Carg23526 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23526
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cDNA clone:J013105D21, full insert sequence
Location	Cucurbita_argyrosperma_scaffold_278 : 166871 .. 167506 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGTCGAAAAAACGTAAGTTGCCTTCCCTTTTCGAGCTTGCTTTCGTCGCTTACATTCTCTATTTCTTTGTTTAGCCTGCATTTCTGCACCTTCTTCTGTTGCTTCCTTTTTCCCTGCAATGACAGCATTTTCATATTTTGAACAGCCATTTCTCCTTCCCTTCCTGTTCTTTCACATGAAAATTGTGCAGAAAAGAATCTCTTCAACACCCTACTAAGTTTTTTCATATTTTCTGGGTTGTTTAATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTCAAATCATGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTTCATTTCCACCAAAACAATGAAGCTTTCAACCTCCTAAACACAGTTTCCCCAGCAATGTACATAAAATATTTATAATGCTTTACATACTGAAGGGGGGAAAAAATGAATGCCCAGAAATAAAAGTTTACCTTCACCATTTTCACCATTTTTCTCTCCTGTCTAATTTTTTGTGTAGCTTCTTACAGTAGTTGCCTTGTCCATTTCAGCAGTTGTAGTGGCAGTTGAATTCTAA

mRNA sequence

ATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGTCGAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTCAAATCATGTCCCTGTGAAGATGTGCATCTTCTTACAGTAGTTGCCTTGTCCATTTCAGCAGTTGTAGTGGCAGTTGAATTCTAA

Coding sequence (CDS)

ATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGTCGAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTCAAATCATGTCCCTGTGAAGATGTGCATCTTCTTACAGTAGTTGCCTTGTCCATTTCAGCAGTTGTAGTGGCAGTTGAATTCTAA

Protein sequence

MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISAVVVAVEF

Homology

[Close]

BLAST of Carg23526 vs. NCBI nr
Match: KGN56989.1 (hypothetical protein Csa_3G147230 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 47
          MGWLQS FSPLKKLWFRLHSS KKRRGIYILYEDVKSCPCEDVH+L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVL 46

[Close]

BLAST of Carg23526 vs. NCBI nr
Match: KHG28560.1 (Putative serine/threonine-protein kinase yrzF [Gossypium arboreum])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA 56
          MGWLQS FSPLKKLWFRLHS+ +KRRGIYILYEDVKSCPCEDVH+L  + +  +A
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKRRGIYILYEDVKSCPCEDVHVLWSILVESNA 55

[Close]

BLAST of Carg23526 vs. NCBI nr
Match: PHT38775.1 (hypothetical protein CQW23_22348 [Capsicum baccatum] >PHT85969.1 hypothetical protein T459_08075 [Capsicum annuum])

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 47
          MGWLQS FSPLKKLWFRLHS+ KKRRGIYILYEDVKSCPCEDV +L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVL 46

[Close]

BLAST of Carg23526 vs. NCBI nr
Match: PHU21929.1 (hypothetical protein BC332_07036, partial [Capsicum chinense])

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 47
          MGWLQS FSPLKKLWFRLHS+ KKRRGIYILYEDVKSCPCEDV +L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVL 46

[Close]

BLAST of Carg23526 vs. NCBI nr
Match: PSR85360.1 (RNA-directed RNA polymerase [Actinidia chinensis var. chinensis])

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 47
          MGWLQS FSPLKKLW R+HS+ KKRRGIYILYEDVKSCPCEDVH+L
Sbjct: 1  MGWLQSLFSPLKKLWVRMHSAQKKRRGIYILYEDVKSCPCEDVHVL 46

[Close]

BLAST of Carg23526 vs. TrEMBL
Match: tr|A0A0A0L7K5|A0A0A0L7K5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 47
          MGWLQS FSPLKKLWFRLHSS KKRRGIYILYEDVKSCPCEDVH+L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVL 46

[Close]

BLAST of Carg23526 vs. TrEMBL
Match: tr|A0A0B0PU66|A0A0B0PU66_GOSAR (Putative serine/threonine-protein kinase yrzF OS=Gossypium arboreum OX=29729 GN=F383_12631 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.9e-17
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLLTVVALSISA 56
          MGWLQS FSPLKKLWFRLHS+ +KRRGIYILYEDVKSCPCEDVH+L  + +  +A
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKRRGIYILYEDVKSCPCEDVHVLWSILVESNA 55

[Close]

BLAST of Carg23526 vs. TrEMBL
Match: tr|A0A2G3CT74|A0A2G3CT74_CAPCH (Uncharacterized protein (Fragment) OS=Capsicum chinense OX=80379 GN=BC332_07036 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-16
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 47
          MGWLQS FSPLKKLWFRLHS+ KKRRGIYILYEDVKSCPCEDV +L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVL 46

