emb\|CAM59671.1\|	1.7e-52	84.30	parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus]	[more]
gi\|743839408\|ref\|XP_011025935.1\|	8.5e-52	85.12	PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Populus euphratica]	[more]
gi\|1012128275\|ref\|XP_015964250.1\|	9.4e-51	87.72	PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1-like [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016853	isomerase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR000297	PPIase_PpiC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0006833	water transport
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0009651	response to salt stress
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0009853	photorespiration
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0016853	isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G002610.1	Lsi07G002610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000297	Peptidyl-prolyl cis-trans isomerase, PpiC-type	PFAM	PF00639	Rotamase	coord: 14..121 score: 1.2
IPR000297	Peptidyl-prolyl cis-trans isomerase, PpiC-type	PROFILE	PS50198	PPIC_PPIASE_2	coord: 7..122 score: 28
None	No IPR available	GENE3D	G3DSA:3.10.50.40		coord: 9..121 score: 8.1
None	No IPR available	PANTHER	PTHR10657	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 9..121 score: 9.1
None	No IPR available	PANTHER	PTHR10657:SF4	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1	coord: 9..121 score: 9.1
None	No IPR available	unknown	SSF54534	FKBP-like	coord: 7..121 score: 2.94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G002610	Csa4G046790	Cucumber (Chinese Long) v2	culsiB303
Lsi07G002610	CSPI04G05560	Wild cucumber (PI 183967)	cpilsiB303
Lsi07G002610	Cucsa.106590	Cucumber (Gy14) v1	cgylsiB140
Lsi07G002610	CmaCh04G007520	Cucurbita maxima (Rimu)	cmalsiB698
Lsi07G002610	CmaCh16G006120	Cucurbita maxima (Rimu)	cmalsiB326
Lsi07G002610	CmoCh04G008010	Cucurbita moschata (Rifu)	cmolsiB692
Lsi07G002610	CmoCh16G006680	Cucurbita moschata (Rifu)	cmolsiB315
Lsi07G002610	Cla014591	Watermelon (97103) v1	lsiwmB439
Lsi07G002610	ClCG07G008440	Watermelon (Charleston Gray)	lsiwcgB413
Lsi07G002610	MELO3C016378.2	Melon (DHL92) v3.6.1	lsimedB471
Lsi07G002610	Cla97C07G135510	Watermelon (97103) v2	lsiwmbB412
Lsi07G002610	Bhi01G001840	Wax gourd	lsiwgoB550
Lsi07G002610	Cp4.1LG01g06740	Cucurbita pepo (Zucchini)	cpelsiB373
Lsi07G002610	Cp4.1LG14g01860	Cucurbita pepo (Zucchini)	cpelsiB185
Lsi07G002610	CsGy4G005440	Cucumber (Gy14) v2	cgyblsiB277
Lsi07G002610	Carg14150	Silver-seed gourd	carlsiB859
Lsi07G002610	Carg05735	Silver-seed gourd	carlsiB935
Lsi07G002610	CsaV3_4G005720	Cucumber (Chinese Long) v3	cuclsiB322

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G002610	Watermelon (97103) v2	lsiwmbB393
Lsi07G002610	Wax gourd	lsiwgoB555
Lsi07G002610	Bottle gourd (USVL1VR-Ls)	lsilsiB082
Lsi07G002610	Cucumber (Gy14) v1	cgylsiB444
Lsi07G002610	Cucumber (Gy14) v1	cgylsiB557
Lsi07G002610	Cucurbita maxima (Rimu)	cmalsiB329
Lsi07G002610	Cucurbita maxima (Rimu)	cmalsiB618
Lsi07G002610	Cucurbita moschata (Rifu)	cmolsiB606
Lsi07G002610	Wild cucumber (PI 183967)	cpilsiB305
Lsi07G002610	Wild cucumber (PI 183967)	cpilsiB477
Lsi07G002610	Cucumber (Chinese Long) v2	culsiB305
Lsi07G002610	Cucumber (Chinese Long) v2	culsiB469
Lsi07G002610	Melon (DHL92) v3.5.1	lsimeB454
Lsi07G002610	Melon (DHL92) v3.5.1	lsimeB456
Lsi07G002610	Melon (DHL92) v3.5.1	lsimeB460
Lsi07G002610	Watermelon (Charleston Gray)	lsiwcgB414
Lsi07G002610	Watermelon (Charleston Gray)	lsiwcgB396
Lsi07G002610	Watermelon (Charleston Gray)	lsiwcgB402
Lsi07G002610	Watermelon (97103) v1	lsiwmB448
Lsi07G002610	Watermelon (97103) v1	lsiwmB451
Lsi07G002610	Watermelon (97103) v1	lsiwmB455
Lsi07G002610	Cucumber (Gy14) v2	cgyblsiB435
Lsi07G002610	Melon (DHL92) v3.6.1	lsimedB478
Lsi07G002610	Silver-seed gourd	carlsiB369
Lsi07G002610	Cucumber (Chinese Long) v3	cuclsiB499