CmoCh16G006680 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G006680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Peptidyl-prolyl cis-trans isomerase 1
Location	Cmo_Chr16 : 3319548 .. 3322776 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTAATTGTTAGTACCTTCGTCTAGATTCATTAATTAATACTTTTCTACATTTTTTAAAATTAAAAAATAATCTTAATATTAGTAATAGATTTAAAAAATCTGCAACCGTTGATATTTCAGAAGCACAGAAACGGACGGTGGAGATTGGATTGATAGCAGTACGGAAACGAAGTGGAAAAGTATCTCCAGTTCCCATTCTCTCGTGCCTACCATTGTCGAGTTCTCGCCACTATCTCCACCAATCCAAGTGAAAGAAAAAGCGAGGGCGGCGCCACCGTTGGTATCACAGGCTGCCAAGATAGATTCCGATCGCAAACGGAAGAAATCGGCTTCATCGATCTCCTCTGCGGATCGAACTGCGAAGGAAAAGCGTAGCAGCAGTAAGAAGAACAAGATGTCCTCTTCGGCGGCTGTCGGTCAGGTTAGGGCATCGCACATACTCATAAAGCACCAAGGTTCGCGACGTCCTGCTTCGTGGAAGGATCCGGAAGGCAGAATTATCAAGAACACTACTCGCGAAAGCGCCGTCTCTCAGCTTACTGTCATTCGAGAAGACATCATTTCCGGCAAGTCTAAGTTTGAGGATGTTGCCTCTCGCATTTCTGACTGCAGCTCTGCCAAGCGTGGCGGCGATCTAGGTGCGCTAACTAACCTCCTTTCTTGTTCTTTTTTATTTGTCATTTCTATTTGTGCCTGGATGTCTGTATCTTGCTTGGATTTTATTGGAGATATGTGTCGATTATATTACGTATTTGTATTAGGGTTGGAATTCATCTCGTTTTGGTTGTACATGTCTCTAAGTTGAACTTCTACTTGCGTTCTGAAAATCCTATTATGATCCTGCATTGTTAAGGCTCTTAACACTTATCACAAGATTGTGAAAGATTTGGTTACCTTAGATTCTTGGACGAAGTTGATTGTGTTATGAATTACGGACCTTCACAATGGTACGATATTGTCCACTTTGAGCATAAGCTCTCGTAGCTTTGCTTTTGGTTTTCCTAAAATGGCTCATACCAATGGAGATTTATTCATTACTTATAAACCCATGATTGTCCCCTTAATTAGCCAACGTGGGACTCCCTCCCAATGATCCTCCCCTCGAACAAAGTACACCTTAGAGCCTCCTCTGAGGCCTATGGAGCCCTCGAACAATGTACCTTTAAATCAAGATTGACACCTTTCTCTGAAGCCCTCGAACAAAGTACACCCTTTGTTCGATACTTGAGTCACTTTTGACTACACCTTCGAGGCTAGCAACTTCTTTGTTCGACACTTGAGGATTCGATTAGCATGACTAAGTTAAGGGCATGACTCCGATACGATATTAGGAATTACGGACCTCCACAATGGTATGATATTGTCCACTTTGAGCCTAAGCTCTCGTAACTTTGTTTTAAGTTTTCCCAAAAGGCCTCATACCAATGGAGATGTATTACTTACTTATAAATCCATGATCATCTCCTTAATTAGCCAATGTGGGACTTCCTCTCAACCTCCCAACAATCCTCAACCGTTGATGCTACTACGATGGATATAATTAGTTGTGTTGACCATTTTACTTAAAAGCCTATGGAAGGATTACTTAGTGCTTGATTTTAGCTTAGAGCTAAACAGGATTTTCTGATGGCATGTCAATTTGTTTCACCATCTATTCAATTGGGAATCCATCTAGAGCTCTTCTTATATTTGGTAAAACGCAGTAACATCAACACTATGAAAGTGCCCCTATCTAGAAAATTTCTGCCTGCTGGTGTGAATAAACTTTTGGCCCCGGCTAATACTTTTACCCGTTACTAGCATTCCACCATAAACTGGTACATCATCTGAACTGTATAATTGGTTCTATTTAATCTTGTAGTCTATTTTCCCCCTCTGAACTGTATATTTCAAGTTAGTTTTACCGGAGCCATAGTCTTTTACCTCCTTTTTTTTTCCCCCTTCATATTTATAATCTTTCAGTTAGAACAGATTAAGGAGAAAACTTTAAAATCTTTTGTTAACTTTTACAATATAAGATGAGCATTGAGGGGGACTACTGCCTCCCCCTCCTTTTCCGCTCCACCCTTGGTTTTGTCTGCTAGAAATTTGTAGTTATGTACTCATCTTGCAAGCCCAGTTGATACTCTCCCAAAGAGTAAAGAGTAATTGTGTTTGTGTGATGTCCCATATTGGTTGGAGAGGAGAACAAAACACTAATTATATGGGTGTGGAAACCTTCTCCTAGCAGACGCGTTTTAAAGCCTCGAGGAGAAGCCCGAAAGGGAGAGCCCAAAGAGGACAATATCTACTAACGGTGGGCATGGGTCGTTACAAATGGTATCAGAGCCAGACATCGGACTATGTGCCAACGAGGAGGCTATTCCCCGAAGTGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACACTGGGCCCCGAATGGGATGGATTTGGTGGCGGTCCCACATCGATTAGATAAAGGAACGAGTGCCAGCGAGGACGCTGGACCCCGAAGGGGGGGTAGTTTGTGATGTCCCACATTAGTTGGGGAGGAGAACAAAACACCATTTATAAGGGTGTGGAAACCTTCTTCTATCCTTGAGAGGAAGCTCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGTAGTGGGTCTGGATGGTTACAATTTGGTAGTTCAATAGCAGTTTTTTAGACAATTTCTAGGATCAGAAGGATATGCTGGGATGTTCTATTCGTTATTAGCTGACATTTTATACTAGCAATTGTTTGTGCGTGGATTAGCATGAAATACACAGCATCTGAATGAGCCAACACAATAATGTTATTGCAGGTCCTTTCGGGCGTGGCCAGATGCAGAAGCCTTTTGAAGAAGCAACATTTGCCCTCAAGGTTGGAGAGGTAAGCGACATTGTGGATACTGACAGTGGAGTTCACATAATCAAGCGGATTGCTTAACTTCTCTCATGAATTTCCATGCTCTACTGATGAAGCATTTAATCCATTTGGCCTTTGGGCAAGTCGAAGTGTTCAAGTAGGGTTTGGCTATAGCTACTCTGTTTCAGTGACCTAAGATTTTTCTGCAGTTCCATGATTTATGCCATTGAATTATTGCCTTTTTAAATGCGACAACATTAACGCTCACGCCGATATGGTTTGAATTGTTTGCACCCATAAAGTAGAAAGTCGAACATCTGACTTTTTGATCAATATTATTATTTATGATTTATCTGTTCAATTTGAT

