CmaCh14G017020 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G017020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_3
Location	Cma_Chr14 : 12617458 .. 12620186 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACAAAATCCCTCTTTCTTGTCTAAGCTAAAAGAAAAGAAAAGAAAAGAAAACCAAAAACAAATTCACACCTTTGCTCTTTCTCTTACCCTCTGCCATGAGCTGAAAGGAATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGGTTCGACTCCATTCTTCGTCGAAAAAACGTAAGTCACCTCCCCTTTTCGAGCTTACTTTCGTCACTTACATTCTCTGTTTTTTTGTTTAGCCTGCATTTCTGCACCCTTCTTCTCTGTTGCTTCCTTTGACCCTGCAATGACAGCATTTTCATATTTTGAACAGCCATTTCTCCTTCCCTTCCTGTTCTTTCACATGAAAATTGTGCAGAAAAGAATCTCTTCAACACCCTACTAAGTTTTTTCATATTTTCTGGGTTGTTCAATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTCAAATCATGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTTCATTTCCACCAAAACAATGAAGCTTTCAACCTCCTAAACACAGTTTCCCCAGCAATGTACATAAAATATTTATAATGCTTTACATACTGAAGGGGGAAAAAATGAATGCCCAGAAATAAAAGTTTACCTTCACCATTTTCACCATTTTTCTCTCTTCTGTCTAATTTTTTGTGTAGCTTCTTACAGTAGTTGCTTTGTCCATTTCAGCAGTTGTGGTGGCAGTTGAATTCTAAATTCTATACCTTCAAGGTAGATTCTGATAATGACGTGAGACAACTGTTGATAGATGAGAATAATGGTTCGATTATATTCACTCTTTCCTTCATACATCCTGTAGGCTTAAGAGTCTAGGCTTGCTATTCAGACATTTGAAATAGGGGAAAAAAGAATAGAGAAATAAAGAGAGCCACAAAAATGATGAATCTGGTTGTGATAAAAACCCCTAATCTGATAAAGTGGCATTTGCTTAATGATATGGTAAGATGGTAAGGTTGTTCACTAATCCAAATCTACCAAATGACTGATATTACCAAGTGACTTGTGAACCTAATGGGAGGTTTAGCTCACAACTTCAAACCTTATTGAAACTAAACAACAATCAAAGAACATTATTAGAGATGCCACAAGGTAATGAAATAAAGAAAGACTCTTTCTTCAAGTTTCTGTCACATTGAGTAATATTTTTAATACAATCAGTTAACAGTAAGCCTTCCATAGTTTTTCTGCTAAACAATTTTCAGACCAGATTTACATTTTACATGACATGAAGACCTACTCTCTGAAAGCACGAATCGGTGGCCATTCAATAAGAAACTACTCCACTCGAAGTTTGACCATCTAACAAAATGCCTAAACCTGCAAAGAATAAACAGAATTTTTTATTAACACTTGCTTTCATCATGTTTTGTTCAGCCTCAGAGGGGAAAAAGACCAAACTCAATGTTGTACCATACTTCAATATGATAGAATACCAGATGTGTTATGGCTCCTATAGTGCACGTGCAACGTATTTGAGTGTTCAGTTCAGTCAGGACTTTCTTAATCCCCATAGAAAACACAGGTTTCCTAGCATTCAGTGAAGATTGGTACACAGAATACTAAGAGGACGCCAACATTCTTTTGACTAATTTTAGATACCATGTCTAGAGTTCAACATAAATTAGTTAGCATAAAGGTGCTGCAGAAATTATCAATTGGTTACAATTCAGCTGCCTAATGTGTCAGTACCTTCAAAGAGGCAGAAAGGATAATGAACTTCTCTTATCACAAGCAATAACATGAAGGTAATCGAATACTAAATATTTCTATGATTGGGAAAGAAAAGCTGTTTACATGATCTAATAAGTTGCTATAACATGAACATCGATAGCTCTGAGAGGGAGGAGGGAGGAGGGAGGAGGGAGGAGGAAGGGGGTGGGGAATTGGTAAGAAGAAAAAAAAAAATCAAATGGGACCACGAAAGATACTTATGACACGTGAACTGAGGCTGTATGGCTCCTGTGTGCTTATGGCTATCTGCTTATTGATATTAAAACAAAATGAAGTTCGTAAGATTTTTAAGTGGCATTACCAGAAACCAAACGAAATTATAAAGCAGATGGTGATGGCCGAGCAACCACACCAGGCAACCAAGCTTCCAAAAAGTTTTCACAGTCTATCTCTGCACGAGACAGGGCAGCAAGAGGAGTGACAGTAATCTGAATGGAATAATGAGCTTCTAATTAATGACGGCATATCTTCCATAATGATAAGTTTTAGTTTGTAAGGAAAACGATACACACATAGCCTTCTTGTAGATATTTGAAATCTGTATCTTCATCAGCAACAGCAGCACTTATTACCTACAAAGATAATAACTTACATTAACATTTACAAAGACAAAGTTCTATTCGATGATAAGCCAGGAACCATGATACAAAACAATCAACAAATCATCCAAAATGAGTTGCTCTAATTGGCTAATTGGAAGTTGAAGCTACCTCCAACAAGTCTACTGTCCTTTCCATTTTTCGTTTAGATACAATTTTACAGTATTTGGTATCAAAGCGAATAAAAAGATACGAGAAGATTGTAGAGTTCGAACGTAATAGTGGAGCAGTGTCTTTCGAGTGCTCTGAACCAGAAGATATCAATATTGCTGTCTCTTTTAATGAAAGAATTTGGATAGAGAGGCAGAGAACCAACCTGCCTCGCAAACAGCTCAGATGA

