CmoCh14G017450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G017450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaA05g17230D protein
Location	Cmo_Chr14 : 13588104 .. 13588847 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACAAAATCCCTCTTTCTTGTCTAAGCTAAAAGAAAAGAAAAGAAAAGAAAACCAAAAACAAATTCATACCTTTGCTCTTTCTCTTACCCTCTGCCATGAGCTGAAAGGAATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGTCGAAAAAACGTAAGTTGCCTCCCCTTTTCGACCTTGCTTTCGTCGCTTACATTCTCTGTTTTTTTGTTTAGCCTGCATTTCTGCACCCCTCTTCTTCTGTTGCTTCCTTTTGCCCTGCAATGACAGCATTTTCATATTTTGAACAGCCATTTCTCCTTCCCTTCCTGTTCTTTCACATGAAAATTGTGCAGAAAAGAATCTCTTCAACACCCTTCTAAGTTTTTTCATATTTTCTGGGTTGTTTAATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTCAAATCATGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTTCATTTCCACCAAAGCAATGAAGCTTTCAACCTCCTAAACACAGTTTCCCCAGCAATGTACATAAAATATTTATAATGCTTTACATACTGAAGGGGGGGAAAATGAATGCCCAGAAATAAAAGTTTACCTTCACCATTTTCACCATTTTTCTCTCTTCTGTCTAATTTTTTGTGTAGCTTCTTACAGTAGTTGCTTTGTCCATTTCAGCAGTTGTGGTGGCAG

mRNA sequence

ATGCCACAAAATCCCTCTTTCTTGTCTAAGCTAAAAGAAAAGAAAAGAAAAGAAAACCAAAAACAAATTCATACCTTTGCTCTTTCTCTTACCCTCTGCCATGAGCTGAAAGGAATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGTCGAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTCAAATCATGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTTCATTTCCACCAAAGCAATGAAGCTTTCAACCTCCTAAACACAGTTTCCCCAGCAATGTACATAAAATATTTATAATGCTTTACATACTGAAGGGGGGGAAAATGAATGCCCAGAAATAAAAGTTTACCTTCACCATTTTCACCATTTTTCTCTCTTCTGTCTAATTTTTTGTGTAGCTTCTTACAGTAGTTGCTTTGTCCATTTCAGCAGTTGTGGTGGCAG

Coding sequence (CDS)

ATGCCACAAAATCCCTCTTTCTTGTCTAAGCTAAAAGAAAAGAAAAGAAAAGAAAACCAAAAACAAATTCATACCTTTGCTCTTTCTCTTACCCTCTGCCATGAGCTGAAAGGAATGGGGTGGCTCCAATCCTTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGTCGAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTCAAATCATGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTTCATTTCCACCAAAGCAATGA

Homology

[Close]

BLAST of CmoCh14G017450 vs. TrEMBL
Match: A0A0A0L7K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 39  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTSFPPK 98
           MGWLQS FSPLKKLWFRLHSS KKRRGIYILYEDVKSCPCEDVHVLWSILVESHT  PPK
Sbjct: 1   MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

Query: 99  Q 100
           Q
Sbjct: 61  Q 61

[Close]

BLAST of CmoCh14G017450 vs. TrEMBL
Match: K4CVH5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.1e-23
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 39  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-SFPP 98
           MGWLQS FSPLKKLWFRLHS+ KKRRGIYILYEDVKSCPCEDV VLWSILVESH  S PP
Sbjct: 1   MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 99  KQ 100
           ++
Sbjct: 61  RK 62

[Close]

BLAST of CmoCh14G017450 vs. TrEMBL
Match: M1CYA3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.1e-23
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 39  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-SFPP 98
           MGWLQS FSPLKKLWFRLHS+ KKRRGIYILYEDVKSCPCEDV VLWSILVESH  S PP
Sbjct: 1   MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 99  KQ 100
           ++
Sbjct: 61  RK 62

[Close]

BLAST of CmoCh14G017450 vs. TrEMBL
Match: A0A0V0GKY9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.1e-23
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 39  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-SFPP 98
           MGWLQS FSPLKKLWFRLHS+ KKRRGIYILYEDVKSCPCEDV VLWSILVESH  S PP
Sbjct: 1   MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 99  KQ 100
           ++
Sbjct: 61  RK 62

[Close]

BLAST of CmoCh14G017450 vs. TrEMBL
Match: V7CJR2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G045900g PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-22
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 39  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTSFPPK 98
           MGWLQS  SPLKKLWFR+HS+ KKRRGIYILYEDVKSCP EDVHVLWSILVESH+S+P K
Sbjct: 1   MGWLQSLISPLKKLWFRMHSTQKKRRGIYILYEDVKSCPYEDVHVLWSILVESHSSWPLK 60

Query: 99  Q 100
           +
Sbjct: 61  K 61

[Close]

BLAST of CmoCh14G017450 vs. NCBI nr
Match: gi|700201856|gb|KGN56989.1| (hypothetical protein Csa_3G147230 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-26
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 39  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTSFPPK 98
           MGWLQS FSPLKKLWFRLHSS KKRRGIYILYEDVKSCPCEDVHVLWSILVESHT  PPK
Sbjct: 1   MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

Query: 99  Q 100
           Q
Sbjct: 61  Q 61

[Close]

BLAST of CmoCh14G017450 vs. NCBI nr
Match: gi|593788196|ref|XP_007157137.1| (hypothetical protein PHAVU_002G045900g [Phaseolus vulgaris])

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 39  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTSFPPK 98
           MGWLQS  SPLKKLWFR+HS+ KKRRGIYILYEDVKSCP EDVHVLWSILVESH+S+P K
Sbjct: 1   MGWLQSLISPLKKLWFRMHSTQKKRRGIYILYEDVKSCPYEDVHVLWSILVESHSSWPLK 60