mRNA sequence

ATGCGAAGCACAGAAACGGACGGTGGAGATTGGATTGATAGCAGTACGGAAACGAAGTGGAAAAGTATCTCCAGTTCCCATTCTCTCGTGCCTACCATTGTCGAGTTCTCGCCACTATCTCCACCAATCCAAGTGAAAGAAAAAGCGAGGGCGGCGCCACCGTTGGTATCACAGGCTGCCAAGATAGATTCCGATCGCAAACGGAAGAAATCGGCTTCATCGATCTCCTCTGCGGATCGAACTGCGAAGGAAAAGCGTAGCAGCAGTAAGAAGAACAAGATGTCCTCTTCGGCGGCTGTCGGTCAGGTTAGGGCATCGCACATACTCATAAAGCACCAAGGTTCGCGACGTCCTGCTTCGTGGAAGGATCCGGAAGGCAGAATTATCAAGAACACTACTCGCGAAAGCGCCGTCTCTCAGCTTACTGTCATTCGAGAAGACATCATTTCCGGCAAGTCTAAGTTTGAGGATGTTGCCTCTCGCATTTCTGACTGCAGCTCTGCCAAGCGTGGCGGCGATCTAGGTCCTTTCGGGCGTGGCCAGATGCAGAAGCCTTTTGAAGAAGCAACATTTGCCCTCAAGGTTGGAGAGGTAAGCGACATTGTGGATACTGACAGTGGAGTTCACATAATCAAGCGGATTGCTTAACTTCTCTCATGAATTTCCATGCTCTACTGATGAAGCATTTAATCCATTTGGCCTTTGGGCAAGTCGAAGTGTTCAAGTAGGGTTTGGCTATAGCTACTCTGTTTCAGTGACCTAAGATTTTTCTGCAGTTCCATGATTTATGCCATTGAATTATTGCCTTTTTAAATGCGACAACATTAACGCTCACGCCGATATGGTTTGAATTGTTTGCACCCATAAAGTAGAAAGTCGAACATCTGACTTTTTGATCAATATTATTATTTATGATTTATCTGTTCAATTTGAT