mRNA sequence

ATGCCACAAAATCCCTCTTTCTTGTCTAAGCTAAAAGAAAAGAAAAGAAAAGAAAACCAAAAACAAATTCACACCTTTGCTCTTTCTCTTACCCTCTGCCATGAGCTGAAAGGAATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGGTTCGACTCCATTCTTCGTCGAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTCAAATCATGTCCCTGTGAAGATGTGCATTTGCTTTGTCCATTTCAGCAGTTGTGGTGGCAGTTGAATTCTAAATTCTATACCTTCAAGGTAGATTCTGATAATGACGTGAGACAACTGTTGATAGATGAGAATAATGACCAGATTTACATTTTACATGACATGAAGACCTACTCTCTGAAAGCACGAATCGGTGGCCATTCAATAAGAAACTACTCCACTCGAATGGCATTACCAGAAACCAAACGAAATTATAAAGCAGATGGTGATGGCCGAGCAACCACACCAGGCAACCAAGCTTCCAAAAAGTTTTCACAGTCTATCTCTGCACGAGACAGGGCAGCAAGAGGAGTGACATATTTGGTATCAAAGCGAATAAAAAGATACGAGAAGATTGTAGAGTTCGAACGTAATAGTGGAGCAGTGTCTTTCGAGTGCTCTGAACCAGAAGATATCAATATTGCTGTCTCTTTTAATGAAAGAATTTGGATAGAGAGGCAGAGAACCAACCTGCCTCGCAAACAGCTCAGATGA

Coding sequence (CDS)

ATGCCACAAAATCCCTCTTTCTTGTCTAAGCTAAAAGAAAAGAAAAGAAAAGAAAACCAAAAACAAATTCACACCTTTGCTCTTTCTCTTACCCTCTGCCATGAGCTGAAAGGAATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGGTTCGACTCCATTCTTCGTCGAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTCAAATCATGTCCCTGTGAAGATGTGCATTTGCTTTGTCCATTTCAGCAGTTGTGGTGGCAGTTGAATTCTAAATTCTATACCTTCAAGGTAGATTCTGATAATGACGTGAGACAACTGTTGATAGATGAGAATAATGACCAGATTTACATTTTACATGACATGAAGACCTACTCTCTGAAAGCACGAATCGGTGGCCATTCAATAAGAAACTACTCCACTCGAATGGCATTACCAGAAACCAAACGAAATTATAAAGCAGATGGTGATGGCCGAGCAACCACACCAGGCAACCAAGCTTCCAAAAAGTTTTCACAGTCTATCTCTGCACGAGACAGGGCAGCAAGAGGAGTGACATATTTGGTATCAAAGCGAATAAAAAGATACGAGAAGATTGTAGAGTTCGAACGTAATAGTGGAGCAGTGTCTTTCGAGTGCTCTGAACCAGAAGATATCAATATTGCTGTCTCTTTTAATGAAAGAATTTGGATAGAGAGGCAGAGAACCAACCTGCCTCGCAAACAGCTCAGATGA

