Cla021630 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021630
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	cDNA clone J013105D21 full insert sequence (AHRD V1 ***- A3BLD3_ORYSJ)
Location	Chr5 : 4772096 .. 4772486 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCCAAAAAACGTAAGTCCCTTCCCTTTTCGAACTCGGTTTCATAGCTTACATTCTCTGTTTCCTCTCTGTTTCTCCCTTTTCTCAACTCTTCTTCTGTTGCTTCTTTTTAAAATGCCACCATTTCCCCTTCTCTTTTCTGTTCTTTCACTTGAAAATTATGGGGAAAAGTTCTCCTTTTTTTTTTCCTTCATATTTTTTGGGTTGTTTAATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCTTGTCCTTGTGAAGATGTGCATGTGCTTTGGTCTATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA

mRNA sequence

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCCAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCTTGTCCTTGTGAAGATGTGCATGTGCTTTGGTCTATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA

Coding sequence (CDS)

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCCAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCTTGTCCTTGTGAAGATGTGCATGTGCTTTGGTCTATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA

Protein sequence

MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ

Homology

[Close]

BLAST of Cla021630 vs. TrEMBL
Match: A0A0A0L7K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.7e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Cla021630 vs. TrEMBL
Match: K4CVH5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Cla021630 vs. TrEMBL
Match: A0A0V0GKY9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Cla021630 vs. TrEMBL
Match: M1CYA3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Cla021630 vs. TrEMBL
Match: M5XVP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024671mg PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.6e-24
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWL SLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVE+HTP  P 
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTPSLPS 60

Query: 61 Q 62
          +
Sbjct: 61 K 61

[Close]

BLAST of Cla021630 vs. NCBI nr
Match: gi|700201856|gb|KGN56989.1| (hypothetical protein Csa_3G147230 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Cla021630 vs. NCBI nr
Match: gi|596245989|ref|XP_007224549.1| (hypothetical protein PRUPE_ppa024671mg [Prunus persica])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWL SLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVE+HTP  P 
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTPSLPS 60

Query: 61 Q 62
          +
Sbjct: 61 K 61

[Close]

BLAST of Cla021630 vs. NCBI nr
Match: gi|297737042|emb|CBI26243.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-23
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLWFRLHS+ +K RGIYILYEDVKSCP EDVHVLWSILVESH+P PP 
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKSRGIYILYEDVKSCPYEDVHVLWSILVESHSPSPPS 60

Query: 61 Q 62
          +
Sbjct: 61 K 61

[Close]

BLAST of Cla021630 vs. NCBI nr
Match: gi|743785936|ref|XP_011026407.1| (PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica])

HSP 1 Score: 114.8 bits (286), Expect = 5.4e-23
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 1   MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
           MGWLQSL SPLKKLWFRLHS+PKKRRGIYILYEDVKSC  EDVHVLWSILVESHTP  P 
Sbjct: 63  MGWLQSLLSPLKKLWFRLHSTPKKRRGIYILYEDVKSCQYEDVHVLWSILVESHTPSLPS 122

Query: 61  Q 62
           +
Sbjct: 123 K 123

[Close]

BLAST of Cla021630 vs. NCBI nr
Match: gi|728849117|gb|KHG28560.1| (Putative serine/threonine-protein kinase yrzF [Gossypium arboreum])

HSP 1 Score: 114.4 bits (285), Expect = 7.1e-23
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWLQSLFSPLKKLWFRLHS+ +KRRGIYILYEDVKSCPCEDVHVLWSILVES+ P
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKRRGIYILYEDVKSCPCEDVHVLWSILVESNAP 56

The following BLAST results are available for this feature:

BLAST of Cla021630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7K5_CUCSA	2.7e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1	[more]
K4CVH5_SOLLC	3.4e-24	88.71	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0GKY9_SOLCH	3.4e-24	88.71	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
M1CYA3_SOLTU	3.4e-24	88.71	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1	[more]
M5XVP0_PRUPE	7.6e-24	86.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024671mg PE=4 SV=1	[more]

BLAST of Cla021630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201856\|gb\|KGN56989.1\|	3.9e-29	100.00	hypothetical protein Csa_3G147230 [Cucumis sativus]	[more]
gi\|596245989\|ref\|XP_007224549.1\|	1.1e-23	86.89	hypothetical protein PRUPE_ppa024671mg [Prunus persica]	[more]
gi\|297737042\|emb\|CBI26243.3\|	2.4e-23	85.25	unnamed protein product [Vitis vinifera]	[more]
gi\|743785936\|ref\|XP_011026407.1\|	5.4e-23	86.89	PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]	[more]
gi\|728849117\|gb\|KHG28560.1\|	7.1e-23	91.07	Putative serine/threonine-protein kinase yrzF [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021630	Cla021630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 1..54 score: 2.0
None	No IPR available	PANTHER	PTHR33181:SF3	SUBFAMILY NOT NAMED	coord: 1..54 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021630	Cla97C09G169760	Watermelon (97103) v2	wmwmbB232
Cla021630	Cla97C05G086400	Watermelon (97103) v2	wmwmbB206
Cla021630	Csa3G147230	Cucumber (Chinese Long) v2	cuwmB233
Cla021630	ClCG09G007150	Watermelon (Charleston Gray)	wcgwmB032
Cla021630	CSPI03G13190	Wild cucumber (PI 183967)	cpiwmB231
Cla021630	CmaCh14G017020	Cucurbita maxima (Rimu)	cmawmB242
Cla021630	CmaCh06G014140	Cucurbita maxima (Rimu)	cmawmB798
Cla021630	CmoCh06G014160	Cucurbita moschata (Rifu)	cmowmB793
Cla021630	CmoCh14G017450	Cucurbita moschata (Rifu)	cmowmB231
Cla021630	Lsi05G015990	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021630	Cp4.1LG03g10810	Cucurbita pepo (Zucchini)	cpewmB613
Cla021630	CsGy3G013310	Cucumber (Gy14) v2	cgybwmB217
Cla021630	Carg23526	Silver-seed gourd	carwmB0849
Cla021630	CsaV3_3G013360	Cucumber (Chinese Long) v3	cucwmB239

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021630	Silver-seed gourd	carwmB0070
Cla021630	Silver-seed gourd	carwmB0316
Cla021630	Silver-seed gourd	carwmB0603
Cla021630	Watermelon (97103) v2	wmwmbB217
Cla021630	Wax gourd	wgowmB064
Cla021630	Wax gourd	wgowmB201
Cla021630	Watermelon (97103) v1	wmwmB138
Cla021630	Cucumber (Gy14) v1	cgywmB479
Cla021630	Cucurbita maxima (Rimu)	cmawmB344
Cla021630	Cucurbita maxima (Rimu)	cmawmB869
Cla021630	Cucurbita moschata (Rifu)	cmowmB856
Cla021630	Melon (DHL92) v3.5.1	mewmB461
Cla021630	Watermelon (Charleston Gray)	wcgwmB286
Cla021630	Cucurbita pepo (Zucchini)	cpewmB331
Cla021630	Cucurbita pepo (Zucchini)	cpewmB845
Cla021630	Bottle gourd (USVL1VR-Ls)	lsiwmB017
Cla021630	Melon (DHL92) v3.6.1	medwmB228
Cla021630	Melon (DHL92) v3.6.1	medwmB447