Coding sequence (CDS)

ATGCGAAGCACAGAAACGGACGGTGGAGATTGGATTGATAGCAGTACGGAAACGAAGTGGAAAAGTATCTCCAGTTCCCATTCTCTCGTGCCTACCATTGTCGAGTTCTCGCCACTATCTCCACCAATCCAAGTGAAAGAAAAAGCGAGGGCGGCGCCACCGTTGGTATCACAGGCTGCCAAGATAGATTCCGATCGCAAACGGAAGAAATCGGCTTCATCGATCTCCTCTGCGGATCGAACTGCGAAGGAAAAGCGTAGCAGCAGTAAGAAGAACAAGATGTCCTCTTCGGCGGCTGTCGGTCAGGTTAGGGCATCGCACATACTCATAAAGCACCAAGGTTCGCGACGTCCTGCTTCGTGGAAGGATCCGGAAGGCAGAATTATCAAGAACACTACTCGCGAAAGCGCCGTCTCTCAGCTTACTGTCATTCGAGAAGACATCATTTCCGGCAAGTCTAAGTTTGAGGATGTTGCCTCTCGCATTTCTGACTGCAGCTCTGCCAAGCGTGGCGGCGATCTAGGTCCTTTCGGGCGTGGCCAGATGCAGAAGCCTTTTGAAGAAGCAACATTTGCCCTCAAGGTTGGAGAGGTAAGCGACATTGTGGATACTGACAGTGGAGTTCACATAATCAAGCGGATTGCTTAA

Homology

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BLAST of CmoCh16G006680 vs. Swiss-Prot
Match: PIN1_MALDO (Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.3e-50
Identity = 99/118 (83.90%), Postives = 111/118 (94.07%), Query Frame = 1


Query: 96  SSAAVGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKF 155
           SS+A  QVRASHILIKHQGSRR ASWKDPEG+II+NTTR+SAVSQL  +R+DI+SGK+KF
Sbjct: 2   SSSAGNQVRASHILIKHQGSRRKASWKDPEGQIIRNTTRDSAVSQLKALRDDILSGKAKF 61

Query: 156 EDVASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 214
           +D+A+R SDCSSAKRGGDLGPFGR QMQKPFEEATFALKVGE+SDIVDTDSGVHIIKR
Sbjct: 62  DDLAARYSDCSSAKRGGDLGPFGRNQMQKPFEEATFALKVGEMSDIVDTDSGVHIIKR 119

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BLAST of CmoCh16G006680 vs. Swiss-Prot
Match: PIN1_ARATH (Peptidyl-prolyl cis-trans isomerase Pin1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.4e-48
Identity = 95/118 (80.51%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 98  AAVGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFED 157
           A+  QV+ASHILIKHQGSRR ASWKDPEG+II  TTRE+AV QL  IREDI+SGK+ FE+
Sbjct: 2   ASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEE 61

Query: 158 VASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRIA 216
           VA+R+SDCSSAKRGGDLG FGRGQMQKPFEEAT+ALKVG++SDIVDTDSGVHIIKR A
Sbjct: 62  VATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119

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BLAST of CmoCh16G006680 vs. Swiss-Prot
Match: PIN1_DIGLA (Peptidyl-prolyl cis-trans isomerase Pin1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-43
Identity = 86/112 (76.79%), Postives = 99/112 (88.39%), Query Frame = 1


Query: 102 QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFEDVASR 161
           +VRASHILIKHQGSRR +SWKDP+G +I  TTR+ AVSQL  +R++++S  + F D+ASR
Sbjct: 5   KVRASHILIKHQGSRRKSSWKDPDGSLISATTRDDAVSQLQSLRQELLSDPASFSDLASR 64