Protein sequence

MPQNPSFLSKLKEKKRKENQKQIHTFALSLTLCHELKGMGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLLCPFQQLWWQLNSKFYTFKVDSDNDVRQLLIDENNDQIYILHDMKTYSLKARIGGHSIRNYSTRMALPETKRNYKADGDGRATTPGNQASKKFSQSISARDRAARGVTYLVSKRIKRYEKIVEFERNSGAVSFECSEPEDINIAVSFNERIWIERQRTNLPRKQLR

Homology

[Close]

BLAST of CmaCh14G017020 vs. TrEMBL
Match: A0A0A0L7K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.6e-17
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 39 MGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 85
          MGWLQS FSPLKKLW RLHSS KKRRGIYILYEDVKSCPCEDVH+L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVL 46

[Close]

BLAST of CmaCh14G017020 vs. TrEMBL
Match: A0A0B0PU66_GOSAR (Putative serine/threonine-protein kinase yrzF OS=Gossypium arboreum GN=F383_12631 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.7e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 39 MGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 85
          MGWLQS FSPLKKLW RLHS+ +KRRGIYILYEDVKSCPCEDVH+L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKRRGIYILYEDVKSCPCEDVHVL 46

[Close]

BLAST of CmaCh14G017020 vs. TrEMBL
Match: A0A0V0GKY9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 39 MGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 85
          MGWLQS FSPLKKLW RLHS+ KKRRGIYILYEDVKSCPCEDV +L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVL 46

[Close]

BLAST of CmaCh14G017020 vs. TrEMBL
Match: M1CYA3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 39 MGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 85
          MGWLQS FSPLKKLW RLHS+ KKRRGIYILYEDVKSCPCEDV +L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVL 46

[Close]

BLAST of CmaCh14G017020 vs. TrEMBL
Match: A0A067G4Q3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g040585mg PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 35 ELKGMGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 85
          +L  MGWLQS FSPLKKLW+RLHS+ KKRRGIYILY+DVKSCP EDVH+L
Sbjct: 4  QLSKMGWLQSLFSPLKKLWLRLHSTPKKRRGIYILYDDVKSCPYEDVHVL 53

[Close]

BLAST of CmaCh14G017020 vs. NCBI nr
Match: gi|700201856|gb|KGN56989.1| (hypothetical protein Csa_3G147230 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 39 MGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 85
          MGWLQS FSPLKKLW RLHSS KKRRGIYILYEDVKSCPCEDVH+L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVL 46

[Close]

BLAST of CmaCh14G017020 vs. NCBI nr
Match: gi|728849117|gb|KHG28560.1| (Putative serine/threonine-protein kinase yrzF [Gossypium arboreum])

HSP 1 Score: 93.6 bits (231), Expect = 5.3e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 39 MGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 85
          MGWLQS FSPLKKLW RLHS+ +KRRGIYILYEDVKSCPCEDVH+L
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKRRGIYILYEDVKSCPCEDVHVL 46

[Close]

BLAST of CmaCh14G017020 vs. NCBI nr
Match: gi|641855839|gb|KDO74619.1| (hypothetical protein CISIN_1g040585mg, partial [Citrus sinensis])

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 35 ELKGMGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 85
          +L  MGWLQS FSPLKKLW+RLHS+ KKRRGIYILY+DVKSCP EDVH+L
Sbjct: 4  QLSKMGWLQSLFSPLKKLWLRLHSTPKKRRGIYILYDDVKSCPYEDVHVL 53

[Close]

BLAST of CmaCh14G017020 vs. NCBI nr
Match: gi|734345377|gb|KHN10675.1| (hypothetical protein glysoja_019106 [Glycine soja])

