Lsi05G013760 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G013760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Genomic DNA, chromosome 3, P1 clone: MKP6
Location	chr05 : 21681284 .. 21681980 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTCTTCATCTTCTCTCTCTTGAATTATTTTTCTCTCTATATATTCTGACCCATTTCACTTCCAACGCCTTTCAGCCAAACATATTCTCAAACCTCAAACATTACTTTACTAATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGGTTACCTCTCGTCCTTCCTTTTAAAGCACTTGAAAAGTTATTTCAAACCAACCAATGAATTTTCATCCTACAATTCAAGAAAATTTCTGACTCCATTTTTTTGTTTAATTGGATTTTTTCAGAGCAAGAGAAGCGAGTGGACGTGAGGAATCTCCAAGGAGAAGTGATGGCATGTGGGTATGAAGATGTGCACGTGATGTGGTCTATTTTAGACAAGGCCAATTCTACTGCTACCGCCACCGCTGCCACTTGTAATGTGTCTTCTTAACGATCGACACCACCGTCGGCCCCGTCGTGGTCGACGGATGTTGGTTGCTTAATTGTTGTAGATAAACCATAATACGTCTCTCTCTCCCTCACTTTCTCTATGTTATTTTGGAGTTAATGATTTTGTTTATGTGTAGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGGTTTTTATTACTCTTAAATTTTAATTAATGC

mRNA sequence

CTCTTCTTCATCTTCTCTCTCTTGAATTATTTTTCTCTCTATATATTCTGACCCATTTCACTTCCAACGCCTTTCAGCCAAACATATTCTCAAACCTCAAACATTACTTTACTAATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGCGAGTGGACGTGAGGAATCTCCAAGGAGAAGTGATGGCATGTGGGTATGAAGATGTGCACGTGATGTGGTCTATTTTAGACAAGGCCAATTCTACTGCTACCGCCACCGCTGCCACTTGTAATGTGTCTTCTTAACGATCGACACCACCGTCGGCCCCGTCGTGGTCGACGGATGTTGGTTGCTTAATTGTTGTAGATAAACCATAATACGTCTCTCTCTCCCTCACTTTCTCTATGTTATTTTGGAGTTAATGATTTTGTTTATGTGTAGGGAATGAATCCCCATGATTTGAAGCTTTTAATCATGGTGAGATTTAAGGTTTTTATTACTCTTAAATTTTAATTAATGC

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGCGAGTGGACGTGAGGAATCTCCAAGGAGAAGTGATGGCATGTGGGTATGAAGATGTGCACGTGATGTGGTCTATTTTAGACAAGGCCAATTCTACTGCTACCGCCACCGCTGCCACTTGTAATGTGTCTTCTTAA

Protein sequence

MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMWSILDKANSTATATAATCNVSS

Homology

[Close]

BLAST of Lsi05G013760 vs. TrEMBL
Match: A0A0A0L5H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-33
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILD-KANSTATATAATCNVSS 82
          WSILD KANS AT   ATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of Lsi05G013760 vs. TrEMBL
Match: A0A059B5L7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04140 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1   MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
           MASWKKTI SPFRKACT FNQ+P   KKSH   E EKRV++ NLQGEVMAC YEDV VMW
Sbjct: 42  MASWKKTITSPFRKACTFFNQSPSRDKKSHQ--EHEKRVNMMNLQGEVMACAYEDVQVMW 101

Query: 61  SILDKANS 69
           SILDK+ +
Sbjct: 102 SILDKSKA 107

[Close]

BLAST of Lsi05G013760 vs. TrEMBL
Match: A0A067K874_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19104 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-19
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTI SPF+KACT FNQ PRD KKS  +   E RV V +L GEVMACGYEDV VMW
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRD-KKSQPEPGNENRVMVMDLHGEVMACGYEDVQVMW 60

Query: 61 SILDKANSTATATAATCNVSS 82
          SILDK+ ST       CN++S
Sbjct: 61 SILDKSKST------NCNLTS 74

[Close]