Query: 162 ISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 214
            S CSSAKRGGDLGPFGRGQMQKPFEEATFALKVGE+SDIVDTDSGVHIIKR
Sbjct: 65  HSHCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKR 116

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BLAST of CmoCh16G006680 vs. Swiss-Prot
Match: PIN1_RHIO9 (Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=pin1 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-25
Identity = 64/114 (56.14%), Postives = 81/114 (71.05%), Query Frame = 1


Query: 102 QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFEDVASR 161
           +VRASH+LIK + SRRP+SW++         ++E A+  LT  +  I SG+     +A+ 
Sbjct: 41  RVRASHLLIKSRESRRPSSWREEH----ITRSKEEALKILTDFQHKIESGQETLSALATN 100

Query: 162 ISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRIA 216
            SDC+SAKRGGDLG F RGQMQKPFEEATFAL+VGE+S  V TDSGVH+I R A
Sbjct: 101 YSDCTSAKRGGDLGYFERGQMQKPFEEATFALQVGELSKPVWTDSGVHLILRTA 150

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BLAST of CmoCh16G006680 vs. Swiss-Prot
Match: DOD_DROME (Putative peptidyl-prolyl cis-trans isomerase dodo OS=Drosophila melanogaster GN=dod PE=2 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-25
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 1


Query: 99  AVGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFEDV 158
           A  +V   H+L+KH+GSRRP+SW+  E  I +  T+E A   L V R  I+  ++ F+++
Sbjct: 54  APDEVHCLHLLVKHKGSRRPSSWR--EANITR--TKEEAQLLLEVYRNKIVQQEATFDEL 113

Query: 159 ASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRIA 216
           A   SDCSSAKRGGDLG FGRGQMQ  FE+A F L V ++S IVD+DSG+HII R A
Sbjct: 114 ARSYSDCSSAKRGGDLGKFGRGQMQAAFEDAAFKLNVNQLSGIVDSDSGLHIILRKA 166

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BLAST of CmoCh16G006680 vs. TrEMBL
Match: A0A0A0KZK7_CUCSA (Peptidylprolyl isomerase OS=Cucumis sativus GN=Csa_4G046790 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 112/122 (91.80%), Postives = 118/122 (96.72%), Query Frame = 1


Query: 94  MSSSAAVGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKS 153
           MSSSAA  QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIR DIISGK+
Sbjct: 1   MSSSAATAQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIRNDIISGKA 60

Query: 154 KFEDVASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 213
           KFED+A+RISDCSSAKRGGDLGPFGRGQMQKPFEEAT+ALKVGE+SDI+DTDSGVHIIKR
Sbjct: 61  KFEDIATRISDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIIDTDSGVHIIKR 120

Query: 214 IA 216
            A
Sbjct: 121 TA 122

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BLAST of CmoCh16G006680 vs. TrEMBL
Match: A0A061DFC2_THECC (Peptidylprolyl isomerase OS=Theobroma cacao GN=TCM_000228 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.7e-54
Identity = 124/173 (71.68%), Postives = 140/173 (80.92%), Query Frame = 1


Query: 58  QAAKIDSDRKRKKSASSISSADRT-AKEKRSSS----------------KKNKMSSSAAV 117
           +AAKIDSDRKRKK+  SISSADRT A EK+                   KK+KMSSS A 
Sbjct: 11  KAAKIDSDRKRKKA--SISSADRTEAAEKQKGKNPTSTSNHHHQSHHHRKKSKMSSSTAA 70

Query: 118 GQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFEDVAS 177
            QVRA+HILIKHQGSRR ASWKDPEGR+I NTTR++AVSQL  +R+DI+SGK+KF++VAS
Sbjct: 71  NQVRAAHILIKHQGSRRKASWKDPEGRVISNTTRDAAVSQLKALRDDIVSGKAKFDEVAS 130

Query: 178 RISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 214
           R SDCSSAKRGGDLGPFGRGQMQKPFE AT+ALKVGE+SDIVDTDSGVHII R
Sbjct: 131 RYSDCSSAKRGGDLGPFGRGQMQKPFENATYALKVGEISDIVDTDSGVHIIMR 181

[Close]

BLAST of CmoCh16G006680 vs. TrEMBL
Match: A0A0D2T5K4_GOSRA (Peptidylprolyl isomerase OS=Gossypium raimondii GN=B456_011G099300 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-54
Identity = 125/173 (72.25%), Postives = 142/173 (82.08%), Query Frame = 1


