Lsi05G015990 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G015990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_3
Location	chr05 : 23742883 .. 23743597 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTGAGAAAGACATTTTCCCTCCATTTCTCTTCTCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGTCTCCATTCTTCGCCCAAAAAACGTAAGTTGCTTCACTTTTCGAACTCGGTTTCATCGCTTACATTCTCTGTTTCTCAACTCTTCTTCTGTTGCTTCTTTTTAAAATGCCACCATTTCCCCTTCTGTTTCTGTTCTTTCACTTCAAAATTATGGGGAAAAGAATCTCTTCAACACCCTTTGAAGTTCAAGTTCTTCTTTTTTTTTTTTTTCCTTCATATTTTTTGGGTTATTTAATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCTTGTCCCTGTGAAGATGTTCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGAAGCTTTCAACTTCCTAAACACACAGTTTCTCCACCAATGTACATAAAATATTTATAATGCTTTTATATACTGAAGGGAAAAAGAAAAAAAAAAGGAATGCCCGGAAATAAAAGTTTTCCTTCTCCATTTTCATCTTTTTTTTTTTTCTCTCTCTCTTCTTCTAAATTTTTGTGTAGCTTCTTACAGTTGCTTTGTCCATTTCAGCAGTTGAATTCTACATCTTATATTTTCAAGGTTGATTCTGATAATGACATGAGACAACTATTGAAT

mRNA sequence

ATGAAACATTTTCCCTCCATTTCTCTTCTCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGTCTCCATTCTTCGCCCAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCTTGTCCCTGTGAAGATGTTCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGAAGCTTTCAACTTCCTAAACACACAGTTTCTCCACCAATGTACATAAAATATTTATAATGCTTTTATATACTGAAGGGAAAAAGAAAAAAAAAAGGAATGCCCGGAAATAAAAGTTTTCCTTCTCCATTTTCATCTTTTTTTTTTTTCTCTCTCTCTTCTTCTAAATTTTTGTGTAGCTTCTTACAGTTGCTTTGTCCATTTCAGCAGTTGAATTCTACATCTTATATTTTCAAGGTTGATTCTGATAATGACATGAGACAACTATTGAAT

Coding sequence (CDS)

ATGAAACATTTTCCCTCCATTTCTCTTCTCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGTCTCCATTCTTCGCCCAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCTTGTCCCTGTGAAGATGTTCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA

Protein sequence

MKHFPSISLLQMGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ

Homology

[Close]

BLAST of Lsi05G015990 vs. TrEMBL
Match: A0A0A0L7K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 12 MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 71
          MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

Query: 72 Q 73
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Lsi05G015990 vs. TrEMBL
Match: M1CYA3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 12 MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 71
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 72 KQ 73
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Lsi05G015990 vs. TrEMBL
Match: A0A0V0GKY9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 12 MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 71
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 72 KQ 73
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Lsi05G015990 vs. TrEMBL
Match: K4CVH5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 12 MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 71
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 72 KQ 73
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Lsi05G015990 vs. TrEMBL
Match: M5XVP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024671mg PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.9e-24
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 12 MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 71
          MGWL SLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVE+HTP  P 
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTPSLPS 60

Query: 72 Q 73
          +
Sbjct: 61 K 61

[Close]

BLAST of Lsi05G015990 vs. NCBI nr
Match: gi|700201856|gb|KGN56989.1| (hypothetical protein Csa_3G147230 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 12 MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 71
          MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

Query: 72 Q 73
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Lsi05G015990 vs. NCBI nr
Match: gi|743785936|ref|XP_011026407.1| (PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica])

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-24
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 9   LLQMGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPL 68
           L QMGWLQSL SPLKKLWFRLHS+PKKRRGIYILYEDVKSC  EDVHVLWSILVESHTP 
Sbjct: 60  LFQMGWLQSLLSPLKKLWFRLHSTPKKRRGIYILYEDVKSCQYEDVHVLWSILVESHTPS 119

Query: 69  PPKQ 73
            P +
Sbjct: 120 LPSK 123

[Close]