BLAST of Lsi05G013760 vs. TrEMBL
Match: G7JR35_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g124250 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.8e-18
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNP--RDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHV 60
          MASWKKTI +PF+KACT F + P  RDPKKS +  EQE+R+   +LQGEVMACGYEDV V
Sbjct: 1  MASWKKTITTPFKKACTFFKEQPTTRDPKKSQT--EQERRI--MDLQGEVMACGYEDVQV 60

Query: 61 MWSILDKANSTATATAATCNVSS 82
          MWS+LD++ STAT     CN++S
Sbjct: 61 MWSMLDRSKSTAT----ECNITS 75

[Close]

BLAST of Lsi05G013760 vs. TrEMBL
Match: K7MC91_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G185200 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.8e-18
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTI +PF+KACT FNQ P    K+ S +EQE R+   +L GEVMACGYEDV VMW
Sbjct: 1  MASWKKTIATPFKKACTFFNQQPPRDHKNKSQTEQENRI--MDLHGEVMACGYEDVQVMW 60

Query: 61 SILDKANSTATATAATCNVSS 82
          SILDK+ STA      CN++S
Sbjct: 61 SILDKSKSTA------CNITS 73

[Close]

BLAST of Lsi05G013760 vs. TAIR10
Match: AT3G17580.1 (AT3G17580.1 unknown protein)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-18
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKK-------SHSDSEQEKRVDVRNLQGEVMACGY 60
          MASWKKTI +PF+KA T FNQ  + PKK       + +  E EKR+ V+ LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVHVMWSILDKANST 70
          +DV VMWSILDK+NS+
Sbjct: 61 DDVLVMWSILDKSNSS 75

[Close]

BLAST of Lsi05G013760 vs. TAIR10
Match: AT1G48330.1 (AT1G48330.1 unknown protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.7e-17
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDS--EQEKRVDVRNLQGEVMACGYEDVHV 60
          MASWKKTI +PF+KA T FNQ  +  + +++ +  E EKR  V+ LQG+VMACGYEDV V
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRT-VQELQGDVMACGYEDVLV 60

Query: 61 MWSILDKANST 70
          MWSILDK+NS+
Sbjct: 61 MWSILDKSNSS 70

[Close]

BLAST of Lsi05G013760 vs. NCBI nr
Match: gi|659077054|ref|XP_008439007.1| (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 6.3e-35
Identity = 77/82 (93.90%), Postives = 77/82 (93.90%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILD-KANSTATATAATCNVSS 82
          SILD KANS AT   ATCNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of Lsi05G013760 vs. NCBI nr
Match: gi|449459806|ref|XP_004147637.1| (PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-33
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILD-KANSTATATAATCNVSS 82
          WSILD KANS AT   ATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of Lsi05G013760 vs. NCBI nr
Match: gi|629095418|gb|KCW61413.1| (hypothetical protein EUGRSUZ_H04140, partial [Eucalyptus grandis])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1   MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
           MASWKKTI SPFRKACT FNQ+P   KKSH   E EKRV++ NLQGEVMAC YEDV VMW
Sbjct: 42  MASWKKTITSPFRKACTFFNQSPSRDKKSHQ--EHEKRVNMMNLQGEVMACAYEDVQVMW 101

Query: 61  SILDKANS 69
           SILDK+ +
Sbjct: 102 SILDKSKA 107

[Close]

BLAST of Lsi05G013760 vs. NCBI nr
Match: gi|702447391|ref|XP_010024889.1| (PREDICTED: uncharacterized protein LOC104415311 [Eucalyptus grandis])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTI SPFRKACT FNQ+P   KKSH   E EKRV++ NLQGEVMAC YEDV VMW
Sbjct: 1  MASWKKTITSPFRKACTFFNQSPSRDKKSHQ--EHEKRVNMMNLQGEVMACAYEDVQVMW 60

Query: 61 SILDKANS 69
          SILDK+ +
Sbjct: 61 SILDKSKA 66

[Close]

BLAST of Lsi05G013760 vs. NCBI nr
Match: gi|802706977|ref|XP_012084229.1| (PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas])