Query: 56  VSQAAKIDSDRKRKKSASSISSADRTA-------KEKRSSS--------KKNKMSSSAAV 115
           VS+AAKIDSDRKRKKS  SISSADRTA       K+K  +S        KK+KMSSS+  
Sbjct: 34  VSKAAKIDSDRKRKKS--SISSADRTAAKGGDQHKDKAPTSSTNHHHHKKKSKMSSSSPA 93

Query: 116 GQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFEDVAS 175
            QVRASHILIKHQGSRR ASWKDPEGR+I NTTR++AVSQL  +R+DI SG +KF +VAS
Sbjct: 94  NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRDAAVSQLKALRDDIASGNAKFGEVAS 153

Query: 176 RISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 214
           R SDCSSAKRGGDLGPFGRGQMQKPFE+AT++LK+GE+SDIVDTDSGVHII R
Sbjct: 154 RHSDCSSAKRGGDLGPFGRGQMQKPFEDATYSLKIGEISDIVDTDSGVHIIMR 204

[Close]

BLAST of CmoCh16G006680 vs. TrEMBL
Match: W9SN23_9ROSA (Peptidylprolyl isomerase OS=Morus notabilis GN=L484_026702 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53
Identity = 134/232 (57.76%), Postives = 162/232 (69.83%), Query Frame = 1


Query: 5   ETDGGDWIDSSTETKWKSISSSH---------SLVPTIVEFSPLSPPIQVKE------KA 64
           E DGG  I+ S   + K +  S          ++ P   +  P + P            +
Sbjct: 172 EDDGGVMIEDSDNERMKVVKCSQWAAKKNARRNVPPPNAKVDPTNVPPPKANIDPTTISS 231

Query: 65  RAAPPLVSQAAKIDS-DRKRKKSASSISSADRTAKEKRSSS----KKNKMSSSAAVG-QV 124
            ++ P+ +Q   I+S DRKRKK   SIS+ADRT  ++R SS    KK KMSSS++   QV
Sbjct: 232 HSSQPMSTQQTPIESSDRKRKKPPPSISAADRTKSKERGSSSSAKKKTKMSSSSSGNNQV 291

Query: 125 RASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFEDVASRIS 184
           RASHILIKHQGSRR ASWKDPEGR+I NTTR++AVSQL  +R+DI+SGK+KF+ VASR S
Sbjct: 292 RASHILIKHQGSRRKASWKDPEGRVISNTTRDAAVSQLKSLRDDIVSGKAKFDAVASRYS 351

Query: 185 DCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRIA 216
           DCSSAKRGGDLGPFGRGQMQKPFEEAT+ALKVGE+SDIVDTDSGVHII R A
Sbjct: 352 DCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIVDTDSGVHIIMRTA 403

[Close]

BLAST of CmoCh16G006680 vs. TrEMBL
Match: A0A059AHH1_EUCGR (Peptidylprolyl isomerase (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_J02408 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 126/182 (69.23%), Postives = 147/182 (80.77%), Query Frame = 1


Query: 43  IQVKEKARAAPPLVSQAAKIDS-DRKRKK-SASSISSADRTAKEKRSSSKKN----KMSS 102
           +Q  E +R   P    +AKI+S DRKRK+ S+S+ISSAD +A +  S   K+    KMSS
Sbjct: 6   LQRSEGSRTRSPSSPASAKIESADRKRKRPSSSTISSADPSAAKSGSLRDKHRAKAKMSS 65

Query: 103 SAAVG-----QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISG 162
           SAA       QVRASHILIKH+GSRR ASWKDPEGR+I++TTRESAVSQL  +REDI++G
Sbjct: 66  SAAGAAAAGSQVRASHILIKHEGSRRKASWKDPEGRVIRSTTRESAVSQLKALREDIVAG 125

Query: 163 KSKFEDVASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHII 214
           K+KFED+ASR SDCSSAKRGGDLGPFGRGQMQKPFEEAT+ALKVGE+SDIVDTDSGVHII
Sbjct: 126 KAKFEDLASRFSDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIVDTDSGVHII 185

[Close]

BLAST of CmoCh16G006680 vs. TAIR10
Match: AT2G18040.1 (AT2G18040.1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1)