Query: 99  Q 100
           +
Sbjct: 61  K 61

[Close]

BLAST of CmoCh14G017450 vs. NCBI nr
Match: gi|297737042|emb|CBI26243.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 39  MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTSFPPK 98
           MGWLQS FSPLKKLWFRLHS+ +K RGIYILYEDVKSCP EDVHVLWSILVESH+  PP 
Sbjct: 1   MGWLQSLFSPLKKLWFRLHSAQRKSRGIYILYEDVKSCPYEDVHVLWSILVESHSPSPPS 60

Query: 99  Q 100
           +
Sbjct: 61  K 61

[Close]

BLAST of CmoCh14G017450 vs. NCBI nr
Match: gi|728849117|gb|KHG28560.1| (Putative serine/threonine-protein kinase yrzF [Gossypium arboreum])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1


Query: 39 MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHVLWSILVESH 93
          MGWLQS FSPLKKLWFRLHS+ +KRRGIYILYEDVKSCPCEDVHVLWSILVES+
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKRRGIYILYEDVKSCPCEDVHVLWSILVESN 54

[Close]

BLAST of CmoCh14G017450 vs. NCBI nr
Match: gi|595812379|ref|XP_007203393.1| (hypothetical protein PRUPE_ppa021027mg [Prunus persica])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1


Query: 39 MGWLQSFFSPLKKLWFRLHSSSKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTSFPP 98
          MGWLQS  SPLKKLW RLHS+ +KRRGIYILY+DV+SCPCEDVHVLWSILVESHT+ PP
Sbjct: 1  MGWLQSLVSPLKKLWDRLHSTHRKRRGIYILYKDVRSCPCEDVHVLWSILVESHTAPPP 59

The following BLAST results are available for this feature:

BLAST of CmoCh14G017450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G017450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7K5_CUCSA	1.6e-26	93.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1	[more]
K4CVH5_SOLLC	6.1e-23	85.48	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1CYA3_SOLTU	6.1e-23	85.48	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1	[more]
A0A0V0GKY9_SOLCH	6.1e-23	85.48	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
V7CJR2_PHAVU	1.0e-22	83.61	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G045900g PE=4 SV=1	[more]

BLAST of CmoCh14G017450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh14G017450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201856\|gb\|KGN56989.1\|	2.2e-26	93.44	hypothetical protein Csa_3G147230 [Cucumis sativus]	[more]
gi\|593788196\|ref\|XP_007157137.1\|	1.5e-22	83.61	hypothetical protein PHAVU_002G045900g [Phaseolus vulgaris]	[more]
gi\|297737042\|emb\|CBI26243.3\|	4.4e-22	81.97	unnamed protein product [Vitis vinifera]	[more]
gi\|728849117\|gb\|KHG28560.1\|	1.3e-21	90.74	Putative serine/threonine-protein kinase yrzF [Gossypium arboreum]	[more]
gi\|595812379\|ref\|XP_007203393.1\|	1.7e-21	83.05	hypothetical protein PRUPE_ppa021027mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G017450.1	CmoCh14G017450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 39..92 score: 9.8
None	No IPR available	PANTHER	PTHR33181:SF3	SUBFAMILY NOT NAMED	coord: 39..92 score: 9.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G017450	CmaCh14G017020	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G017450	CmaCh06G014140	Cucurbita maxima (Rimu)	cmacmoB797
CmoCh14G017450	Cla021630	Watermelon (97103) v1	cmowmB231
CmoCh14G017450	Csa3G147230	Cucumber (Chinese Long) v2	cmocuB239
CmoCh14G017450	CSPI03G13190	Wild cucumber (PI 183967)	cmocpiB243
CmoCh14G017450	Lsi05G015990	Bottle gourd (USVL1VR-Ls)	cmolsiB233
CmoCh14G017450	Cp4.1LG03g10810	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G017450	CsaV3_3G013360	Cucumber (Chinese Long) v3	cmocucB0283
CmoCh14G017450	Cla97C05G086400	Watermelon (97103) v2	cmowmbB243
CmoCh14G017450	Cla97C09G169760	Watermelon (97103) v2	cmowmbB263
CmoCh14G017450	CsGy3G013310	Cucumber (Gy14) v2	cgybcmoB290
CmoCh14G017450	Carg23526	Silver-seed gourd	carcmoB1142

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G017450	CmoCh06G014160	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G017450	Melon (DHL92) v3.5.1	cmomeB230
CmoCh14G017450	Watermelon (Charleston Gray)	cmowcgB219
CmoCh14G017450	Watermelon (97103) v1	cmowmB239
CmoCh14G017450	Cucurbita pepo (Zucchini)	cmocpeB230
CmoCh14G017450	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G017450	Bottle gourd (USVL1VR-Ls)	cmolsiB213
CmoCh14G017450	Melon (DHL92) v3.6.1	cmomedB260
CmoCh14G017450	Silver-seed gourd	carcmoB0096
CmoCh14G017450	Silver-seed gourd	carcmoB0444
CmoCh14G017450	Silver-seed gourd	carcmoB0823
CmoCh14G017450	Watermelon (97103) v2	cmowmbB246
CmoCh14G017450	Wax gourd	cmowgoB0300
CmoCh14G017450	Wax gourd	cmowgoB0317
CmoCh14G017450	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh14G017450	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh14G017450	Cucumber (Gy14) v1	cgycmoB0700
CmoCh14G017450	Cucurbita maxima (Rimu)	cmacmoB350
CmoCh14G017450	Cucurbita maxima (Rimu)	cmacmoB883