CmoCh06G014160 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G014160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein FAM70A
Location	Cmo_Chr06 : 10304488 .. 10305219 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCCTCTTCTCTAAGCTAAGCTAAAAAAAATGCACAAAATCATACCTTTCCTCTTTCTTTCTATTCCCTGAGGCATTTTCCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCCCCCGAAAAACGTAAGTTCCTTCCCTTTTGAACTCGCTTTCGTTCATGTTTTTCGGCTGCAATGCCACCATTTCCAGCTTTGAAGTTCCAAGTTTTTTCATTTTCTGGGGTTGTTTTTCAATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTAAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATCTTAGTGGAATCACACACTCCATACAACAAAACAATGAAACTTTCAGCCTCCTAAGCACACCTTCCCCACCAATGTACATAAAATATTTAAAAAAAACCTCAAAAATAAAAGTTTTCCTTCATCAATTTTCATCTTTTTTTGTTCTAAATTTTTGTGTAGCTGCTTACAGTTGCTTTGTCTATTTCAGCAGTTAAGGTGGCAGTTGAATTCTAAATATTATATGTTTAAGGTTTGATTCTGATAATGACATGAGACAACTATTGAATAGATGGGATAACCTAAAGATGTTCTTGGCTTAGATTGCCTGAAATAATACCAATGCCATGAATTGAATACTTGTTTGATTATATTTAATCTTTTCTTCATAAGTTCTGTAGAATATTG

mRNA sequence

AATCCCTCTTCTCTAAGCTAAGCTAAAAAAAATGCACAAAATCATACCTTTCCTCTTTCTTTCTATTCCCTGAGGCATTTTCCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCCCCCGAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTAAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATCTTAGTGGAATCACACACTCCATACAACAAAACAATGAAACTTTCAGCCTCCTAAGCACACCTTCCCCACCAATGTACATAAAATATTTAAAAAAAACCTCAAAAATAAAAGTTTTCCTTCATCAATTTTCATCTTTTTTTGTTCTAAATTTTTGTGTAGCTGCTTACAGTTGCTTTGTCTATTTCAGCAGTTAAGGTGGCAGTTGAATTCTAAATATTATATGTTTAAGGTTTGATTCTGATAATGACATGAGACAACTATTGAATAGATGGGATAACCTAAAGATGTTCTTGGCTTAGATTGCCTGAAATAATACCAATGCCATGAATTGAATACTTGTTTGATTATATTTAATCTTTTCTTCATAAGTTCTGTAGAATATTG

Coding sequence (CDS)

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCCCCCGAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTAAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATCTTAGTGGAATCACACACTCCATACAACAAAACAATGAAACTTTCAGCCTCCTAA

Homology

[Close]

BLAST of CmoCh06G014160 vs. TrEMBL
Match: A0A0A0L7K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.8e-26
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWLQSLFSPLKKLWFRLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 56

[Close]

BLAST of CmoCh06G014160 vs. TrEMBL
Match: M5XVP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024671mg PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-23
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWL SLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCP EDVHVLWSILVE+HTP
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTP 56

[Close]

BLAST of CmoCh06G014160 vs. TrEMBL
Match: A0A0V0GKY9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.1e-23
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESH 55
          MGWLQSLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCPCEDV VLWSILVESH
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESH 54

[Close]

BLAST of CmoCh06G014160 vs. TrEMBL
Match: M1CYA3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.1e-23
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESH 55
          MGWLQSLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCPCEDV VLWSILVESH
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESH 54

[Close]

BLAST of CmoCh06G014160 vs. TrEMBL
Match: K4CVH5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.1e-23
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESH 55
          MGWLQSLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCPCEDV VLWSILVESH
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESH 54

[Close]

BLAST of CmoCh06G014160 vs. NCBI nr
Match: gi|700201856|gb|KGN56989.1| (hypothetical protein Csa_3G147230 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWLQSLFSPLKKLWFRLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 56

[Close]

BLAST of CmoCh06G014160 vs. NCBI nr
Match: gi|596245989|ref|XP_007224549.1| (hypothetical protein PRUPE_ppa024671mg [Prunus persica])

HSP 1 Score: 115.2 bits (287), Expect = 4.5e-23
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWL SLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCP EDVHVLWSILVE+HTP
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTP 56

[Close]

BLAST of CmoCh06G014160 vs. NCBI nr
Match: gi|728849117|gb|KHG28560.1| (Putative serine/threonine-protein kinase yrzF [Gossypium arboreum])

HSP 1 Score: 114.4 bits (285), Expect = 7.6e-23
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWLQSLFSPLKKLWFRLHS+  KRRGIYILYEDVKSCPCEDVHVLWSILVES+ P
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKRRGIYILYEDVKSCPCEDVHVLWSILVESNAP 56