HSP 1 Score: 193.0 bits (489), Expect = 1.9e-49
Identity = 95/118 (80.51%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 98  AAVGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFED 157
           A+  QV+ASHILIKHQGSRR ASWKDPEG+II  TTRE+AV QL  IREDI+SGK+ FE+
Sbjct: 2   ASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEE 61

Query: 158 VASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKRIA 216
           VA+R+SDCSSAKRGGDLG FGRGQMQKPFEEAT+ALKVG++SDIVDTDSGVHIIKR A
Sbjct: 62  VATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119

[Close]

BLAST of CmoCh16G006680 vs. NCBI nr
Match: gi|659102324|ref|XP_008452069.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Cucumis melo])

HSP 1 Score: 227.3 bits (578), Expect = 2.6e-56
Identity = 114/122 (93.44%), Postives = 119/122 (97.54%), Query Frame = 1


Query: 94  MSSSAAVGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKS 153
           MSSSA  GQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIR+DIISGK+
Sbjct: 1   MSSSAPTGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIRDDIISGKA 60

Query: 154 KFEDVASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 213
           KFED+A+RISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGE+SDIVDTDSGVHIIKR
Sbjct: 61  KFEDIATRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKR 120

Query: 214 IA 216
            A
Sbjct: 121 TA 122

[Close]

BLAST of CmoCh16G006680 vs. NCBI nr
Match: gi|449457542|ref|XP_004146507.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 1.7e-55
Identity = 112/122 (91.80%), Postives = 118/122 (96.72%), Query Frame = 1


Query: 94  MSSSAAVGQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKS 153
           MSSSAA  QVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIR DIISGK+
Sbjct: 1   MSSSAATAQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIRNDIISGKA 60

Query: 154 KFEDVASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 213
           KFED+A+RISDCSSAKRGGDLGPFGRGQMQKPFEEAT+ALKVGE+SDI+DTDSGVHIIKR
Sbjct: 61  KFEDIATRISDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIIDTDSGVHIIKR 120

Query: 214 IA 216
            A
Sbjct: 121 TA 122

[Close]

BLAST of CmoCh16G006680 vs. NCBI nr
Match: gi|590702875|ref|XP_007046727.1| (Peptidylprolyl cis/trans isomerase [Theobroma cacao])

HSP 1 Score: 220.7 bits (561), Expect = 2.5e-54
Identity = 124/173 (71.68%), Postives = 140/173 (80.92%), Query Frame = 1


Query: 58  QAAKIDSDRKRKKSASSISSADRT-AKEKRSSS----------------KKNKMSSSAAV 117
           +AAKIDSDRKRKK+  SISSADRT A EK+                   KK+KMSSS A 
Sbjct: 11  KAAKIDSDRKRKKA--SISSADRTEAAEKQKGKNPTSTSNHHHQSHHHRKKSKMSSSTAA 70

Query: 118 GQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFEDVAS 177
            QVRA+HILIKHQGSRR ASWKDPEGR+I NTTR++AVSQL  +R+DI+SGK+KF++VAS
Sbjct: 71  NQVRAAHILIKHQGSRRKASWKDPEGRVISNTTRDAAVSQLKALRDDIVSGKAKFDEVAS 130

Query: 178 RISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 214
           R SDCSSAKRGGDLGPFGRGQMQKPFE AT+ALKVGE+SDIVDTDSGVHII R
Sbjct: 131 RYSDCSSAKRGGDLGPFGRGQMQKPFENATYALKVGEISDIVDTDSGVHIIMR 181

[Close]

BLAST of CmoCh16G006680 vs. NCBI nr
Match: gi|823241249|ref|XP_012453241.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase ssp-1-like [Gossypium raimondii])

HSP 1 Score: 220.3 bits (560), Expect = 3.2e-54
Identity = 125/173 (72.25%), Postives = 142/173 (82.08%), Query Frame = 1


Query: 56  VSQAAKIDSDRKRKKSASSISSADRTA-------KEKRSSS--------KKNKMSSSAAV 115
           VS+AAKIDSDRKRKKS  SISSADRTA       K+K  +S        KK+KMSSS+  
Sbjct: 102 VSKAAKIDSDRKRKKS--SISSADRTAAKGGDQHKDKAPTSSTNHHHHKKKSKMSSSSPA 161