HSP 1 Score: 101.7 bits (252), Expect = 6.3e-19
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTI SPF+KACT FNQ PRD KKS  +   E RV V +L GEVMACGYEDV VMW
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRD-KKSQPEPGNENRVMVMDLHGEVMACGYEDVQVMW 60

Query: 61 SILDKANSTATATAATCNVSS 82
          SILDK+ ST       CN++S
Sbjct: 61 SILDKSKST------NCNLTS 74

The following BLAST results are available for this feature:

BLAST of Lsi05G013760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G013760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5H1_CUCSA	1.1e-33	92.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171230 PE=4 SV=1	[more]
A0A059B5L7_EUCGR	1.2e-19	73.53	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04140 PE=4 ...	[more]
A0A067K874_JATCU	4.4e-19	65.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19104 PE=4 SV=1	[more]
G7JR35_MEDTR	4.8e-18	62.65	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g124250 PE=4 SV=1	[more]
K7MC91_SOYBN	4.8e-18	61.73	Uncharacterized protein OS=Glycine max GN=GLYMA_15G185200 PE=4 SV=1	[more]

BLAST of Lsi05G013760 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17580.1	1.5e-18	60.53	unknown protein	[more]
AT1G48330.1	3.7e-17	60.56	unknown protein	[more]

BLAST of Lsi05G013760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077054\|ref\|XP_008439007.1\|	6.3e-35	93.90	PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo]	[more]
gi\|449459806\|ref\|XP_004147637.1\|	1.5e-33	92.77	PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus]	[more]
gi\|629095418\|gb\|KCW61413.1\|	1.7e-19	73.53	hypothetical protein EUGRSUZ_H04140, partial [Eucalyptus grandis]	[more]
gi\|702447391\|ref\|XP_010024889.1\|	1.7e-19	73.53	PREDICTED: uncharacterized protein LOC104415311 [Eucalyptus grandis]	[more]
gi\|802706977\|ref\|XP_012084229.1\|	6.3e-19	65.43	PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015969	guanosine tetraphosphate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G013760.1	Lsi05G013760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 2..70 score: 3.1
None	No IPR available	PANTHER	PTHR33181:SF10	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MKP6	coord: 2..70 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G013760	Csa3G171230	Cucumber (Chinese Long) v2	culsiB210
Lsi05G013760	CSPI03G15450	Wild cucumber (PI 183967)	cpilsiB208
Lsi05G013760	Cucsa.252090	Cucumber (Gy14) v1	cgylsiB416
Lsi05G013760	CmaCh14G015510	Cucurbita maxima (Rimu)	cmalsiB246
Lsi05G013760	CmaCh06G015940	Cucurbita maxima (Rimu)	cmalsiB765
Lsi05G013760	CmoCh14G015870	Cucurbita moschata (Rifu)	cmolsiB234
Lsi05G013760	CmoCh06G015890	Cucurbita moschata (Rifu)	cmolsiB759
Lsi05G013760	Cla021837	Watermelon (97103) v1	lsiwmB366
Lsi05G013760	MELO3C006761	Melon (DHL92) v3.5.1	lsimeB379
Lsi05G013760	ClCG05G006950	Watermelon (Charleston Gray)	lsiwcgB336
Lsi05G013760	Cla97C05G088600	Watermelon (97103) v2	lsiwmbB334
Lsi05G013760	Bhi01G000833	Wax gourd	lsiwgoB444
Lsi05G013760	Cp4.1LG08g05480	Cucurbita pepo (Zucchini)	cpelsiB715
Lsi05G013760	Cp4.1LG03g12120	Cucurbita pepo (Zucchini)	cpelsiB507
Lsi05G013760	CsGy3G015520	Cucumber (Gy14) v2	cgyblsiB197
Lsi05G013760	Carg19589	Silver-seed gourd	carlsiB253
Lsi05G013760	Carg25663	Silver-seed gourd	carlsiB678
Lsi05G013760	CsaV3_3G015620	Cucumber (Chinese Long) v3	cuclsiB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G013760	Melon (DHL92) v3.6.1	lsimedB397
Lsi05G013760	Cucumber (Chinese Long) v3	cuclsiB245