Csa3G147230 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G147230
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	cDNA clone:J013105D21, full insert sequence
Location	Chr3 : 9906164 .. 9906744 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAGGACCAATATCAAAACCAACACAAATCCTTTGCTCTTTCTAATATTCTCTCTACATGAAGTGAAAGACATTTTCCCTCCACTTCTCTTCTCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTAAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCTAAAAAACGTAAGTCACTTCCCTTTTCGAACTCAGTTTCATTTCATCACTTACATTCTCTGTTTCTCTCTTTTTGCCTTCTACAATGCCACCATTTCCCCTTCACTTTCTGTTCTTTCACTAGAAAATTATGTAGAAAAGAAAAGAATCTCTTCAACATCCTTTGAAGTTCAAGTTTTTTTTTTCTTTTTTGGTTCATAGTTTTTGGGTAATTTTGATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCGAAACAATGAAGCTTTCAAGTTTCATCATCCTAAATACACAACTTCTCCACCAATGTACATAAAATATTTATAATACTTTATATAT

mRNA sequence

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTAAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCTAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCGAAACAATGA

Coding sequence (CDS)

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTAAAGAAGCTCTGGTTTCGCCTCCATTCTTCGCCTAAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCGAAACAATGA

Protein sequence

MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ*

Homology

[Close]

BLAST of Csa3G147230 vs. TrEMBL
Match: A0A0A0L7K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.7e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Csa3G147230 vs. TrEMBL
Match: K4CVH5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Csa3G147230 vs. TrEMBL
Match: A0A0V0GKY9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Csa3G147230 vs. TrEMBL
Match: M1CYA3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHSLPP 60

Query: 61 KQ 62
          ++
Sbjct: 61 RK 62

[Close]

BLAST of Csa3G147230 vs. TrEMBL
Match: M5XVP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024671mg PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.7e-24
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWL SLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVE+HTP  P 
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTPSLPS 60

Query: 61 Q 62
          +
Sbjct: 61 K 61

[Close]

BLAST of Csa3G147230 vs. NCBI nr
Match: gi|700201856|gb|KGN56989.1| (hypothetical protein Csa_3G147230 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Csa3G147230 vs. NCBI nr
Match: gi|596245989|ref|XP_007224549.1| (hypothetical protein PRUPE_ppa024671mg [Prunus persica])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWL SLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVE+HTP  P 
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTPSLPS 60

Query: 61 Q 62
          +
Sbjct: 61 K 61

[Close]

BLAST of Csa3G147230 vs. NCBI nr
Match: gi|297737042|emb|CBI26243.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-23
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
          MGWLQSLFSPLKKLWFRLHS+ +K RGIYILYEDVKSCP EDVHVLWSILVESH+P PP 
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKSRGIYILYEDVKSCPYEDVHVLWSILVESHSPSPPS 60

Query: 61 Q 62
          +
Sbjct: 61 K 61

[Close]

BLAST of Csa3G147230 vs. NCBI nr
Match: gi|743785936|ref|XP_011026407.1| (PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica])

HSP 1 Score: 114.8 bits (286), Expect = 5.5e-23
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 1   MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPK 60
           MGWLQSL SPLKKLWFRLHS+PKKRRGIYILYEDVKSC  EDVHVLWSILVESHTP  P 
Sbjct: 63  MGWLQSLLSPLKKLWFRLHSTPKKRRGIYILYEDVKSCQYEDVHVLWSILVESHTPSLPS 122

Query: 61  Q 62
           +
Sbjct: 123 K 123

[Close]

BLAST of Csa3G147230 vs. NCBI nr
Match: gi|728849117|gb|KHG28560.1| (Putative serine/threonine-protein kinase yrzF [Gossypium arboreum])

HSP 1 Score: 114.4 bits (285), Expect = 7.2e-23
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWLQSLFSPLKKLWFRLHS+ +KRRGIYILYEDVKSCPCEDVHVLWSILVES+ P
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKRRGIYILYEDVKSCPCEDVHVLWSILVESNAP 56

