Carg25663 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25663
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SsrA-binding
Location	Cucurbita_argyrosperma_scaffold_317 : 135044 .. 135441 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATATATATACTCTTGTCTACGTGCATCATCGTTCTCGTTGGTAATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACCATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGAGCTCTCGGGTTTTCTTTTGAATTTTCAACGACGGAGCAAAAAACAAAGAAAACGGTCTTATTTTAAGTTTCTTTTGTAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTGCCGCCACCGCCGCCGCCGCCACCACCACCGTCTATAATGTGTCTTCTTAA

mRNA sequence

TATATATATATATACTCTTGTCTACGTGCATCATCGTTCTCGTTGGTAATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACCATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTGCCGCCACCGCCGCCGCCGCCACCACCACCGTCTATAATGTGTCTTCTTAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACCATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTGCCGCCACCGCCGCCGCCGCCACCACCACCGTCTATAATGTGTCTTCTTAA

Protein sequence

MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTAATAAAATTTVYNVSS

Homology

[Close]

BLAST of Carg25663 vs. NCBI nr
Match: XP_022935724.1 (uncharacterized protein LOC111442547 [Cucurbita moschata])

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-32
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV
Sbjct: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60

Query: 61 MWSILDKTNSXXXXXXXXXXXXVYNVSS 89
          MWSILDKTNS XXXXXXXXXX VYNVSS
Sbjct: 61 MWSILDKTNS-XXXXXXXXXXTVYNVSS 87

[Close]

BLAST of Carg25663 vs. NCBI nr
Match: XP_022138108.1 (uncharacterized protein LOC111009357 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 62/70 (88.57%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1   MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
           MASWKKTI SP RKACTIFNQ PRD KKSH  SDSEQEKRVDVRDLQGEVMACGYEDV V
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSH--SDSEQEKRVDVRDLQGEVMACGYEDVHV 117

Query: 61  MWSILDKTNS 71
           MWSILDK NS
Sbjct: 118 MWSILDKANS 125

[Close]

BLAST of Carg25663 vs. NCBI nr
Match: XP_022980000.1 (uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharacterized protein LOC111790878 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 61/70 (87.14%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQHPRD KK  S SDSEQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKK--SPSDSEQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILDKTNS 71
          MWSILDK NS
Sbjct: 61 MWSILDKANS 68

[Close]

BLAST of Carg25663 vs. NCBI nr
Match: XP_008439007.1 (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQ+PRD KKSH  SDSEQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSH--SDSEQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILD-KTNS 71
          MWSILD K NS
Sbjct: 61 MWSILDHKANS 69

[Close]

BLAST of Carg25663 vs. NCBI nr
Match: XP_004147637.1 (PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hypothetical protein Csa_3G171230 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-22
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRD-SKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQ 60
          MASWKKTI SP RKACTIFNQ+PRD  KKSH  SDSEQEKRVDVR+LQGEVMACGYEDV 
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSH--SDSEQEKRVDVRNLQGEVMACGYEDVH 60

Query: 61 VMWSILD-KTNS 71
          VMWSILD K NS
Sbjct: 61 VMWSILDHKANS 70

[Close]

BLAST of Carg25663 vs. TAIR10
Match: AT1G48330.1 (unknown protein)

HSP 1 Score: 86.7 bits (213), Expect = 8.0e-18
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI +P +KA T FNQ  + ++ +++ +  E EKR  V++LQG+VMACGYEDV V
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRT-VQELQGDVMACGYEDVLV 60

Query: 61 MWSILDKTNS 71
          MWSILDK+NS
Sbjct: 61 MWSILDKSNS 69

[Close]

BLAST of Carg25663 vs. TAIR10
Match: AT3G17580.1 (unknown protein)

HSP 1 Score: 83.2 bits (204), Expect = 8.9e-17
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKS-----HSDSDSEQEKRVDVRDLQGEVMACGY 60
          MASWKKTI +P +KA T FNQ  +  KK       + +  E EKR+ V++LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVQVMWSILDKTNS 71
          +DV VMWSILDK+NS
Sbjct: 61 DDVLVMWSILDKSNS 74

[Close]

BLAST of Carg25663 vs. TrEMBL
Match: tr|A0A1S3AXS6|A0A1S3AXS6_CUCME (uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483930 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQ+PRD KKSH  SDSEQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSH--SDSEQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILD-KTNS 71
          MWSILD K NS
Sbjct: 61 MWSILDHKANS 69

[Close]

BLAST of Carg25663 vs. TrEMBL
Match: tr|A0A0A0L5H1|A0A0A0L5H1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-22
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRD-SKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQ 60
          MASWKKTI SP RKACTIFNQ+PRD  KKSH  SDSEQEKRVDVR+LQGEVMACGYEDV 
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSH--SDSEQEKRVDVRNLQGEVMACGYEDVH 60

Query: 61 VMWSILD-KTNS 71
          VMWSILD K NS
Sbjct: 61 VMWSILDHKANS 70

[Close]