[Close]

BLAST of Carg23526 vs. TrEMBL
Match: tr|A0A2G2ZVG2|A0A2G2ZVG2_CAPAN (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_08075 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-16
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 47
          MGWLQS FSPLKKLWFRLHS+ KKRRGIYILYEDVKSCPCEDV +L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVL 46

[Close]

BLAST of Carg23526 vs. TrEMBL
Match: tr|A0A2R6P510|A0A2R6P510_ACTCH (RNA-directed RNA polymerase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc33350 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 47
          MGWLQS FSPLKKLW R+HS+ KKRRGIYILYEDVKSCPCEDVH+L
Sbjct: 1  MGWLQSLFSPLKKLWVRMHSAQKKRRGIYILYEDVKSCPCEDVHVL 46

The following BLAST results are available for this feature:

BLAST of Carg23526 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56989.1	2.3e-17	93.48	hypothetical protein Csa_3G147230 [Cucumis sativus]	[more]
KHG28560.1	1.5e-16	76.36	Putative serine/threonine-protein kinase yrzF [Gossypium arboreum]	[more]
PHT38775.1	4.3e-16	89.13	hypothetical protein CQW23_22348 [Capsicum baccatum] >PHT85969.1 hypothetical pr...	[more]
PHU21929.1	4.3e-16	89.13	hypothetical protein BC332_07036, partial [Capsicum chinense]	[more]
PSR85360.1	4.3e-16	86.96	RNA-directed RNA polymerase [Actinidia chinensis var. chinensis]	[more]

BLAST of Carg23526 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg23526 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23526 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7K5\|A0A0A0L7K5_CUCSA	1.5e-17	93.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1	[more]
tr\|A0A0B0PU66\|A0A0B0PU66_GOSAR	9.9e-17	76.36	Putative serine/threonine-protein kinase yrzF OS=Gossypium arboreum OX=29729 GN=...	[more]
tr\|A0A2G3CT74\|A0A2G3CT74_CAPCH	2.9e-16	89.13	Uncharacterized protein (Fragment) OS=Capsicum chinense OX=80379 GN=BC332_07036 ...	[more]
tr\|A0A2G2ZVG2\|A0A2G2ZVG2_CAPAN	2.9e-16	89.13	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_08075 PE=4 SV=1	[more]
tr\|A0A2R6P510\|A0A2R6P510_ACTCH	2.9e-16	86.96	RNA-directed RNA polymerase OS=Actinidia chinensis var. chinensis OX=1590841 GN=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23526-RA	Carg23526-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181:SF3	SUBFAMILY NOT NAMED	coord: 1..50
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 1..50

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23526	Cla021630	Watermelon (97103) v1	carwmB0849
Carg23526	Csa3G147230	Cucumber (Chinese Long) v2	carcuB0865
Carg23526	ClCG09G007150	Watermelon (Charleston Gray)	carwcgB0820
Carg23526	CSPI03G13190	Wild cucumber (PI 183967)	carcpiB0884
Carg23526	CmaCh06G014140	Cucurbita maxima (Rimu)	carcmaB1177
Carg23526	CmaCh14G017020	Cucurbita maxima (Rimu)	carcmaB1174
Carg23526	CmoCh14G017450	Cucurbita moschata (Rifu)	carcmoB1142
Carg23526	CmoCh06G014160	Cucurbita moschata (Rifu)	carcmoB1145
Carg23526	Lsi05G015990	Bottle gourd (USVL1VR-Ls)	carlsiB772
Carg23526	Cp4.1LG03g10810	Cucurbita pepo (Zucchini)	carcpeB1183
Carg23526	CsGy3G013310	Cucumber (Gy14) v2	carcgybB0838
Carg23526	CsaV3_3G013360	Cucumber (Chinese Long) v3	carcucB0889
Carg23526	Cla97C05G086400	Watermelon (97103) v2	carwmbB0883
Carg23526	Cla97C09G169760	Watermelon (97103) v2	carwmbB0886

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23526	Cucurbita pepo (Zucchini)	carcpeB1184
Carg23526	Melon (DHL92) v3.5.1	carmeB0839
Carg23526	Melon (DHL92) v3.6.1	carmedB0850
Carg23526	Watermelon (Charleston Gray)	carwcgB0821
Carg23526	Wax gourd	carwgoB0988
Carg23526	Silver-seed gourd	carcarB545
Carg23526	Cucumber (Gy14) v1	carcgyB0970