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 39 MGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 85
          MGWLQS   PLKKLW RLHSS KKRRGIYILY+DVKSCPCEDVH+L
Sbjct: 1  MGWLQSLLCPLKKLWDRLHSSHKKRRGIYILYKDVKSCPCEDVHVL 46

[Close]

BLAST of CmaCh14G017020 vs. NCBI nr
Match: gi|965670847|dbj|BAT85454.1| (hypothetical protein VIGAN_04300600 [Vigna angularis var. angularis])

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 39  MGWLQSFFSPLKKLWVRLHSSSKKRRGIYILYEDVKSCPCEDVHLL 85
           MGWLQSF  PLKKLW RLHS  +KRRGIYILY+DVKSCPCEDVH+L
Sbjct: 58  MGWLQSFLCPLKKLWDRLHSGHRKRRGIYILYKDVKSCPCEDVHVL 103

The following BLAST results are available for this feature:

BLAST of CmaCh14G017020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G017020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7K5_CUCSA	9.6e-17	91.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1	[more]
A0A0B0PU66_GOSAR	3.7e-16	86.96	Putative serine/threonine-protein kinase yrzF OS=Gossypium arboreum GN=F383_1263...	[more]
A0A0V0GKY9_SOLCH	1.8e-15	86.96	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
M1CYA3_SOLTU	1.8e-15	86.96	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1	[more]
A0A067G4Q3_CITSI	1.8e-15	80.00	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g040585mg PE=4 S...	[more]

BLAST of CmaCh14G017020 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh14G017020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201856\|gb\|KGN56989.1\|	1.4e-16	91.30	hypothetical protein Csa_3G147230 [Cucumis sativus]	[more]
gi\|728849117\|gb\|KHG28560.1\|	5.3e-16	86.96	Putative serine/threonine-protein kinase yrzF [Gossypium arboreum]	[more]
gi\|641855839\|gb\|KDO74619.1\|	2.6e-15	80.00	hypothetical protein CISIN_1g040585mg, partial [Citrus sinensis]	[more]
gi\|734345377\|gb\|KHN10675.1\|	1.3e-14	84.78	hypothetical protein glysoja_019106 [Glycine soja]	[more]
gi\|965670847\|dbj\|BAT85454.1\|	1.7e-14	82.61	hypothetical protein VIGAN_04300600 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G017020.1	CmaCh14G017020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 39..84 score: 5.3
None	No IPR available	PANTHER	PTHR33181:SF3	SUBFAMILY NOT NAMED	coord: 39..84 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G017020	Cla021630	Watermelon (97103) v1	cmawmB242
CmaCh14G017020	Csa3G147230	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G017020	ClCG09G007150	Watermelon (Charleston Gray)	cmawcgB215
CmaCh14G017020	CSPI03G13190	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G017020	CmoCh14G017450	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G017020	CmoCh06G014160	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G017020	Lsi05G015990	Bottle gourd (USVL1VR-Ls)	cmalsiB245
CmaCh14G017020	CsaV3_3G013360	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G017020	Cla97C09G169760	Watermelon (97103) v2	cmawmbB280
CmaCh14G017020	Cla97C05G086400	Watermelon (97103) v2	cmawmbB263
CmaCh14G017020	CsGy3G013310	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G017020	Carg23526	Silver-seed gourd	carcmaB1174

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G017020	CmaCh06G014140	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G017020	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G017020	Silver-seed gourd	carcmaB0090
CmaCh14G017020	Silver-seed gourd	carcmaB0453
CmaCh14G017020	Silver-seed gourd	carcmaB0847
CmaCh14G017020	Watermelon (97103) v2	cmawmbB266
CmaCh14G017020	Wax gourd	cmawgoB0312
CmaCh14G017020	Wax gourd	cmawgoB0328
CmaCh14G017020	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh14G017020	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G017020	Cucurbita moschata (Rifu)	cmacmoB251
CmaCh14G017020	Cucurbita moschata (Rifu)	cmacmoB279
CmaCh14G017020	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G017020	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G017020	Watermelon (97103) v1	cmawmB250
CmaCh14G017020	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G017020	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G017020	Bottle gourd (USVL1VR-Ls)	cmalsiB225