BLAST of Lsi05G015990 vs. NCBI nr
Match: gi|596245989|ref|XP_007224549.1| (hypothetical protein PRUPE_ppa024671mg [Prunus persica])

HSP 1 Score: 117.5 bits (293), Expect = 9.8e-24
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 12 MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 71
          MGWL SLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVE+HTP  P 
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTPSLPS 60

Query: 72 Q 73
          +
Sbjct: 61 K 61

[Close]

BLAST of Lsi05G015990 vs. NCBI nr
Match: gi|566190019|ref|XP_002315774.2| (hypothetical protein POPTR_0010s09850g, partial [Populus trichocarpa])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 9   LLQMGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP- 68
           LLQMGWLQSL SPLKKLWFRLHS+PK RRGIYILYEDVKSC  EDVHVLWSILVES+TP 
Sbjct: 58  LLQMGWLQSLLSPLKKLWFRLHSTPKNRRGIYILYEDVKSCQYEDVHVLWSILVESNTPS 117

Query: 69  LPPKQ 73
           LP KQ
Sbjct: 118 LPSKQ 122

[Close]

BLAST of Lsi05G015990 vs. NCBI nr
Match: gi|297737042|emb|CBI26243.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-23
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 12 MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 71
          MGWLQSLFSPLKKLWFRLHS+ +K RGIYILYEDVKSCP EDVHVLWSILVESH+P PP 
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKSRGIYILYEDVKSCPYEDVHVLWSILVESHSPSPPS 60

Query: 72 Q 73
          +
Sbjct: 61 K 61

The following BLAST results are available for this feature:

BLAST of Lsi05G015990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G015990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7K5_CUCSA	2.4e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1	[more]
M1CYA3_SOLTU	3.1e-24	88.71	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1	[more]
A0A0V0GKY9_SOLCH	3.1e-24	88.71	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
K4CVH5_SOLLC	3.1e-24	88.71	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M5XVP0_PRUPE	6.9e-24	86.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024671mg PE=4 SV=1	[more]

BLAST of Lsi05G015990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G015990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201856\|gb\|KGN56989.1\|	3.5e-29	100.00	hypothetical protein Csa_3G147230 [Cucumis sativus]	[more]
gi\|743785936\|ref\|XP_011026407.1\|	5.8e-24	85.94	PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]	[more]
gi\|596245989\|ref\|XP_007224549.1\|	9.8e-24	86.89	hypothetical protein PRUPE_ppa024671mg [Prunus persica]	[more]
gi\|566190019\|ref\|XP_002315774.2\|	1.3e-23	87.69	hypothetical protein POPTR_0010s09850g, partial [Populus trichocarpa]	[more]
gi\|297737042\|emb\|CBI26243.3\|	2.2e-23	85.25	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G015990.1	Lsi05G015990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 12..65 score: 2.0
None	No IPR available	PANTHER	PTHR33181:SF3	SUBFAMILY NOT NAMED	coord: 12..65 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G015990	Csa3G147230	Cucumber (Chinese Long) v2	culsiB209
Lsi05G015990	CSPI03G13190	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G015990	CmaCh06G014140	Cucurbita maxima (Rimu)	cmalsiB764
Lsi05G015990	CmaCh14G017020	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G015990	CmoCh06G014160	Cucurbita moschata (Rifu)	cmolsiB757
Lsi05G015990	CmoCh14G017450	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G015990	Cla021630	Watermelon (97103) v1	lsiwmB365
Lsi05G015990	ClCG09G007150	Watermelon (Charleston Gray)	lsiwcgB313
Lsi05G015990	Cla97C09G169760	Watermelon (97103) v2	lsiwmbB350
Lsi05G015990	Cla97C05G086400	Watermelon (97103) v2	lsiwmbB333
Lsi05G015990	Cp4.1LG03g10810	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G015990	CsGy3G013310	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G015990	Carg23526	Silver-seed gourd	carlsiB772
Lsi05G015990	CsaV3_3G013360	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G015990	Wax gourd	lsiwgoB446
Lsi05G015990	Cucumber (Gy14) v1	cgylsiB415
Lsi05G015990	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G015990	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G015990	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G015990	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G015990	Silver-seed gourd	carlsiB551