Query: 116 GQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFEDVAS 175
            QVRASHILIKHQGSRR ASWKDPEGR+I NTTR++AVSQL  +R+DI SG +KF +VAS
Sbjct: 162 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRDAAVSQLKALRDDIASGNAKFGEVAS 221

Query: 176 RISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 214
           R SDCSSAKRGGDLGPFGRGQMQKPFE+AT++LK+GE+SDIVDTDSGVHII R
Sbjct: 222 RHSDCSSAKRGGDLGPFGRGQMQKPFEDATYSLKIGEISDIVDTDSGVHIIMR 272

[Close]

BLAST of CmoCh16G006680 vs. NCBI nr
Match: gi|763804030|gb|KJB70968.1| (hypothetical protein B456_011G099300 [Gossypium raimondii])

HSP 1 Score: 220.3 bits (560), Expect = 3.2e-54
Identity = 125/173 (72.25%), Postives = 142/173 (82.08%), Query Frame = 1


Query: 56  VSQAAKIDSDRKRKKSASSISSADRTA-------KEKRSSS--------KKNKMSSSAAV 115
           VS+AAKIDSDRKRKKS  SISSADRTA       K+K  +S        KK+KMSSS+  
Sbjct: 34  VSKAAKIDSDRKRKKS--SISSADRTAAKGGDQHKDKAPTSSTNHHHHKKKSKMSSSSPA 93

Query: 116 GQVRASHILIKHQGSRRPASWKDPEGRIIKNTTRESAVSQLTVIREDIISGKSKFEDVAS 175
            QVRASHILIKHQGSRR ASWKDPEGR+I NTTR++AVSQL  +R+DI SG +KF +VAS
Sbjct: 94  NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRDAAVSQLKALRDDIASGNAKFGEVAS 153

Query: 176 RISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEVSDIVDTDSGVHIIKR 214
           R SDCSSAKRGGDLGPFGRGQMQKPFE+AT++LK+GE+SDIVDTDSGVHII R
Sbjct: 154 RHSDCSSAKRGGDLGPFGRGQMQKPFEDATYSLKIGEISDIVDTDSGVHIIMR 204

The following BLAST results are available for this feature:

BLAST of CmoCh16G006680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PIN1_MALDO	1.3e-50	83.90	Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1	[more]
PIN1_ARATH	3.4e-48	80.51	Peptidyl-prolyl cis-trans isomerase Pin1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV...	[more]
PIN1_DIGLA	2.0e-43	76.79	Peptidyl-prolyl cis-trans isomerase Pin1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV...	[more]
PIN1_RHIO9	2.4e-25	56.14	Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizopus delemar (strain RA 99-880 /...	[more]
DOD_DROME	3.1e-25	52.99	Putative peptidyl-prolyl cis-trans isomerase dodo OS=Drosophila melanogaster GN=...	[more]

BLAST of CmoCh16G006680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZK7_CUCSA	1.2e-55	91.80	Peptidylprolyl isomerase OS=Cucumis sativus GN=Csa_4G046790 PE=4 SV=1	[more]
A0A061DFC2_THECC	1.7e-54	71.68	Peptidylprolyl isomerase OS=Theobroma cacao GN=TCM_000228 PE=4 SV=1	[more]
A0A0D2T5K4_GOSRA	2.2e-54	72.25	Peptidylprolyl isomerase OS=Gossypium raimondii GN=B456_011G099300 PE=4 SV=1	[more]
W9SN23_9ROSA	1.1e-53	57.76	Peptidylprolyl isomerase OS=Morus notabilis GN=L484_026702 PE=4 SV=1	[more]
A0A059AHH1_EUCGR	1.2e-52	69.23	Peptidylprolyl isomerase (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_J02408 PE=4...	[more]

BLAST of CmoCh16G006680 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18040.1	1.9e-49	80.51	peptidylprolyl cis/trans isomerase, NIMA-interacting 1	[more]