The following BLAST results are available for this feature:

BLAST of Csa3G147230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7K5_CUCSA	2.7e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1	[more]
K4CVH5_SOLLC	3.5e-24	88.71	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0GKY9_SOLCH	3.5e-24	88.71	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
M1CYA3_SOLTU	3.5e-24	88.71	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1	[more]
M5XVP0_PRUPE	7.7e-24	86.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024671mg PE=4 SV=1	[more]

BLAST of Csa3G147230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201856\|gb\|KGN56989.1\|	3.9e-29	100.00	hypothetical protein Csa_3G147230 [Cucumis sativus]	[more]
gi\|596245989\|ref\|XP_007224549.1\|	1.1e-23	86.89	hypothetical protein PRUPE_ppa024671mg [Prunus persica]	[more]
gi\|297737042\|emb\|CBI26243.3\|	2.5e-23	85.25	unnamed protein product [Vitis vinifera]	[more]
gi\|743785936\|ref\|XP_011026407.1\|	5.5e-23	86.89	PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]	[more]
gi\|728849117\|gb\|KHG28560.1\|	7.2e-23	91.07	Putative serine/threonine-protein kinase yrzF [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G147230.1	Csa3G147230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 1..54 score: 2.0
None	No IPR available	PANTHER	PTHR33181:SF3	SUBFAMILY NOT NAMED	coord: 1..54 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G147230	Cla021630	Watermelon (97103) v1	cuwmB233
Csa3G147230	ClCG09G007150	Watermelon (Charleston Gray)	cuwcgB183
Csa3G147230	Lsi05G015990	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G147230	Cla97C09G169760	Watermelon (97103) v2	cuwmbB259
Csa3G147230	Cla97C05G086400	Watermelon (97103) v2	cuwmbB204
Csa3G147230	CSPI03G13190	Wild cucumber (PI 183967)	cpicuB120
Csa3G147230	CmaCh06G014140	Cucurbita maxima (Rimu)	cmacuB814
Csa3G147230	CmaCh14G017020	Cucurbita maxima (Rimu)	cmacuB253
Csa3G147230	CmoCh06G014160	Cucurbita moschata (Rifu)	cmocuB806
Csa3G147230	CmoCh14G017450	Cucurbita moschata (Rifu)	cmocuB239
Csa3G147230	Cp4.1LG03g10810	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G147230	CsGy3G013310	Cucumber (Gy14) v2	cgybcuB109
Csa3G147230	Carg23526	Silver-seed gourd	carcuB0865

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G147230	Melon (DHL92) v3.5.1	cumeB192
Csa3G147230	Melon (DHL92) v3.5.1	cumeB236
Csa3G147230	Watermelon (Charleston Gray)	cuwcgB222
Csa3G147230	Watermelon (97103) v1	cuwmB279
Csa3G147230	Cucurbita pepo (Zucchini)	cpecuB310
Csa3G147230	Cucurbita pepo (Zucchini)	cpecuB859
Csa3G147230	Bottle gourd (USVL1VR-Ls)	culsiB150
Csa3G147230	Melon (DHL92) v3.6.1	cumedB177
Csa3G147230	Melon (DHL92) v3.6.1	cumedB223
Csa3G147230	Silver-seed gourd	carcuB0071
Csa3G147230	Silver-seed gourd	carcuB0350
Csa3G147230	Silver-seed gourd	carcuB0633
Csa3G147230	Watermelon (97103) v2	cuwmbB231
Csa3G147230	Wax gourd	cuwgoB252
Csa3G147230	Wax gourd	cuwgoB269
Csa3G147230	Cucumber (Gy14) v1	cgycuB366
Csa3G147230	Cucurbita maxima (Rimu)	cmacuB355
Csa3G147230	Cucurbita maxima (Rimu)	cmacuB885
Csa3G147230	Cucurbita moschata (Rifu)	cmocuB872