[Close]

BLAST of CmoCh06G014160 vs. NCBI nr
Match: gi|743785936|ref|XP_011026407.1| (PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-22
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 1   MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
           MGWLQSL SPLKKLWFRLHS+P+KRRGIYILYEDVKSC  EDVHVLWSILVESHTP
Sbjct: 63  MGWLQSLLSPLKKLWFRLHSTPKKRRGIYILYEDVKSCQYEDVHVLWSILVESHTP 118

[Close]

BLAST of CmoCh06G014160 vs. NCBI nr
Match: gi|297737042|emb|CBI26243.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-22
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWLQSLFSPLKKLWFRLHS+  K RGIYILYEDVKSCP EDVHVLWSILVESH+P
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAQRKSRGIYILYEDVKSCPYEDVHVLWSILVESHSP 56

The following BLAST results are available for this feature:

BLAST of CmoCh06G014160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G014160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7K5_CUCSA	8.8e-26	98.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147230 PE=4 SV=1	[more]
M5XVP0_PRUPE	3.1e-23	91.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024671mg PE=4 SV=1	[more]
A0A0V0GKY9_SOLCH	4.1e-23	94.44	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
M1CYA3_SOLTU	4.1e-23	94.44	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030088 PE=4 SV=1	[more]
K4CVH5_SOLLC	4.1e-23	94.44	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CmoCh06G014160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh06G014160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201856\|gb\|KGN56989.1\|	1.3e-25	98.21	hypothetical protein Csa_3G147230 [Cucumis sativus]	[more]
gi\|596245989\|ref\|XP_007224549.1\|	4.5e-23	91.07	hypothetical protein PRUPE_ppa024671mg [Prunus persica]	[more]
gi\|728849117\|gb\|KHG28560.1\|	7.6e-23	91.07	Putative serine/threonine-protein kinase yrzF [Gossypium arboreum]	[more]
gi\|743785936\|ref\|XP_011026407.1\|	2.2e-22	91.07	PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]	[more]
gi\|297737042\|emb\|CBI26243.3\|	8.4e-22	89.29	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G014160.1	CmoCh06G014160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 1..54 score: 7.6
None	No IPR available	PANTHER	PTHR33181:SF3	SUBFAMILY NOT NAMED	coord: 1..54 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G014160	CmaCh14G017020	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G014160	CmaCh06G014140	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G014160	Cla021630	Watermelon (97103) v1	cmowmB793
CmoCh06G014160	Csa3G147230	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G014160	ClCG09G007150	Watermelon (Charleston Gray)	cmowcgB721
CmoCh06G014160	CSPI03G13190	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G014160	Lsi05G015990	Bottle gourd (USVL1VR-Ls)	cmolsiB757
CmoCh06G014160	Cp4.1LG03g10810	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G014160	CsaV3_3G013360	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G014160	Cla97C09G169760	Watermelon (97103) v2	cmowmbB847
CmoCh06G014160	Cla97C05G086400	Watermelon (97103) v2	cmowmbB833
CmoCh06G014160	CsGy3G013310	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G014160	Carg23526	Silver-seed gourd	carcmoB1145

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G014160	CmoCh14G017450	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G014160	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G014160	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G014160	Watermelon (Charleston Gray)	cmowcgB746
CmoCh06G014160	Watermelon (97103) v1	cmowmB772
CmoCh06G014160	Watermelon (97103) v1	cmowmB802
CmoCh06G014160	Cucurbita pepo (Zucchini)	cmocpeB765
CmoCh06G014160	Cucurbita pepo (Zucchini)	cmocpeB777
CmoCh06G014160	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G014160	Bottle gourd (USVL1VR-Ls)	cmolsiB733
CmoCh06G014160	Bottle gourd (USVL1VR-Ls)	cmolsiB742
CmoCh06G014160	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G014160	Silver-seed gourd	carcmoB0102
CmoCh06G014160	Silver-seed gourd	carcmoB0448
CmoCh06G014160	Silver-seed gourd	carcmoB0825
CmoCh06G014160	Watermelon (97103) v2	cmowmbB837
CmoCh06G014160	Wax gourd	cmowgoB0997
CmoCh06G014160	Wax gourd	cmowgoB1005
CmoCh06G014160	Cucurbita moschata (Rifu)	cmocmoB308
CmoCh06G014160	Cucurbita moschata (Rifu)	cmocmoB309
CmoCh06G014160	Cucurbita moschata (Rifu)	cmocmoB484
CmoCh06G014160	Cucurbita moschata (Rifu)	cmocmoB485
CmoCh06G014160	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G014160	Cucurbita maxima (Rimu)	cmacmoB362
CmoCh06G014160	Cucurbita maxima (Rimu)	cmacmoB364
CmoCh06G014160	Cucurbita maxima (Rimu)	cmacmoB910