BLAST of CmoCh16G006680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102324\|ref\|XP_008452069.1\|	2.6e-56	93.44	PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Cucumis melo]	[more]
gi\|449457542\|ref\|XP_004146507.1\|	1.7e-55	91.80	PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Cucumis sativus]	[more]
gi\|590702875\|ref\|XP_007046727.1\|	2.5e-54	71.68	Peptidylprolyl cis/trans isomerase [Theobroma cacao]	[more]
gi\|823241249\|ref\|XP_012453241.1\|	3.2e-54	72.25	PREDICTED: peptidyl-prolyl cis-trans isomerase ssp-1-like [Gossypium raimondii]	[more]
gi\|763804030\|gb\|KJB70968.1\|	3.2e-54	72.25	hypothetical protein B456_011G099300 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000297	PPIase_PpiC
IPR023058	PPIase_PpiC_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0016853	isomerase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0006833	water transport
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0009853	photorespiration
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0007030	Golgi organization
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0016853	isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G006680.1	CmoCh16G006680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000297	Peptidyl-prolyl cis-trans isomerase, PpiC-type	PFAM	PF00639	Rotamase	coord: 107..214 score: 2.3
IPR000297	Peptidyl-prolyl cis-trans isomerase, PpiC-type	PROFILE	PS50198	PPIC_PPIASE_2	coord: 100..215 score: 28
IPR023058	Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site	PROSITE	PS01096	PPIC_PPIASE_1	coord: 155..175 scor
None	No IPR available	GENE3D	G3DSA:3.10.50.40		coord: 102..214 score: 2.0
None	No IPR available	PANTHER	PTHR10657	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 86..214 score: 1.3
None	No IPR available	PANTHER	PTHR10657:SF4	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1	coord: 86..214 score: 1.3
None	No IPR available	unknown	SSF54534	FKBP-like	coord: 99..214 score: 8.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G006680	Cucsa.106590	Cucumber (Gy14) v1	cgycmoB0244
CmoCh16G006680	CmaCh16G006120	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G006680	CmaCh04G007520	Cucurbita maxima (Rimu)	cmacmoB700
CmoCh16G006680	Cla014591	Watermelon (97103) v1	cmowmB301
CmoCh16G006680	Csa4G046790	Cucumber (Chinese Long) v2	cmocuB325
CmoCh16G006680	ClCG07G008440	Watermelon (Charleston Gray)	cmowcgB294
CmoCh16G006680	CSPI04G05560	Wild cucumber (PI 183967)	cmocpiB332
CmoCh16G006680	Lsi07G002610	Bottle gourd (USVL1VR-Ls)	cmolsiB315
CmoCh16G006680	Cp4.1LG14g01860	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G006680	Cp4.1LG01g06740	Cucurbita pepo (Zucchini)	cmocpeB316
CmoCh16G006680	MELO3C016378.2	Melon (DHL92) v3.6.1	cmomedB336
CmoCh16G006680	CsaV3_4G005720	Cucumber (Chinese Long) v3	cmocucB0388
CmoCh16G006680	Cla97C07G135510	Watermelon (97103) v2	cmowmbB336
CmoCh16G006680	Bhi01G001840	Wax gourd	cmowgoB0437
CmoCh16G006680	CsGy4G005440	Cucumber (Gy14) v2	cgybcmoB467
CmoCh16G006680	Carg05735	Silver-seed gourd	carcmoB1366
CmoCh16G006680	Carg14150	Silver-seed gourd	carcmoB1258

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G006680	CmoCh04G008010	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G006680	Silver-seed gourd	carcmoB0546
CmoCh16G006680	Cucumber (Chinese Long) v3	cmocucB0405
CmoCh16G006680	Watermelon (97103) v2	cmowmbB309
CmoCh16G006680	Wax gourd	cmowgoB0428
CmoCh16G006680	Cucurbita moschata (Rifu)	cmocmoB284
CmoCh16G006680	Wild cucumber (PI 183967)	cmocpiB342
CmoCh16G006680	Cucumber (Chinese Long) v2	cmocuB334
CmoCh16G006680	Melon (DHL92) v3.5.1	cmomeB294
CmoCh16G006680	Melon (DHL92) v3.5.1	cmomeB303
CmoCh16G006680	Watermelon (Charleston Gray)	cmowcgB288
CmoCh16G006680	Watermelon (97103) v1	cmowmB317
CmoCh16G006680	Bottle gourd (USVL1VR-Ls)	cmolsiB292
CmoCh16G006680	Cucumber (Gy14) v2	cgybcmoB730
CmoCh16G006680	Melon (DHL92) v3.6.1	cmomedB347