BLAST of Carg25663 vs. TrEMBL
Match: tr|A0A059B5L7|A0A059B5L7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04140 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 1   MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
           MASWKKTITSP RKACT FNQ P   KKSH     E EKRV++ +LQGEVMAC YEDVQV
Sbjct: 42  MASWKKTITSPFRKACTFFNQSPSRDKKSH----QEHEKRVNMMNLQGEVMACAYEDVQV 101

Query: 61  MWSILDKTNS 71
           MWSILDK+ +
Sbjct: 102 MWSILDKSKA 107

[Close]

BLAST of Carg25663 vs. TrEMBL
Match: tr|A0A067K874|A0A067K874_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19104 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-17
Identity = 49/70 (70.00%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP +KACT FNQ PRD K   S  +   E RV V DL GEVMACGYEDVQV
Sbjct: 1  MASWKKTIASPFKKACTFFNQQPRDKK---SQPEPGNENRVMVMDLHGEVMACGYEDVQV 60

Query: 61 MWSILDKTNS 71
          MWSILDK+ S
Sbjct: 61 MWSILDKSKS 67

[Close]

BLAST of Carg25663 vs. TrEMBL
Match: tr|V7CC75|V7CC75_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G124400g PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIF-NQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQ 60
          MASWKKTIT+P +KACT F NQ PRD KK    S  EQE+R  V DLQGEVMACGYEDVQ
Sbjct: 1  MASWKKTITTPFKKACTFFNNQPPRDQKK----SQPEQERR--VMDLQGEVMACGYEDVQ 60

Query: 61 VMWSILDKTNS 71
          VMWSILDK+ S
Sbjct: 61 VMWSILDKSKS 65

The following BLAST results are available for this feature:

BLAST of Carg25663 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935724.1	1.6e-32	97.73	uncharacterized protein LOC111442547 [Cucurbita moschata]	[more]
XP_022138108.1	2.5e-25	88.57	uncharacterized protein LOC111009357 [Momordica charantia]	[more]
XP_022980000.1	1.2e-24	87.14	uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharac...	[more]
XP_008439007.1	1.8e-23	85.92	PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo]	[more]
XP_004147637.1	4.4e-22	84.72	PREDICTED: uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hy...	[more]

BLAST of Carg25663 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48330.1	8.0e-18	60.00	unknown protein	[more]
AT3G17580.1	8.9e-17	58.67	unknown protein	[more]

BLAST of Carg25663 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25663 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXS6\|A0A1S3AXS6_CUCME	1.2e-23	85.92	uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0L5H1\|A0A0A0L5H1_CUCSA	2.9e-22	84.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1	[more]
tr\|A0A059B5L7\|A0A059B5L7_EUCGR	1.5e-18	71.43	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04...	[more]
tr\|A0A067K874\|A0A067K874_JATCU	2.2e-17	70.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19104 PE=4 SV=1	[more]
tr\|V7CC75\|V7CC75_PHAVU	4.8e-17	73.24	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G124400g PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015969	guanosine tetraphosphate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25663-RA	Carg25663-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..43
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 1..73
None	No IPR available	PANTHER	PTHR33181:SF10	SUBFAMILY NOT NAMED	coord: 1..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25663	Cla021837	Watermelon (97103) v1	carwmB0738
Carg25663	Csa3G171230	Cucumber (Chinese Long) v2	carcuB0757
Carg25663	MELO3C006761	Melon (DHL92) v3.5.1	carmeB0736
Carg25663	ClCG05G006950	Watermelon (Charleston Gray)	carwcgB0718
Carg25663	CSPI03G15450	Wild cucumber (PI 183967)	carcpiB0774
Carg25663	Cucsa.252090	Cucumber (Gy14) v1	carcgyB0833
Carg25663	CmaCh06G015940	Cucurbita maxima (Rimu)	carcmaB1036
Carg25663	CmaCh14G015510	Cucurbita maxima (Rimu)	carcmaB1035
Carg25663	CmoCh06G015890	Cucurbita moschata (Rifu)	carcmoB1007
Carg25663	CmoCh14G015870	Cucurbita moschata (Rifu)	carcmoB1006
Carg25663	Lsi05G013760	Bottle gourd (USVL1VR-Ls)	carlsiB678
Carg25663	Cp4.1LG03g12120	Cucurbita pepo (Zucchini)	carcpeB1042
Carg25663	Cp4.1LG08g05480	Cucurbita pepo (Zucchini)	carcpeB1043
Carg25663	CsGy3G015520	Cucumber (Gy14) v2	carcgybB0736
Carg25663	CsaV3_3G015620	Cucumber (Chinese Long) v3	carcucB0777
Carg25663	Cla97C05G088600	Watermelon (97103) v2	carwmbB0776
Carg25663	Bhi01G000833	Wax gourd	carwgoB0876

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25663	Carg19589	Silver-seed gourd	carcarB317

The following block(s) are covering this gene:

None